TCONS_00023747 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023747
Unique Name	TCONS_00023747
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	361

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000461:62286..66502+
coding sequence from alignment at sc0000461:62286..66502+

transcript sequence

>TCONS_00023747 ID=TCONS_00023747|Name=TCONS_00023747|organism=Clytia hemisphaerica|type=transcript|length=361bp
CCAGAAAATTTGGTTCTGGAATTTGAAAAGAGGAACAGAAAGAGGAATTT
ATGAAAAAGATTATTCTGAATctgcaataaaatattttgaagtggACTCC
GGTTATATGATTGTCACAGGATTACCAGCAAACTGGGCAGGACAGCTTGT
TATTGCAGTGTTAAACACAGGAAAACACATCGTCTTCAAAGTCACTGGCA
CAATAACATATCCTTTCGATTTCGAAAGTATTTTCACAAAACCAACTACC
ACTACAACTGCAActacaacaacaataacaactgCTGCTCCAACTACCAC
CACGACTGATGTCCCAAAGACCACGTCCTCAATagctacaacaacaacaa
caacaacaaga

Run BLAST on NCBI

protein sequence of TCONS_00023747-protein

>TCONS_00023747-protein ID=TCONS_00023747-protein|Name=TCONS_00023747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
QKIWFWNLKRGTERGIYEKDYSESAIKYFEVDSGYMIVTGLPANWAGQLV
IAVLNTGKHIVFKVTGTITYPFDFESIFTKPTTTTTATTTTITTAAPTTT
TTDVPKTTSSIATTTTTTTR

