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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023719 ID=TCONS_00023719|Name=TCONS_00023719|organism=Clytia hemisphaerica|type=transcript|length=4238bp
GCTAAGAGAAGTAGAATTTGTGGTCTTCTCGTAGACTCgaataaatacaa
aaatacaGTGATTTGAGAATGTTATTTTATAGAATGGATTTTATCTCTGT
TATGGTTTGTttcttgaaaatattcaaaaaaccgcttttatTTCATGGTT
TATTGTGGTCATTTTGATCTTATCCTGAgtgtttttgtattttcgtCCTT
CCGCTCTAGCCTCTCTTATCTTTTCTGGGTGAACACAGATGGAATTTCTT
TccctttttattcaaaaatcttTATGATGTAGTTTTATAACTGCAATGGT
TTGGTTGAAAATCTTCACTGTATTTTGAGCTCGTTTGGATGGGAGATTAC
CATCTAAGTTTATTGGGGggggtttcacttttacggtatgacggtattgg
gccttttttttCCCNACCCCCCCTTTATTAGGTGtttgtgtttttattga
atttgagCTTGATAAATTTAGCTAATTTATTAATGGAACCATGTTGTTCT
GGGAATTTTCTCTCTTCCTCtgctgttttgattttgtaaagcAGTCCCTG
AGTTCTTAAGCATTGATTGTCataatatatattataaaaTGGACTGGATA
TATATGATAAaggcggccatcgaaaaattgttctgttcacATCACAGCAG
TTAAAAATACGTGCGGGCccagtatggatttcgtgtaacCAACGCCAAAG
ATCTTCGGagtacaactgaaacgtttttgtcgcattgtggcgtaagggta
cttacaaaattgaaaaatttaatgttggtgcaaaagaaattttgcttggc
gtgaggcttgctgtacggaaaaatatctttggcgcgagatttcgtggaat
ccatactggatGCGGGCGGGCGTACGGGCGGCGGTTGGAAAGATTtctag
gtttttaaaaattgcatCATAAAGCCAATTTCTTCTTCTGATTGGGATTG
GGAGGGCTGTATCTGTTTGTGTTCTTGCGAAGTATAGCTAAAATAATGCT
GTTCTCCCCCTACAGTTGCAATCTAATTTAGCAGtgttatttgttttgtt
tatgtgtTCGTTTGTTCTGCAGAGAAGAGCTAGAgaaaaagctatgcaat
ttgcTTTTTCCAGGATTTTCCCGCTTCTNTTCTCCCCCTACAGTTGCAAT
CTAATTTAGCAGtgttatttgttttgtttatgtgtTCGTTTGTTCTGCAG
AGAAGAGCTAGAgaaaaagctatgcaatttgcTTTTTCCAGGATTTTCCC
GCTTCTCCACATCAGGATGGAATTGTCAGTGGAAAATATGATAAGTGTGG
GTGAGACGATTAGAACAATTTTTTGGTGGCCACCTGATGTAATGCCAGAA
ATTATCAGTTTCTTCCTCCTGAACATTTGAGCGTTTGAAACTTTTTCACA
AGATATCACATAAACCATAAAACAGGCCTCCCGAGATGTGATAATTGATC
TTGATTTAACCAATTTTTGGAGATACAAGTATTGGTTTTCCTAATTTTTA
TATAATGAAATCTTATTTTAACAATTATTAGctaaaatgcgtatcaaaga
ttaatgctggaaagcgctatatcgtttacttgactcacaagcaaaaaaat
gagattcatgaaaaaataaagcattttcaaaaactatgaaaaagatgaaa
aaaatttgaaccaagccaacctttaaaagtaatttgaagaacaacttccc
aagaaaagatCTACAGGAAAGAAGACACCCACCTAGATGCGTCCATCACC
GGATAggctatttttttcaagcctGAAATTGCAGGAATTTAGGGAGTGAA
AAACAAAGTAAAATGGATGATTTTGATGATGGAGTGATTGAAGTTCAAGT
CATTCCTCAAGATGATAATTGGGGAGAAACTGCAACAACCATCACAGaaa
CTGCAACATCTGTTTACTCGGACTTGGACGATACTGATCCTTTTGGGgaa
