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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023744 ID=TCONS_00023744|Name=TCONS_00023744|organism=Clytia hemisphaerica|type=transcript|length=2192bp
GTGGAATGGCTATCACAGCGTTCCACTAGCATCAGAGTCATGCGAAGCTA
CCACCTTTATCACCGAATGGGGACGCTATCGCTACAAGCGCGCTCCACAA
GGCTTCCATGGCTCAAACGATGGTTATACTAAAAGATTTGATGATATAAC
TGTCGATTTTCCCCGTACCGTAAGATGTATTGATGACTCACTACTGTATG
ATAATGACATTTCAAACTCCTTTTGGCACATCATAGCATACATTGAACTC
TGCGCACGTAACGGGATCGTATTTAACcccgaaaaattcaaattcgCACG
CGACACCACCGAATTTGCTGGCTTCGATGTCACACCTGAAGGTTTCAGAC
CTACCGAGAGGATCATGAAAGCGATTCTCGAATTCCCTACGCCAAAGAAC
ATATCCGACATCCGATCATGGTTCGGTCTAGTTGCACAAGTATCCTACGC
ATTCGCCCAAGCTCCCGTGATGGCACCATTCCGAGAGCTCCTAAGTAAAA
AGACCCCGTTTTACTGGGACGAGACACTTCAATCGCTATTCGACAAAACC
AAACACGTGATTATCGATTCGATCAAGGATGGAGTGCAGTCATTCTCTAC
AAACAAAACAACATGCCTCGCTACCGATTGGAGTAAGACCGGAATAGGTT
TCACGTTAACCCAGAAACACTGCCAATGCATCGGTAAAGACCCGCTGTGC
GGACCCGGACACTGGCGTATGATATATGCCGGTTCTAGATTCACCACTGA
AGCAGAAAGCAACTACGCCCCAATTGAAGGCGAAGCCCTCGCCCTGTTAT
TCGGACTTGAAAGCTGTCGCATGTTTGTACTAGGGTGTCCAGACCTCTTA
ATCGCAGTTGACCACGAACCGCTCGTACCGATATTTAACGACAAAGACCt
cgaaaaaattaagaacatcagaCTCTTAAAAATCCGAGAAAAAACACTCC
ACTACCAATTCGTCGTGAAAGCGATCCCAGGGGTGAAAAACATCGGACCG
AATACAGCATCAAGAATCCCACCTGTTGTCAGCTCAAAAGTAGGCTCAAT
CGAAGAGTCACTCCCGACTACATCCCCAGACGACACTATCGTGTCATCAA
TCAACTTTGATACTATTATCAACCATGCGAGCAAAGATGAACAGTATAAT
CAGTTAGTCTCGCTTATCAAAGAAGGCTTCCCCGATGATAAAACCGCAAC
TCCAAAAGCCTTATACGACTTCTGGCCGCTCCGTAAAGAACTCTATACCT
TAAAAAACATAGTGTTTATTGCAAACAAGCCATTGATTCCAAAATCTGTC
AGACGAAACATCCTACACGAACTGCACCTCGGTCATCAAGGTGTATCAAT
GATGAAGTCCAACGCCCGCCAACGATTCTTTTGGCCACACATGAATGCAG
ACATCAACAGCACCCGTTTGAACTGTCAACGCTGCAACCAAACAGCACCC
TCCCAACCAAAGGCACCACTACAACAAAGCGAAGACCCCGAATATCCATT
CCAACAAACAGTAACTGACCTCCTTCACATGGTTGGACACAACTTCATCA
TTTATGCAGACCGTTTTTCTGGCTGGACTGAAGTCGCGGACGCTAAACAA
TCCAACGCCACCGCCATACGCAACACCTTGCGTCGATACTTTGAGACGTT
TGGTGTACCTGAGGAGATTTCATCGGACGGGGGCCCACCATTCAATTCTA
ACGAATACGCCACTTTTCTTAAAGACTGGAACGTAACCCATCGTCTTTCC
TCCGCCTATTACCCCCAAAGCAACGGGAGAGCTGAAGCAGCTGTTAAGAC
CATTAAGCGTATCCTCACCACCAATGTCAGCAGCACTGGATCGCTGGACA
CCGATGCCGTTGCCAAGGCTCTTCTTCTGCACAGGAACACACCATCACCC
GATATCGGTGCATCCCCTGCAGAGCTTCTTTTTGGCAGACCACTTAACGA
CCACCTACCAAAACCTGTTCCGCCACGGAAAATTTGGTCGGAATTAGCAG