Run BLAST on NCBI

transcript from alignment at sc0000461:62286..66502+

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023747 ID=TCONS_00023747|Name=TCONS_00023747|organism=Clytia hemisphaerica|type=transcript|length=4217bp|location=Sequence derived from alignment at sc0000461:62286..66502+ (Clytia hemisphaerica)
CCAGAAAATTTGGTTCTGGAATTTGAAAAGAGGAACAGAAAGAGGAATTT
ATGAAAAAGATTATTCTGAATctgcaataaaatattttgaagtggACTCC
GGTTATATGGTATGAAGACGTTGAAATTCTAATTTACAGGCCCGtggagg
gggtactagggttggcggatgaggggtatgaGCGGATACGTGACTTCcta
aaaccgacccttagagacaTTGACTTTTTCCGAAAAAGGTGACTCTTAGA
GAGACAAAATTACTTAAAAAGTACACTCATttcgttttataagcataacg
tttataagcatactgaagctcaaatttccagaaaaattaagcatatgcta
agcataccttgaggctcaaccaaagaaatttttagaatcataatttccaa
aacttcaaaaaataccagaagaatgaagaagaaaattacaaacaaaattg
gtgattttatttttgtttaatctcttataaataacacaacttataataac
aacaacatttgaaaacaatagaatgtcttcatttctctcaagattaaaga
taggggaaaatgcgcgaaattttttacccccttcataatttttttaccaa
gcatagggttaagcatagtcgaggctcaaaattgagctttacttaagcat
agtgagcttcagccgaaacttaccgtatgcttataaaacgaaATGAGTGT
AACCCTCAGAGAGACATTTCACAAAATTTCTTcgattttcaaaacaattc
tCTAAGACTTTCGAAAAACATTCTTACTTTCTTAACTCTTCGTTCTTCTT
AGGcttgattttgtgaaaaaaaactcTTATAGAGGCTTCATGAAGCCCAA
TCTAATTCAAACGAGTTATAGaccaaaaatgatgatttctaactcaaact
ggacattacaggagggcttcgccctcctacatagcccatgacCAATATAC
TCGTCACTTAAAAGGTTAAACGAAATAAATTATGAACAAGTAGTGTTCTT
TTAATGtcattcaaatattttgatatgAATAAATCGAGGTAGTTGAATCT
GATATTACAGTATCCCAcacctctttaactcgaaaaagttttttggtcCC
TCAATTAACAACACCTTATAAACCAATGTACACCCCTGTGCCACAGACCT
GCTAGAGCCCGAGCGCCTctggaaaatttagccaaaatttcttccgcggt
ggcaaaaataccctaaaatttcagccacactgagaaattgactttgtttt
catctctatttgaaattcattgaGAAGAAATTTCACTCCAAAAGCATCTG
CACTGGATTTTTTCGATCTGGAAGCAATTACTACATTATTGGGGAAAAAC
TTCGTCggagaaaagtgacgaaattttggccaaatgacgaatatttttcc
cagacgaaaattttccccggccttaatgcgtttaccaactaccagcaagt
gacgaatttttttccccgacgaatattttccccgaccaaattttccccga
taaggtatcccCATTTGGACATCAATAGAAATTATCATCCGCATTGCGGG
AAGAAGTTCCACctgggctgcgagacaggggagTTTTCTGGTCCAAAAAA
GCATTACAAACCATCTCCATAACTTCCTTCCATCATTCATTCCCTTTTTC
CACAGAGTTCCCCACGCGTGTTTGACAAACGGAGACATAACTGTAGTTTG
TTTGATATTCAGATTGTCACAGGATTACCAGCAAACTGGGCAGGACAGCT
TGTTATTGCAGTGTTAAACACAGGAAAACACATCGTCTTCAAAGTCACTG
GCACAATAACATGTAAGACAGTACCAAAATTCTTACTTGATTTGAAACAA
Tttgacattttcataaattacgtcacgaacatcacttacctcatattcaa
acaattttcttGTTGATCATACATCCCTTGagatattaaattattttttt
ttttaatataacgTAGTTGCAATAAAAtatgctgggagttaatcatcatg
gcaataatttcaaaacgaggcaagtgatgaaaaggtctatttgaatTACT
GAAACGTGTGAATCCCAAAACTCGAACCGAGTCCCTTAGTTAACTTTTTT
GTGATTCTAATAGAGCTTACACGTTAGAattttactttttgataaataac
gagattgctcacgggaattttttgacccgcattCCCCGCGATCGTGTTTA
ATCGCCCGTGTGTGTACGCTCTGTGAATTCTGTCTGCTGTATAATGGGTA
CTGTATACAAGAAAAAGCTCCTCTCTTCAGTCATTTGAGAATTTAAGGAG
ATTGGAGAGTGTCCTAACAGANCTACAGATCATGGCGAATAAAATTATGG
TCATCCGTATTAATCATTGTTCGAAATGTGACAGGTTGAGTGGCCGAGTG
GATAAGGCGACGCACTTGCTTACAAGGGAATGATGTTTTtgagagttcga
atcctataTGGTACGGTGAAGTGTGtgtcattttgtcagcattggccaaa
ctttttctggttttatgagctcttattgatatttttgaaaattcccgtta
tttttttaagaaacaaaaattNgaaaaatctagatattttgaccaaagct
agaattttgaccattttttacaCGAAAAGGATAGAAACttttggggaaaa
tgcactctaagggtatgattttcactgatttttgctgcactgtaagggtg
caattttaaaagccaatttttggcccgcacataccgtcNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAcgc
agctaaaaaatgattgacggGTCTAAAGTATGATTGACAGGTGCGGGTTT
GCTCGCGCGGGTTAAAAATtctcgtgagcaatctcgttatttatcaccAT
GTAGAATTTTATCACTAccatcaataaaatcaaaaaagtggtgcaagtgg
ctctgCTTATGAGGttgaccgtagcatgaaggtagagcacccagctacgg
tgcgcaaggtcaTCGGTTCGATTCCCAGGCGGGGCCATACCAAAGATTAC
CAAAATGATGCTTGAAGTCTCTCTGCTTGAtactcagcaactaaagagac
ggatcaagagTAAGTGGGGAAATCcggggaaaggagtggcgccctccttt
accttcgggtagacagctatacgaaaagggagtcTTCGGGGCGccttcga
ctgcggtcgcaaacttacttactcaTAAGAGGTTGACAGATCATATAGGA
CAGTAAGGGAAAAAGGGTTTATCAAGTGAAGTGTCTCAGATATCAATTGG
GGGGGGGTTAAGGTATGAGATTGACAAATCATATCGTAACCTGTTTGAAG
GCTTGGCGAAACTTTATGTGGTGACTATTTTCTTCTGCTGGCTAATGATC
TGTCTATCTTCTCAGATCCTTTCGATTTCGAAAGTATTTTCACAAAACCA
ACTACCACTACAACTGCAActacaacaacaataacaactgCTGCTCCAAC
TACCACCACGACTGATGTCCCAAAGACCACGTCCTCAATagctacaacaa
caacaacaacaacaaga