gaaatagaaaaacataGATTTCAATGTCCAAATTCTAAACAAGCACTCAA
TATTTTGTTATCTGTAATTCTTGCTTTAATGGCTGTTGTGAGTCCAATTG
CTTTTGTTATCATTCCCAATGTGTCTTCTTCATTGAAAGTTACTGGAGAA
GAGTGTGGGTCAGTTTGCGAAGGATTGTATATAACAATTGCTATCAAAGA
GATTGTTTTAATATTTGGCTTATGGGCTTTATATATCCGACCAAACAAAG
TTGATTTACCACGTTTAAATGTATTCAAAGTTGGAATGATGGTTTTAGTT
TACGTTTCCATAATATGCTTTTGGTTGTTTTACTCAATTCGGATGATTGG
AAATGGGACAAATCAATACTTGACTGTTTCATTTGCCAGTTCATTTTTGG
ATGCTATGTTGTTCCTTCACTACATGGCCTTAGTTTTGATGTGGATTCGA
CCAATGGAGAAAGTATATACTGTATCTATTATCAGAAATGTTGATGGAAT
GAGGAGGTATTATAATATTGGTCAATCCTCTATACAAAAAGCTGCTGTGT
TTTGTTTAGAGCGCTATTATATTGATTTCACAGAGTACAACCCATACATG
CCAAGACCTCAATCTcgtacaaaaataaacaaactggCTGGTTTGAAAAT
TTATGACTTGGATGGAAAGGGTGATGGTACCTTAACACAACAAGCCTCTA
AAGCTTTTATTGCAGCCGCTGCAGCAGGACGTCGTAAAGAAGGGAGGAAT
GACCGCTTTTACGAGGAGCAGGAATTAGACAGAAGGATCAGAAAACGTAA
AGCCCGTCTTGTGGCTGCTGCTGAGGAAGCATTTGGTCATGTGGCCAGAC
TCAATGCTTTTGATTCTTCCAAGAAAGCTGATGGTTCAATGGATCCCGAG
GAAGCAGCTCAAGCTGTTTTCCCAACTCTTGCGCGACCCTTGCAAAAATA
TTTGAGAACCACTCGACAGCAGCTTTATTACCCATTGGAATCTATTTTGA
AGCATTTAGCGCATTGTATTTCATATGAATTATCTTCAAAAGCTTTTATT
GAACGCTATACATGTGATCAACCATGCATTTCTTATGTTGGTTATGATGG
CCGACAAGAATGGACATTGGTGAGTGATAGTTCACCTACTCGGCAGCTCA
ATGAAGGAACTGTATTTCAACTCAAGCATGAAGACATTTCGCTTGTTATT
GCAGTTTCAAAGCTGCCTGTATTTGCTATGTCAGAGTTGCCTTTCAATGG
CGATTCAAATAGATTCGTGTTCAGGCTAAATTCTGAAACATCAGTATAAT
GTGGCAGCGCTTGGAAGTAGATTTGTCTTATGTCACAGGAGAGTCATGGT
GGAAGTTATATGCTTGCCTTTCACAGTAGTGATTGAATATGTTTTCAAGT
GCTGTGTTTCAATGGCTTGAAGTGTTTGTCaacaaacatgaaaaagaacC
GAAGACAAACACTCTAAACATAGAAAAACCGCATCGATGGTTTTCGGTTT
TCTTAACAAATTCCTATTTAATAGGTATAccagtgaaatatttttatgag
TGTACGAGTGTACGACCTTGCAAAGGAAAAGAACTTGCAAAGATCGTTTT
TTAGATTTCATACAGAGAGAAAAAATgaacaatttattttatcaCTAACC
GACACTcattcattttatttcaaacCGACTCAAAGAGTCCCAAATGTTAT
GACTATAACGTTCCCAATGTTTTTTTGTAATGAAGATGTgaactaatttt
ttatttaggttttttcgtgcttttttatatttattttaggcttaaattaA
TTTAATACTATCTTCTTTTGGTATGTCTTAATTGACTTTCCCTAAACAGT
GAGAGTTTTTTCTACTCGTCTGCTTTCGTGATGTGTTCCTATTTGAAGGG
GTTTCAACACGCTCAACAAGTTATCTGAGAAAGAGGGAGAANTTTTCTAC
TTGTCTGCTTTCGTGATGTGTTCCTATTTGAATGGGTTTCAAAACGCTCA
ACAAGTTATCTCAGAAAGAGGGAGAGAGAGAAAGATTATTAAAATAAAAG
CCCTTTGTGATTACACTAATAACAAGTTGGAGTTGTTTCACCCttttatc
ttttgttttatagattttcatttctttttatattAAAACAGATCTCTCCA