ACACACGCGAAGAAGCCTTTGCAAAACGCCGTGCCCAAGCATTAAAACCG
CCAGGAGATCTGTCCCCGCACACACCTTTAGATGTGGGGAGCTCCGTTGC
CATCCAGAATCAAAATGGTCAACATCCTCTTCGATGGGATCGCACAGGCA
TCATTTCTGAAAGGCTCCCTCATGATCAATATCGTGTACTGN Run BLAST on NCBI protein sequence of TCONS_00023744-protein >TCONS_00023744-protein ID=TCONS_00023744-protein|Name=TCONS_00023744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=730bp
WNGYHSVPLASESCEATTFITEWGRYRYKRAPQGFHGSNDGYTKRFDDIT
VDFPRTVRCIDDSLLYDNDISNSFWHIIAYIELCARNGIVFNPEKFKFAR
DTTEFAGFDVTPEGFRPTERIMKAILEFPTPKNISDIRSWFGLVAQVSYA
FAQAPVMAPFRELLSKKTPFYWDETLQSLFDKTKHVIIDSIKDGVQSFST
NKTTCLATDWSKTGIGFTLTQKHCQCIGKDPLCGPGHWRMIYAGSRFTTE
AESNYAPIEGEALALLFGLESCRMFVLGCPDLLIAVDHEPLVPIFNDKDL
EKIKNIRLLKIREKTLHYQFVVKAIPGVKNIGPNTASRIPPVVSSKVGSI
EESLPTTSPDDTIVSSINFDTIINHASKDEQYNQLVSLIKEGFPDDKTAT
PKALYDFWPLRKELYTLKNIVFIANKPLIPKSVRRNILHELHLGHQGVSM
MKSNARQRFFWPHMNADINSTRLNCQRCNQTAPSQPKAPLQQSEDPEYPF
QQTVTDLLHMVGHNFIIYADRFSGWTEVADAKQSNATAIRNTLRRYFETF
GVPEEISSDGGPPFNSNEYATFLKDWNVTHRLSSAYYPQSNGRAEAAVKT
IKRILTTNVSSTGSLDTDAVAKALLLHRNTPSPDIGASPAELLFGRPLND
HLPKPVPPRKIWSELADTREEAFAKRRAQALKPPGDLSPHTPLDVGSSVA
IQNQNGQHPLRWDRTGIISERLPHDQYRVL Run BLAST on NCBI transcript from alignment at sc0000460:225715..227906 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023744 ID=TCONS_00023744|Name=TCONS_00023744|organism=Clytia hemisphaerica|type=transcript|length=2192bp|location=Sequence derived from alignment at sc0000460:225715..227906 (Clytia hemisphaerica)
NCAGTACACGATATTGATCATGAGGGAGCCTTTCAGAAATGATGCCTGTG
CGATCCCATCGAAGAGGATGTTGACCATTTTGATTCTGGATGGCAACGGA
GCTCCCCACATCTAAAGGTGTGTGCGGGGACAGATCTCCTGGCGGTTTTA
ATGCTTGGGCACGGCGTTTTGCAAAGGCTTCTTCGCGTGTGTCTGCTAAT
TCCGACCAAATTTTCCGTGGCGGAACAGGTTTTGGTAGGTGGTCGTTAAG
TGGTCTGCCAAAAAGAAGCTCTGCAGGGGATGCACCGATATCGGGTGATG
GTGTGTTCCTGTGCAGAAGAAGAGCCTTGGCAACGGCATCGGTGTCCAGC
GATCCAGTGCTGCTGACATTGGTGGTGAGGATACGCTTAATGGTCTTAAC
AGCTGCTTCAGCTCTCCCGTTGCTTTGGGGGTAATAGGCGGAGGAAAGAC
GATGGGTTACGTTCCAGTCTTTAAGAAAAGTGGCGTATTCGTTAGAATTG
AATGGTGGGCCCCCGTCCGATGAAATCTCCTCAGGTACACCAAACGTCTC
AAAGTATCGACGCAAGGTGTTGCGTATGGCGGTGGCGTTGGATTGTTTAG
CGTCCGCGACTTCAGTCCAGCCAGAAAAACGGTCTGCATAAATGATGAAG
TTGTGTCCAACCATGTGAAGGAGGTCAGTTACTGTTTGTTGGAATGGATA
TTCGGGGTCTTCGCTTTGTTGTAGTGGTGCCTTTGGTTGGGAGGGTGCTG
TTTGGTTGCAGCGTTGACAGTTCAAACGGGTGCTGTTGATGTCTGCATTC