Coding sequence (CDS) from alignment at sc0000461:62286..66502+

>TCONS_00023747 ID=TCONS_00023747|Name=TCONS_00023747|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000461:62286..66502+ (Clytia hemisphaerica)
CAGAAAATTTGGTTCTGGAATTTGAAAAGAGGAACAGAAAGAGGAATTTA
TGAAAAAGATTATTCTGAATctgcaataaaatattttgaagtggACTCCG
GTTATATGATTGTCACAGGATTACCAGCAAACTGGGCAGGACAGCTTGTT
ATTGCAGTGTTAAACACAGGAAAACACATCGTCTTCAAAGTCACTGGCAC
AATAACATATCCTTTCGATTTCGAAAGTATTTTCACAAAACCAACTACCA
CTACAACTGCAActacaacaacaataacaactgCTGCTCCAACTACCACC
ACGACTGATGTCCCAAAGACCACGTCCTCAATagctacaacaacaacaac
aacaacaagaCAGAAAATTTGGTTCTGGAATTTGAAAAGAGGAACAGAAA
GAGGAATTTATGAAAAAGATTATTCTGAATctgcaataaaatattttgaa
gtggACTCCGGTTATATGATTGTCACAGGATTACCAGCAAACTGGGCAGG
ACAGCTTGTTATTGCAGTGTTAAACACAGGAAAACACATCGTCTTCAAAG
TCACTGGCACAATAACATATCCTTTCGATTTCGAAAGTATTTTCACAAAA
CCAACTACCACTACAACTGCAActacaacaacaataacaactgCTGCTCC
AACTACCACCACGACTGATGTCCCAAAGACCACGTCCTCAATagctacaa
caacaacaacaacaacaagaCAGAAAATTTGGTTCTGGAATTTGAAAAGA
GGAACAGAAAGAGGAATTTATGAAAAAGATTATTCTGAATctgcaataaa
atattttgaagtggACTCCGGTTATATGATTGTCACAGGATTACCAGCAA
ACTGGGCAGGACAGCTTGTTATTGCAGTGTTAAACACAGGAAAACACATC
GTCTTCAAAGTCACTGGCACAATAACATATCCTTTCGATTTCGAAAGTAT
TTTCACAAAACCAACTACCACTACAACTGCAActacaacaacaataacaa
ctgCTGCTCCAACTACCACCACGACTGATGTCCCAAAGACCACGTCCTCA
ATagctacaacaacaacaacaacaacaaga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013342	XLOC_013342	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023747-protein	TCONS_00023747-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023747-exon-sc0000461-1491911889:62286..62394	TCONS_00023747-exon-sc0000461-1491911889:62286..62394	Clytia hemisphaerica	exon
TCONS_00023747-exon-sc0000461-1510915933:62286..62394	TCONS_00023747-exon-sc0000461-1510915933:62286..62394	Clytia hemisphaerica	exon
TCONS_00023747-exon-sc0000461-1575043694:62286..62394	TCONS_00023747-exon-sc0000461-1575043694:62286..62394	Clytia hemisphaerica	exon
TCONS_00023747-exon-sc0000461-1491911889:63998..64097	TCONS_00023747-exon-sc0000461-1491911889:63998..64097	Clytia hemisphaerica	exon
TCONS_00023747-exon-sc0000461-1510915933:63998..64097	TCONS_00023747-exon-sc0000461-1510915933:63998..64097	Clytia hemisphaerica	exon
TCONS_00023747-exon-sc0000461-1575043694:63998..64097	TCONS_00023747-exon-sc0000461-1575043694:63998..64097	Clytia hemisphaerica	exon
TCONS_00023747-exon-sc0000461-1491911889:66351..66502	TCONS_00023747-exon-sc0000461-1491911889:66351..66502	Clytia hemisphaerica	exon
TCONS_00023747-exon-sc0000461-1510915933:66351..66502	TCONS_00023747-exon-sc0000461-1510915933:66351..66502	Clytia hemisphaerica	exon
TCONS_00023747-exon-sc0000461-1575043694:66351..66502	TCONS_00023747-exon-sc0000461-1575043694:66351..66502	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000461	supercontig	sc0000461:62286..66502 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	6.41264	9.46715	0	0	0	0	39.5329	19.9551	0.22567	0	0	0	0	0.223653	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00023747 vs. Swiss-Prot (Human)

BLAST of TCONS_00023747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00023747 (transcript) - C. hemisphaerica