TGAATGACTTGTTAGAAATTCTATACTgtcttttattgttttgataattt
tagaattaacttttttgtcatCATCGTCGTTTATTATGACTCGAAAGACA
ACGGCGTCCAATATCCAAAACCTGAATATAAATAAAAC Run BLAST on NCBI protein sequence of Strabismus/van Gogh >TCONS_00023719-protein ID=TCONS_00023719-protein|Name=Strabismus/van Gogh|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MDDFDDGVIEVQVIPQDDNWGETATTITETATSVYSDLDDTDPFGEEIEK
HRFQCPNSKQALNILLSVILALMAVVSPIAFVIIPNVSSSLKVTGEECGS
VCEGLYITIAIKEIVLIFGLWALYIRPNKVDLPRLNVFKVGMMVLVYVSI
ICFWLFYSIRMIGNGTNQYLTVSFASSFLDAMLFLHYMALVLMWIRPMEK
VYTVSIIRNVDGMRRYYNIGQSSIQKAAVFCLERYYIDFTEYNPYMPRPQ
SRTKINKLAGLKIYDLDGKGDGTLTQQASKAFIAAAAAGRRKEGRNDRFY
EEQELDRRIRKRKARLVAAAEEAFGHVARLNAFDSSKKADGSMDPEEAAQ
AVFPTLARPLQKYLRTTRQQLYYPLESILKHLAHCISYELSSKAFIERYT
CDQPCISYVGYDGRQEWTLVSDSSPTRQLNEGTVFQLKHEDISLVIAVSK
LPVFAMSELPFNGDSNRFVFRLNSETSV Run BLAST on NCBI transcript from alignment at sc0000460:63984..69321- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023719 ID=TCONS_00023719|Name=TCONS_00023719|organism=Clytia hemisphaerica|type=transcript|length=5338bp|location=Sequence derived from alignment at sc0000460:63984..69321- (Clytia hemisphaerica)
GCTAAGAGAAGTAGAATTTGTGGTCTTCTCGTAGACTCGAATAAATACAA
AAATACAGTGATTTGAGAATGTTATTTTATAGAATGGATTTTATCTCTGT
TATGGTTTGTTTCTTGAAAATATTCAAAAAACCGCTTTTATTTCATGGTT
TATTGTGGTCATTTTGATCTTATCCTGAGTGTTTTTGTATTTTCGTCCTT
CCGCTCTAGCCTCTCTTATCTTTTCTGGGTGAACACAGATGGAATTTCTT
TCCCTTTTTATTCAAAAATCTTTATGATGTAGTTTTATAACTGCAATGGT
TTGGTTGAAAATCTTCACTGTATTTTGAGCTCGTTTGGATGGGAGATTAC
CATCTAAGTTTATTGGGGGGGGTTTCACTTTTACGGTATGACGGTATTGG
GCCTTTTTTTTCCCNACCCCCCCTTTATTAGGTGTTTGTGTTTTTATTGA
ATTTGAGCTTGATAAATTTAGCTAATTTATTAATGGAACCATGTTGTTCT
GGGAATTTTCTCTCTTCCTCTGCTGTTTTGATTTTGTAAAGCAGTCCCTG
AGTTCTTAAGCATTGATTGTCATAATATATATTATAAAATGGACTGGATA
TATATGATAAAGGCGGCCATCGAAAAATTGTTCTGTTCACATCACAGCAG
TTAAAAATACGTGCGGGCCCAGTATGGATTTCGTGTAACCAACGCCAAAG
ATCTTCGGAGTACAACTGAAACGTTTTTGTCGCATTGTGGCGTAAGGGTA
CTTACAAAATTGAAAAATTTAATGTTGGTGCAAAAGAAATTTTGCTTGGC
GTGAGGCTTGCTGTACGGAAAAATATCTTTGGCGCGAGATTTCGTGGAAT
CCATACTGGATGCGGGCGGGCGTACGGGCGGCGGTTGGAAAGATTTCTAG
GTTTTTAAAAATTGCATCATAAAGCCAATTTCTTCTTCTGATTGGGATTG
GGAGGGCTGTATCTGTTTGTGTTCTTGCGAAGTATAGCTAAAATAATGCT
GTTCTCCCCCTACAGTTGCAATCTAATTTAGCAGTGTTATTTGTTTTGTT
