TCONS_00023746 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023746
Unique Name	TCONS_00023746
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	217

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000461:56686..61523+

transcript sequence

>TCONS_00023746 ID=TCONS_00023746|Name=TCONS_00023746|organism=Clytia hemisphaerica|type=transcript|length=217bp
CTACATTCAACTATTTTATCTTCTCCTTGTGTCGACTTTATGCCACGCTG
CTACAATTACAGTTGAGCGGAATTATGATGATCTCAACGACCGATTCACC
TTAGGATCTAAGAACCCTTGGGATTATCAATGCAATGAAGGTGATATGTG
TTCCTGTTATTACCGTGGAACATATTCGAGTCCTGAAAATAAACAAGCAC
GATGCTATGGAAACGGG

Run BLAST on NCBI

transcript from alignment at sc0000461:56686..61523+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023746 ID=TCONS_00023746|Name=TCONS_00023746|organism=Clytia hemisphaerica|type=transcript|length=4838bp|location=Sequence derived from alignment at sc0000461:56686..61523+ (Clytia hemisphaerica)
CTACATTCAACTATTTTATCTTCTCCTTGTGTCGACTTTATGCCACGCTG
CTACAATTACAGTTGAGCGGAATTATGATGATCTCAACGACCGATTCACC
TTAGGTaagattaaaggttttatttttacaaaagtcttcccgtttcatat
cagacacatatttcatatcgggacagtgtcttcctattgttatgttatgc
tgatatataagcaaaaaatctATCTGACAaatcttgcttcacatccgtgt
caatccaatgtgcaaaagcttgtgaattaaaattgatgagtaagcaaaca
atatcgttctttcttaaaaacaaaacctttaattcacGTTTGTAATTACT
GTAAAGCCTTGGGGACacgaaaactttttttcgtgTTGATGCAATATGCA
AAAGGAtaaaaattgattcgaatcaattttgctccattatCCCAAGAACA
AAAGTGAGAGACACACAAATGTTATCAAAAGTGTGGTCGATTTCACTTTT
aatggtagaaagaaaaaacaCGACAAGACACGAggaagcgtttcaggttg
gtgggatagagcatattgctttgcaccaacgcgaaaaaaaacttctcgtg
tccctaAGCCTTAATAtcccttttctttttttagaatcttattcaaaagt
ggattactcaaaatgatttagaacatttttgtatcaaaattaCTTACATA
AGTCtcagtagcctggatatccaagctcaaaattttagaaaaaacaaaaa
atacctcaacatatacaaagttctaaaattatagagcttggtctccctag
agaatgaaagtgaaaacccatgtttcctagccaacccagggcagcaaaac
agaaattaataaaaagcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaactatttaaaacatccaaa
gattacaccaaagtccttaaaaaagtttgcatgcattatcatgaccaacc
atgttttcttggaaaatgaacttgcctctgttttcttctttttcattttt
tcatgtaACATAAAGCCCTaacttcactagcaactggaagactatcctat
ttttcctttagaattgctccgcgctgtgtagattggcctttacggcttta
gcgaagtgagcgcaagcaagcggactgaaTTCCCTTAAAGGTGGAAGAGC
TTAAATCAGCCATTTATGCCCTAGAAActttagaataacttttaaccccc
tggaaatatgaaaataaaacccTAGAACCCTAGGAAATCTTCTtggatta
ccccctggaaatgtttgtTCACCATTTGTATGGATATACAATGGAATAGC
CTATTGGTAGATAAACTTATCAACTTTCAGTCAGCTTCATTGCATTTAAT
GAATATGGAGATTCCACTGCCAAAGTTAAGACGAATATTTTGTACAATtt
atttaaattaaattaaaagaaagatacTTTGATTTATTGTTTGGAACTTA
AAGTTTCATATCGGCCGTATGGACGACAATCATTagctaaaaaaaatgaa
aaaaacttattaaattcatttttaNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNACCtaggtgttttgaggaaagtct
ctcctagattaATCCATtaaatttactctcctggaaaaaaagaacagata
tttaaaaaaaatctgccggcggctgctcttgaGACTCTAAAGACACTTAA
GTCTTtgggaaaattgacaaaagtaCTCACAAAATGAAGATTAAagtaag
aacatattaagagaATTTTTGGCCATGAAACTAGCAAAATCAAAGCACCC
AAATTctaagaaaaattgacaaaagtactcacaaaatgattaaagtaaga
acatgttaagagcatttttagccatgAAACTAGCAAAATCAAAGCACCCA
AATTctaagaaaaattgacaaaaatactcacaaaatgattaaagtaagaa
catattaagagcATTTTTGGCCATGAAACTAGCAAAATCAAAGCACCCAA
ATTCTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacggctttagc
gaagtgagcgcaagcaagcggactgaattcccttaaagagaatgcaaatc
gctctagggagaccaggctaaAGTCTCAGAAGAGTTTTAAACAACTGGAA
ATAGAAAATTATACAACAGACGCCGTGGCTCGACATTTTAAGTGGTCGGG
CCACATaatatagtgtctaaggaggcgccaccatggttggggccgagggg
gtagaaaattttcaaatttcactcctctagattggctaaaacagccccTT
TTCCTGAAGAAGATATCTTGacaaatccataaaatttgttccaaaagaaa
aatttagtcAGCAAATTTATTAATGTTAGACTGTGTTTTGTAGAGCCTTA
AATGATAAtgtataaaatattttcatacaaTGATTAGTCAAGATGGATGA
AAtatatgaaataaaaagaagtttACAAATCGTTTTCTGTGAATTTGCCG
AAAATATTTACATAGTCGCTCAGGTTGAACTCTAACAAACTCATTGGCAA
TATCAATCAGGGATAGTGAGTTTAATGTTTCTTTGTGTTCGTCATAGttc
catttttttttctaactgacttttcaaaacatttgaaaaattaatttttt
acttcaaaaaaaattctttactctGAAAAAAAGCCGACCGGCCCTACCGC
TGCCTCGGCGCCTGTACAAACTACATGAGGATATGTGCTCTCCATCTTCG
ATTCTTTGGATATTAATGATATTGAAACATGCGCGATAAAAATTTTACAG
TTTGTCTCCACAgcttaattttcaaagaaagctTAGCTGTGGTGTTCACG
GTATTTTAGGGGTGCCATTTAAGGCTTTCCAGACtccaagagcagccacc
ggctagaaattatgaaatatctgttcttgaggtccctttctcctggaaaa
aactatctgttctgtatcctgggctctcctggattatatcatNCCCAAAT
TCTAAGAAAAATTGACGAAAGTACTcacaaaatgattaaaaataagaaca
tgttaagagcatttttagccatgAAACTAGCAAAATCAAAGCACccaaat
tcttagaaaaattgacaaaaatactcacaaaatgattaaaaataagaaca
tgttaacaACACTTTTAACcatgaaactaaaaaaaatcaaaaacatataA
AAGCTGAAAAAATCTTTGACGTTCTAAAGTTAAACTATTTACTTGTCATT
TCTTAGGATCTAAGAACCCTTGGGATTATCAATGCAATGAAGGTGATATG
TGTTCCTGTTATTACCGTGGAACATATTCGAGTCCTGAAAATAAACAAGC
ACGATGCTATGGAAACGGGCGATATNGTTATTACCGTGGAACATATTCGA
GTCCTGAAAATAAACAAGCACGATGCTATGGAAACGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013341	XLOC_013341	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023746-exon-sc0000461-1491911889:56686..56789	TCONS_00023746-exon-sc0000461-1491911889:56686..56789	Clytia hemisphaerica	exon
TCONS_00023746-exon-sc0000461-1510915933:56686..56789	TCONS_00023746-exon-sc0000461-1510915933:56686..56789	Clytia hemisphaerica	exon
TCONS_00023746-exon-sc0000461-1575043694:56686..56789	TCONS_00023746-exon-sc0000461-1575043694:56686..56789	Clytia hemisphaerica	exon
TCONS_00023746-exon-sc0000461-1491911889:61342..61408	TCONS_00023746-exon-sc0000461-1491911889:61342..61408	Clytia hemisphaerica	exon
TCONS_00023746-exon-sc0000461-1510915933:61342..61408	TCONS_00023746-exon-sc0000461-1510915933:61342..61408	Clytia hemisphaerica	exon
TCONS_00023746-exon-sc0000461-1575043694:61342..61408	TCONS_00023746-exon-sc0000461-1575043694:61342..61408	Clytia hemisphaerica	exon
TCONS_00023746-exon-sc0000461-1491911889:61478..61523	TCONS_00023746-exon-sc0000461-1491911889:61478..61523	Clytia hemisphaerica	exon
TCONS_00023746-exon-sc0000461-1510915933:61478..61523	TCONS_00023746-exon-sc0000461-1510915933:61478..61523	Clytia hemisphaerica	exon
TCONS_00023746-exon-sc0000461-1575043694:61478..61523	TCONS_00023746-exon-sc0000461-1575043694:61478..61523	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000461	supercontig	sc0000461:56686..61523 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	8.61895	6.44004	0	0	0	0	25.6016	19.0738	0	0	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00023746 vs. Swiss-Prot (Human)

BLAST of TCONS_00023746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00023746 (transcript) - C. hemisphaerica