ATGTGTGGCCAAAAGAATCGTTGGCGGGCGTTGGACTTCATCATTGATAC
ACCTTGATGACCGAGGTGCAGTTCGTGTAGGATGTTTCGTCTGACAGATT
TTGGAATCAATGGCTTGTTTGCAATAAACACTATGTTTTTTAAGGTATAG
AGTTCTTTACGGAGCGGCCAGAAGTCGTATAAGGCTTTTGGAGTTGCGGT
TTTATCATCGGGGAAGCCTTCTTTGATAAGCGAGACTAACTGATTATACT
GTTCATCTTTGCTCGCATGGTTGATAATAGTATCAAAGTTGATTGATGAC
ACGATAGTGTCGTCTGGGGATGTAGTCGGGAGTGACTCTTCGATTGAGCC
TACTTTTGAGCTGACAACAGGTGGGATTCTTGATGCTGTATTCGGTCCGA
TGTTTTTCACCCCTGGGATCGCTTTCACGACGAATTGGTAGTGGAGTGTT
TTTTCTCGGATTTTTAAGAGtctgatgttcttaattttttcgaGGTCTTT
GTCGTTAAATATCGGTACGAGCGGTTCGTGGTCAACTGCGATTAAGAGGT
CTGGACACCCTAGTACAAACATGCGACAGCTTTCAAGTCCGAATAACAGG
GCGAGGGCTTCGCCTTCAATTGGGGCGTAGTTGCTTTCTGCTTCAGTGGT
GAATCTAGAACCGGCATATATCATACGCCAGTGTCCGGGTCCGCACAGCG
GGTCTTTACCGATGCATTGGCAGTGTTTCTGGGTTAACGTGAAACCTATT
CCGGTCTTACTCCAATCGGTAGCGAGGCATGTTGTTTTGTTTGTAGAGAA
TGACTGCACTCCATCCTTGATCGAATCGATAATCACGTGTTTGGTTTTGT
CGAATAGCGATTGAAGTGTCTCGTCCCAGTAAAACGGGGTCTTTTTACTT
AGGAGCTCTCGGAATGGTGCCATCACGGGAGCTTGGGCGAATGCGTAGGA
TACTTGTGCAACTAGACCGAACCATGATCGGATGTCGGATATGTTCTTTG
GCGTAGGGAATTCGAGAATCGCTTTCATGATCCTCTCGGTAGGTCTGAAA
CCTTCAGGTGTGACATCGAAGCCAGCAAATTCGGTGGTGTCGCGTGcgaa
tttgaatttttcgggGTTAAATACGATCCCGTTACGTGCGCAGAGTTCAA
TGTATGCTATGATGTGCCAAAAGGAGTTTGAAATGTCATTATCATACAGT
AGTGAGTCATCAATACATCTTACGGTACGGGGAAAATCGACAGTTATATC
ATCAAATCTTTTAGTATAACCATCGTTTGAGCCATGGAAGCCTTGTGGAG
CGCGCTTGTAGCGATAGCGTCCCCATTCGGTGATAAAGGTGGTAGCTTCG
CATGACTCTGATGCTAGTGGAACGCTGTGATAGCCATTCCAC Coding sequence (CDS) from alignment at sc0000460:225715..227906 >TCONS_00023744 ID=TCONS_00023744|Name=TCONS_00023744|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at sc0000460:225715..227906 (Clytia hemisphaerica)
CAGTACACGATATTGATCATGAGGGAGCCTTTCAGAAATGATGCCTGTGC
GATCCCATCGAAGAGGATGTTGACCATTTTGATTCTGGATGGCAACGGAG
CTCCCCACATCTAAAGGTGTGTGCGGGGACAGATCTCCTGGCGGTTTTAA
TGCTTGGGCACGGCGTTTTGCAAAGGCTTCTTCGCGTGTGTCTGCTAATT
CCGACCAAATTTTCCGTGGCGGAACAGGTTTTGGTAGGTGGTCGTTAAGT
GGTCTGCCAAAAAGAAGCTCTGCAGGGGATGCACCGATATCGGGTGATGG
TGTGTTCCTGTGCAGAAGAAGAGCCTTGGCAACGGCATCGGTGTCCAGCG
ATCCAGTGCTGCTGACATTGGTGGTGAGGATACGCTTAATGGTCTTAACA
GCTGCTTCAGCTCTCCCGTTGCTTTGGGGGTAATAGGCGGAGGAAAGACG
ATGGGTTACGTTCCAGTCTTTAAGAAAAGTGGCGTATTCGTTAGAATTGA
ATGGTGGGCCCCCGTCCGATGAAATCTCCTCAGGTACACCAAACGTCTCA
AAGTATCGACGCAAGGTGTTGCGTATGGCGGTGGCGTTGGATTGTTTAGC