TATGTGTTCGTTTGTTCTGCAGAGAAGAGCTAGAGAAAAAGCTATGCAAT
TTGCTTTTTCCAGGATTTTCCCGCTTCTNTTCTCCCCCTACAGTTGCAAT
CTAATTTAGCAGTGTTATTTGTTTTGTTTATGTGTTCGTTTGTTCTGCAG
AGAAGAGCTAGAGAAAAAGCTATGCAATTTGCTTTTTCCAGGATTTTCCC
GCTTCTCCACATCAGGATGGAATTGTCAGTGGAAAATATGATAAGTGTGG
GTGAGACGATTAGAACAATTTTTTGGTGGCCACCTGATGTAATGCCAGAA
ATTATCAGTTTCTTCCTCCTGAACATTTGAGCGTTTGAAACTTTTTCACA
AGATATCACATAAACCATAAAACAGGCCTCCCGAGATGTGATAATTGATC
TTGATTTAACCAATTTTTGGAGATACAAGTATTGGTTTTCCTAATTTTTA
TATAATGAAATCTTATTTTAACAATTATTAGCTAAAATGCGTATCAAAGA
TTAATGCTGGAAAGCGCTATATCGTTTACTTGACTCACAAGCAAAAAAAT
GAGATTCATGAAAAAATAAAGCATTTTCAAAAACTATGAAAAAGATGAAA
AAAATTTGAACCAAGCCAACCTTTAAAAGTAATTTGAAGAACAACTTCCC
AAGAAAAGATCTACAGGAAAGAAGACACCCACCTAGATGCGTCCATCACC
GGATAGGCTATTTTTTTCAAGCCTGAAATTGCAGGAATTTAGGGAGTGAG
TAAGGCTAGAATTTAATTTGGGGGTTGAAGGGAAAAATTATTTTTTGCAG
GCACTTGGTGGTGACAGGGTTATTTTTTGTATGTAGTGTTTTGAGAATGG
TTGGCGTTATTTAAGAAAATCACGAGAGAAACTTAAGTTTAGCAAAAAAC
TTATTTTACAGAGCAGAAATTTTTTTGTCTTGCCAAAATCAGTGCCCTTA
TTAAGGTAATCAGCCCATTCTTGCAACTGTTTATTTTGATGAGAACTAAT
CCAAAATTACTGGCAAAAATGCATTCTCTTTAGTTAACCGACCATAGTTT
TTTGCCTTCCTAGAGTCTTGGTCTTTCTTTGTTTAAAGTTTAGCCGTTTT
ATGACAGGTTAAAGAGAGGTGCTACTGGTCAATATCTCTTAAATTATCTG
GCTCTGAAATTATGTATCAAGGTCACAAAATTACTAATTATTAAATTAAA
TTATTAAAAATATTTTTGACAGCCGTTTTAAGAATTATTCATGCCTTTTT
AGCATATCTGGTGATTGTACACTGCTCGGTAATTAGACACTACACATCTG
AATTATAAAAAATCATGGCAAAATTGCCTTTTTCCTAAAAAAACAAGTCT
CAGACACTCCTGCCTTTCTATAATTTGAACTGTGAATACTAACTTTATGA
CGATTTCTTTACTGACTTTGAAAACCTATGAAAACCTAAATGGTATCACA
GCCAACTTTGTTGGAAGGGATGATACAACTTGTTTTTTGTAGAATTTTTC
TTCTTTATTCTTATCAGTTCCTTGATAGCCTATCTACTAAGCAGGGTGCT
TGGTTATTACTCTTTATCAGATTAATTATTCATCATTAGGAAAGATTAAG
CATTTGTAAACAATCCTTCTTCAAGTAATTTCACCTCATAGCAACAGCAT
CCAAGGATTCATGTTTTCACAATCTGAAATAGTTTGAAATTATCATGATG
ATTCATATTTTTATTCTTCAAAGAAAACAAAGTAAAATGGATGATTTTGA
TGATGGAGTGATTGAAGTTCAAGTCATTCCTCAAGATGATAATTGGGGAG
AAACTGCAACAACCATCACAGGTAACATATCCATTTAAACTGGCAAGACT
CTTACTTTCTGAATAACTTTTACCTTTGTCAATGAAGCTTTTATGAATTA
TTATGTTTCCATGAATAAACAACTTCTTTTTTCTTCTTCTTTTTCAGAAA
CTGCAACATCTGTTTACTCGGACTTGGACGATACTGATCCTTTTGGGGAA
GAAATAGAAAAACATAGATTTCAATGTCCAAATTCTAAACAAGCACTCAA
TATTTTGTTATCTGTAATTCTTGCTTTAATGGCTGTTGTGAGTCCAATTG
CTTTTGTTATCATTCCCAATGTGTCTTCTTCATTGAAAGTTACTGGAGAA
GAGTGTGGGTCAGTTTGCGAAGGATTGTATATAACAATTGCTATCAAAGA
GATTGTTTTAATATTTGGCTTATGGGCTTTATATATCCGACCAAACAAAG
TTGATTTACCACGTTTAAATGTATTCAAAGTTGGAATGATGGTTTTAGTT
TACGTTTCCATAATATGCTTTTGGTTGTTTTACTCAATTCGGATGATTGG
AAATGGGACAAATCAATACTTGACTGTTTCATTTGCCAGTTCATTTTTGG
ATGCTATGTTGTTCCTTCACTACATGGCCTTAGTTTTGATGTGGATTCGA
CCAATGGAGAAAGTATATACTGTATCTATTATCAGAAATGTTGATGGAAT
GAGGAGGTATTATAATATTGGTCAATCCTCTATACAAAAAGCTGCTGTGT
TTTGTTTAGAGCGCTATTATATTGATTTCACAGAGTACAACCCATACATG
CCAAGACCTCAATCTCGTACAAAAATAAACAAACTGGCTGGTTTGAAAAT
TTATGACTTGGATGGAAAGGGTGATGGTACCTTAACACAACAAGCCTCTA
AAGCTTTTATTGCAGCCGCTGCAGCAGGACGTCGTAAAGAAGGGAGGAAT
GACCGCTTTTACGAGGAGCAGGAATTAGACAGAAGGATCAGAAAACGTAA
AGCCCGTCTTGTGGCTGCTGCTGAGGAAGCATTTGGTCATGTGGCCAGAC
TCAATGCTTTTGATTCTTCCAAGAAAGCTGATGGTTCAATGGATCCCGAG
GAAGCAGCTCAAGCTGTTTTCCCAACTCTTGCGCGACCCTTGCAAAAATA
TTTGAGAACCACTCGACAGCAGCTTTATTACCCATTGGAATCTATTTTGA
AGCATTTAGCGCATTGTATTTCATATGAATTATCTTCAAAAGCTTTTATT
GAACGCTATACATGTGATCAACCATGCATTTCTTATGTTGGTTATGATGG
CCGACAAGAATGGACATTGGTGAGTGATAGTTCACCTACTCGGCAGCTCA
ATGAAGGAACTGTATTTCAACTCAAGCATGAAGACATTTCGCTTGTTATT
GCAGTTTCAAAGCTGCCTGTATTTGCTATGTCAGAGTTGCCTTTCAATGG
CGATTCAAATAGATTCGTGTTCAGGCTAAATTCTGAAACATCAGTATAAT
GTGGCAGCGCTTGGAAGTAGATTTGTCTTATGTCACAGGAGAGTCATGGT
GGAAGTTATATGCTTGCCTTTCACAGTAGTGATTGAATATGTTTTCAAGT
GCTGTGTTTCAATGGCTTGAAGTGTTTGTCAACAAACATGAAAAAGAACC
GAAGACAAACACTCTAAACATAGAAAAACCGCATCGATGGTTTTCGGTTT
TCTTAACAAATTCCTATTTAATAGGTATACCAGTGAAATATTTTTATGAG
TGTACGAGTGTACGACCTTGCAAAGGAAAAGAACTTGCAAAGATCGTTTT
TTAGATTTCATACAGAGAGAAAAAATGAACAATTTATTTTATCACTAACC
GACACTCATTCATTTTATTTCAAACCGACTCAAAGAGTCCCAAATGTTAT
GACTATAACGTTCCCAATGTTTTTTTGTAATGAAGATGTGAACTAATTTT
TTATTTAGGTTTTTTCGTGCTTTTTTATATTTATTTTAGGCTTAAATTAA
TTTAATACTATCTTCTTTTGGTATGTCTTAATTGACTTTCCCTAAACAGT
GAGAGTTTTTTCTACTCGTCTGCTTTCGTGATGTGTTCCTATTTGAAGGG
GTTTCAACACGCTCAACAAGTTATCTGAGAAAGAGGGAGAANTTTTCTAC
TTGTCTGCTTTCGTGATGTGTTCCTATTTGAATGGGTTTCAAAACGCTCA
ACAAGTTATCTCAGAAAGAGGGAGAGAGAGAAAGATTATTAAAATAAAAG
CCCTTTGTGATTACACTAATAACAAGTTGGAGTTGTTTCACCCTTTTATC
TTTTGTTTTATAGATTTTCATTTCTTTTTATATTAAAACAGATCTCTCCA
TGAATGACTTGTTAGAAATTCTATACTGTCTTTTATTGTTTTGATAATTT
TAGAATTAACTTTTTTGTCATCATCGTCGTTTATTATGACTCGAAAGACA