GTCCGCGACTTCAGTCCAGCCAGAAAAACGGTCTGCATAAATGATGAAGT
TGTGTCCAACCATGTGAAGGAGGTCAGTTACTGTTTGTTGGAATGGATAT
TCGGGGTCTTCGCTTTGTTGTAGTGGTGCCTTTGGTTGGGAGGGTGCTGT
TTGGTTGCAGCGTTGACAGTTCAAACGGGTGCTGTTGATGTCTGCATTCA
TGTGTGGCCAAAAGAATCGTTGGCGGGCGTTGGACTTCATCATTGATACA
CCTTGATGACCGAGGTGCAGTTCGTGTAGGATGTTTCGTCTGACAGATTT
TGGAATCAATGGCTTGTTTGCAATAAACACTATGTTTTTTAAGGTATAGA
GTTCTTTACGGAGCGGCCAGAAGTCGTATAAGGCTTTTGGAGTTGCGGTT
TTATCATCGGGGAAGCCTTCTTTGATAAGCGAGACTAACTGATTATACTG
TTCATCTTTGCTCGCATGGTTGATAATAGTATCAAAGTTGATTGATGACA
CGATAGTGTCGTCTGGGGATGTAGTCGGGAGTGACTCTTCGATTGAGCCT
ACTTTTGAGCTGACAACAGGTGGGATTCTTGATGCTGTATTCGGTCCGAT
GTTTTTCACCCCTGGGATCGCTTTCACGACGAATTGGTAGTGGAGTGTTT
TTTCTCGGATTTTTAAGAGtctgatgttcttaattttttcgaGGTCTTTG
TCGTTAAATATCGGTACGAGCGGTTCGTGGTCAACTGCGATTAAGAGGTC
TGGACACCCTAGTACAAACATGCGACAGCTTTCAAGTCCGAATAACAGGG
CGAGGGCTTCGCCTTCAATTGGGGCGTAGTTGCTTTCTGCTTCAGTGGTG
AATCTAGAACCGGCATATATCATACGCCAGTGTCCGGGTCCGCACAGCGG
GTCTTTACCGATGCATTGGCAGTGTTTCTGGGTTAACGTGAAACCTATTC
CGGTCTTACTCCAATCGGTAGCGAGGCATGTTGTTTTGTTTGTAGAGAAT
GACTGCACTCCATCCTTGATCGAATCGATAATCACGTGTTTGGTTTTGTC
GAATAGCGATTGAAGTGTCTCGTCCCAGTAAAACGGGGTCTTTTTACTTA
GGAGCTCTCGGAATGGTGCCATCACGGGAGCTTGGGCGAATGCGTAGGAT
ACTTGTGCAACTAGACCGAACCATGATCGGATGTCGGATATGTTCTTTGG
CGTAGGGAATTCGAGAATCGCTTTCATGATCCTCTCGGTAGGTCTGAAAC
CTTCAGGTGTGACATCGAAGCCAGCAAATTCGGTGGTGTCGCGTGcgaat
ttgaatttttcgggGTTAAATACGATCCCGTTACGTGCGCAGAGTTCAAT
GTATGCTATGATGTGCCAAAAGGAGTTTGAAATGTCATTATCATACAGTA
GTGAGTCATCAATACATCTTACGGTACGGGGAAAATCGACAGTTATATCA
TCAAATCTTTTAGTATAACCATCGTTTGAGCCATGGAAGCCTTGTGGAGC
GCGCTTGTAGCGATAGCGTCCCCATTCGGTGATAAAGGTGGTAGCTTCGC
ATGACTCTGATGCTAGTGGAACGCTGTGATAGCCATTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023744-exon-sc0000460-1491911889:225715..227906 | TCONS_00023744-exon-sc0000460-1491911889:225715..227906 | Clytia hemisphaerica | exon |
| TCONS_00023744-exon-sc0000460-1510915933:225715..227906 | TCONS_00023744-exon-sc0000460-1510915933:225715..227906 | Clytia hemisphaerica | exon |
| TCONS_00023744-exon-sc0000460-1575043694:225715..227906 | TCONS_00023744-exon-sc0000460-1575043694:225715..227906 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000460 | supercontig | sc0000460:225715..227906 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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