ACGGCGTCCAATATCCAAAACCTGAATATAAATAAAAC Coding sequence (CDS) from alignment at sc0000460:63984..69321- >TCONS_00023719 ID=TCONS_00023719|Name=TCONS_00023719|organism=Clytia hemisphaerica|type=CDS|length=2874bp|location=Sequence derived from alignment at sc0000460:63984..69321- (Clytia hemisphaerica)
AAACTGCAACATCTGTTTACTCGGACTTGGACGATACTGATCCTTTTGGG
GAAGAAATAGAAAAACATAGATTTCAATGTCCAAATTCTAAACAAGCACT
CAATATTTTGTTATCTGTAATTCTTGCTTTAATGGCTGTTGTGAGTCCAA
TTGCTTTTGTTATCATTCCCAATGTGTCTTCTTCATTGAAAGTTACTGGA
GAAGAGTGTGGGTCAGTTTGCGAAGGATTGTATATAACAATTGCTATCAA
AGAGATTGTTTTAATATTTGGCTTATGGGCTTTATATATCCGACCAAACA
AAGTTGATTTACCACGTTTAAATGTATTCAAAGTTGGAATGATGGTTTTA
GTTTACGTTTCCATAATATGCTTTTGGTTGTTTTACTCAATTCGGATGAT
TGGAAATGGGACAAATCAATACTTGACTGTTTCATTTGCCAGTTCATTTT
TGGATGCTATGTTGTTCCTTCACTACATGGCCTTAGTTTTGATGTGGATT
CGACCAATGGAGAAAGTATATACTGTATCTATTATCAGAAATGTTGATGG
AATGAGGAGGTATTATAATATTGGTCAATCCTCTATACAAAAAGCTGCTG
TGTTTTGTTTAGAGCGCTATTATATTGATTTCACAGAGTACAACCCATAC
ATGCCAAGACCTCAATCTCGTACAAAAATAAACAAACTGGCTGGTTTGAA
AATTTATGACTTGGATGGAAAGGGTGATGGTACCTTAACACAACAAGCCT
CTAAAGCTTTTATTGCAGCCGCTGCAGCAGGACGTCGTAAAGAAGGGAGG
AATGACCGCTTTTACGAGGAGCAGGAATTAGACAGAAGGATCAGAAAACG
TAAAGCCCGTCTTGTGGCTGCTGCTGAGGAAGCATTTGGTCATGTGGCCA
GACTCAATGCTTTTGATTCTTCCAAGAAAGCTGATGGTTCAATGGATCCC
GAGGAAGCAGCTCAAGCTGTTTTCCCAACTCTTGCGCGACCCTTGCAAAA
ATATTTGAGAACCACTCGACAGCAGCTTTATTACCCATTGGAATCTATTT
TGAAGCATTTAGCGCATTGTATTTCATATGAATTATCTTCAAAAGCTTTT
ATTGAACGCTATACATGTGATCAACCATGCATTTCTTATGTTGGTTATGA
TGGCCGACAAGAATGGACATTGGTGAGTGATAGTTCACCTACTCGGCAGC
TCAATGAAGGAACTGTATTTCAACTCAAGCATGAAGACATTTCGCTTGTT
ATTGCAGTTTCAAAGCTGCCTGTATTTGCTATGTCAGAGTTGCCTTTCAA
TGGCGATTCAAATAGATTCGTGTTCAGGCTAAATTCTGAAACATCAGTAT
AAATGGATGATTTTGATGATGGAGTGATTGAAGTTCAAGTCATTCCTCAA
GATGATAATTGGGGAGAAACTGCAACAACCATCACAGAAACTGCAACATC
TGTTTACTCGGACTTGGACGATACTGATCCTTTTGGGGAAGAAATAGAAA
AACATAGATTTCAATGTCCAAATTCTAAACAAGCACTCAATATTTTGTTA
TCTGTAATTCTTGCTTTAATGGCTGTTGTGAGTCCAATTGCTTTTGTTAT
CATTCCCAATGTGTCTTCTTCATTGAAAGTTACTGGAGAAGAGTGTGGGT
CAGTTTGCGAAGGATTGTATATAACAATTGCTATCAAAGAGATTGTTTTA
ATATTTGGCTTATGGGCTTTATATATCCGACCAAACAAAGTTGATTTACC
ACGTTTAAATGTATTCAAAGTTGGAATGATGGTTTTAGTTTACGTTTCCA
TAATATGCTTTTGGTTGTTTTACTCAATTCGGATGATTGGAAATGGGACA
AATCAATACTTGACTGTTTCATTTGCCAGTTCATTTTTGGATGCTATGTT
GTTCCTTCACTACATGGCCTTAGTTTTGATGTGGATTCGACCAATGGAGA
AAGTATATACTGTATCTATTATCAGAAATGTTGATGGAATGAGGAGGTAT
TATAATATTGGTCAATCCTCTATACAAAAAGCTGCTGTGTTTTGTTTAGA
GCGCTATTATATTGATTTCACAGAGTACAACCCATACATGCCAAGACCTC
AATCTCGTACAAAAATAAACAAACTGGCTGGTTTGAAAATTTATGACTTG
GATGGAAAGGGTGATGGTACCTTAACACAACAAGCCTCTAAAGCTTTTAT
TGCAGCCGCTGCAGCAGGACGTCGTAAAGAAGGGAGGAATGACCGCTTTT
ACGAGGAGCAGGAATTAGACAGAAGGATCAGAAAACGTAAAGCCCGTCTT
GTGGCTGCTGCTGAGGAAGCATTTGGTCATGTGGCCAGACTCAATGCTTT
TGATTCTTCCAAGAAAGCTGATGGTTCAATGGATCCCGAGGAAGCAGCTC
AAGCTGTTTTCCCAACTCTTGCGCGACCCTTGCAAAAATATTTGAGAACC
ACTCGACAGCAGCTTTATTACCCATTGGAATCTATTTTGAAGCATTTAGC
GCATTGTATTTCATATGAATTATCTTCAAAAGCTTTTATTGAACGCTATA
CATGTGATCAACCATGCATTTCTTATGTTGGTTATGATGGCCGACAAGAA
TGGACATTGGTGAGTGATAGTTCACCTACTCGGCAGCTCAATGAAGGAAC
TGTATTTCAACTCAAGCATGAAGACATTTCGCTTGTTATTGCAGTTTCAA
AGCTGCCTGTATTTGCTATGTCAGAGTTGCCTTTCAATGGCGATTCAAAT
AGATTCGTGTTCAGGCTAAATTCTGAAACATCAGTATAAATGGATGATTT
TGATGATGGAGTGATTGAAGTTCAAGTCATTCCTCAAGATGATAATTGGG
GAGAAACTGCAACAACCATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023719-exon-sc0000460-1575043694:67523..69321 | TCONS_00023719-exon-sc0000460-1575043694:67523..69321 | Clytia hemisphaerica | exon |
| TCONS_00023719-exon-sc0000460-1575043694:66451..66548 | TCONS_00023719-exon-sc0000460-1575043694:66451..66548 | Clytia hemisphaerica | exon |
| TCONS_00023719-exon-sc0000460-1575043694:63984..66324 | TCONS_00023719-exon-sc0000460-1575043694:63984..66324 | Clytia hemisphaerica | exon |
| TCONS_00023719-exon-sc0000460-1510915933:67523..69321 | TCONS_00023719-exon-sc0000460-1510915933:67523..69321 | Clytia hemisphaerica | exon |
| TCONS_00023719-exon-sc0000460-1510915933:66451..66548 | TCONS_00023719-exon-sc0000460-1510915933:66451..66548 | Clytia hemisphaerica | exon |
| TCONS_00023719-exon-sc0000460-1510915933:63984..66324 | TCONS_00023719-exon-sc0000460-1510915933:63984..66324 | Clytia hemisphaerica | exon |
| TCONS_00023719-exon-sc0000460-1491911889:67523..69321 | TCONS_00023719-exon-sc0000460-1491911889:67523..69321 | Clytia hemisphaerica | exon |
| TCONS_00023719-exon-sc0000460-1491911889:66451..66548 | TCONS_00023719-exon-sc0000460-1491911889:66451..66548 | Clytia hemisphaerica | exon |
| TCONS_00023719-exon-sc0000460-1491911889:63984..66324 | TCONS_00023719-exon-sc0000460-1491911889:63984..66324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000460 | supercontig | sc0000460:63984..69321 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009539 | VANGL |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007275 | multicellular organism development |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007275 |
multicellular organism development |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00023719 vs. Swiss-Prot (Human)
Match: VANG1 (Vang-like protein 1 OS=Homo sapiens GN=VANGL1 PE=1 SV=1) HSP 1 Score: 345.125 bits (884), Expect = 1.567e-104 Identity = 195/469 (41.58%), Postives = 294/469 (62.69%), Query Frame = 1
Query: 1858 QDDNWGXXXXXXXXXXXSVYSDLDDTDPFGEEIEKH-RFQCPNSKQALNILLSVILALMAVVSPIAFVIIPNVSSSLKVTGEECGSVCEGLYITIAIKEIVLIFGLWALYIRPNKVDLPRLNVFKVGMMVLVYVSIICFWLFYSIRMIGNGTNQYL-TVSFASSFLDAMLFLHYMALVLMWIRPMEKVYTVSIIRNVDGMRRYYNIGQSSIQKAAVFCLERYYIDFTEYNPYMPRPQSRTKINKLAGLKIYDLDGKGDGTLTQQXXXXXXXXXXXGRRKEGRNDRFYEEQELDRRIRKRKARLVAAAEEAFGHVARLNAFDSSKKADGSMDPEEAAQAVFPTLARPLQKYLRTTRQQLYYPLESILKHLAHCISYELSSKAFIERYTCDQPCISYVGYDGRQ----EWTLVSDSSPTRQLNEGTVFQLKHEDISLVIAVSKLPVFAMSELPFNGDSNRFVFRLNSETSV 3246
QDDNWGET T IT T+ S +D +++E C K+ L + ++ L L+ ++PIAF+++P + ++ E CG++CEGL+I++A K ++L+ G WAL+ R + D+PR+ VF+ ++VL+++ ++ +WLFY +R++ + Y V +A S +DA+LF+HY+A+VL+ +R ++ ++T+ ++R+ DG R+Y++G SIQ+AA+ LE YY DFT YNP + +AGLK+Y++DG + Q + AA N+ +YEE E +RR++KRKARLV A EEAF H+ RL A + K MDP EAAQA+FP++AR LQKYLR TRQQ Y+ +ESIL+HLA CI+ ++ KAF+ERY P + YD + +W LVSD + T L +G VF LK D SLV+ V K+P +SE + S++FV RL SETSV
Sbjct: 68 QDDNWGETTTAITGTSEHSISQ-EDIARISKDMEDSVGLDC---KRYLGLTVASFLGLLVFLTPIAFILLPPILWRDEL--EPCGTICEGLFISMAFKLLILLIGTWALFFRKRRADMPRVFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYSLGHLSIQRAALVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAARRR---DSSHNELYYEEAEHERRVKKRKARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPREAAQAIFPSMARALQKYLRITRQQNYHSMESILQHLAFCITNGMTPKAFLERYLSAGPTLQ---YDKDRWLSTQWRLVSDEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPFIILSEEFIDPKSHKFVLRLQSETSV 524
The following BLAST results are available for this feature:
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