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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023754 ID=TCONS_00023754|Name=TCONS_00023754|organism=Clytia hemisphaerica|type=transcript|length=1750bp
tcttcggGAATGATCCAAACTGAAGAATCAAATGAAGGTCAAAGCGCTCC
AACCCTCATGGAAACAGACGTTGAAACCAGCTTACAGGCTCCTCAAGCTT
ACATGTCACAGTTACAGTCAGCACTTGAAAACCAACAGCAACCATTGTCG
GACTCCAACAATACAGAACCATACATGAATCATGACTTCTTTGCAAgcca
gcaacaacaacaacaacaacaaacaatcGAATACAATAACATCTTACAAG
ACATCAATCAAATGTACGCACTTATGTCACAACAACCTGGATTCCAATAC
CAAGACTTCGCCAACGCCTATTACAACCAATTCTTTTACAACACATGTCA
AACACAAATGCAAATGCTCCCCGAATCGGGCGCTAATCTTAGTAGTCAAT
ACACGCCATTCCAAACCATAGCAACGCCTATAATTCACCAAGAAATAGAT
CAAGGACGAGTCGCAGACCTGGAAACCATGACAACAAACGTGAATGAGCT
GTTGGGTACCGTTGATATGACGAACGATTTGTTTTCGAATACGCTGTTGA
AGAATTGTCCTGAGAAACGAAAAGGAAGATCAAAGAAAGAAGATTATAGT
GAGGAGAGATTGGAAGAAGTAGCGGCTGCTTGTTTACCTGATGCTTTTGa
cctttggaaagaaaaatacAGAACTCTGGTGATCGAAGAGTATCCGAATG
CGTCACGTAAAGAAGTAGACGATCGGTTGACGGAGATTTGGTGCCGACTT
CCCGACATGCACCGACGTAGATATTTCGTGAAAGCCGAGAAACTTGCGCG
ACGTTATAATTCAACTGCAGCCTTTAGTTATATGAATCGATTCAAAAACA
AACACCCGGCGCATAGATACAATGAGCCAAACGTACCGAACGATTCGAAC
CGCGTGCACTGCCCGACACCTATTCGTACGACACCGAAGGGCACTCCCGA
TAAAACCACCGAGCACGAGAACGATAGCCAAAAATCGTCAGATAGTGACG
AGAATAGTAACGACTCTTTAACGAATTCGAACGACTTTGATTACAAAAAC
GCATTAAAAGAAACGCAAACGTACAATTCACCCGTCAAGNTGATTACAAA
AACGCGTTAAAAGAAACGCAAACGTACAATTCACCCGTCAAGAAAGCATT
AACAAAGAAACTAAACCAACGCCAAAAACAACAAGAAGAAATTCAATCTG
GTTCAACcacgaaaacaattaaaaactcGGGTGGTGGATTGAATTTACCA
GATGAAAGCATATTCGCAACAGGTGTTCTAATGGACATTATGATGACAGA
TGGAGATTCTTCACAACAAATCAAAGATGATGAATCAACACCACAGTTGA
AACCATCTTCTTGGTCACCGACTGAAATGATGTCCGAACTGACAACACTG
GATATCAGCGCCTTGGATGATTATCTGACCGGCACCGATACATCATTTAT
TGATGAGTCATCATCGAACGCATCCGGTAAGAAGAAACGTAGACCATACA
AACGTAAAAttggaaaagagaaaaaaacaaaagcgaagaaaacaaaagat
tgaAAAGACAGTCAAAGGTATTGGACAGATTTGGTCAGATTTGGATTGGT
GTGGTCACAAATTGATAGGTGAATTGGTGGATTTTCATGTAGTTCACCTT
AACGATGGTGGattaaacaaaaagacaatttgaattttgaaccATTTTCT
GTTAATGAGTTACAAAATAGTTTTAAGATATTCCTTAAcgtatttttaaa Run BLAST on NCBI protein sequence of TCONS_00023754-protein >TCONS_00023754-protein ID=TCONS_00023754-protein|Name=TCONS_00023754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
SSGMIQTEESNEGQSAPTLMETDVETSLQAPQAYMSQLQSALENQQQPLS
DSNNTEPYMNHDFFASQQQQQQQQTIEYNNILQDINQMYALMSQQPGFQY
QDFANAYYNQFFYNTCQTQMQMLPESGANLSSQYTPFQTIATPIIHQEID
QGRVADLETMTTNVNELLGTVDMTNDLFSNTLLKNCPEKRKGRSKKEDYS
EERLEEVAAACLPDAFDLWKEKYRTLVIEEYPNASRKEVDDRLTEIWCRL
PDMHRRRYFVKAEKLARRYNSTAAFSYMNRFKNKHPAHRYNEPNVPNDSN
RVHCPTPIRTTPKGTPDKTTEHENDSQKSSDSDENSNDSLTNSNDFDYKN
ALKETQTYNSPVKXITKTR Run BLAST on NCBI transcript from alignment at sc0000461:179219..182023+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023754 ID=TCONS_00023754|Name=TCONS_00023754|organism=Clytia hemisphaerica|type=transcript|length=2805bp|location=Sequence derived from alignment at sc0000461:179219..182023+ (Clytia hemisphaerica)
tcttcggGAATGATCCAAACTGAAGAATCAAATGAAGGTATCAATTATTA
ATTATTCTTTGACATTTATAGACAAAATGCAATGGCTCTAAAACTTCTAC
CGGGTGTGCCAGAAAAAATCCCctctttgaaatgaattttatcgAGTTCT
ATAAATTGTTAAAGAATCAatccttttgcattggaaagaggaaggataaa
cttaagGGGTCGTTTGCCAacttacttttcaaaaaagataaaagaagaat
ttctttatgatgatttaATCAGATTTAATTAcgccttttttaactttttt
gaaaaataatgttttagcatttaggccATAGCTTTTTATCTAGTTGACCG
AATTTAAAACTGAACCCCAAAGTTTATCCTTTCTCTTTTCAATGCAAATG
AACTGATTCTTTAACAGTTCATAAAACGTGAAAAGATTCACTTCAAATAA
GGGgatttttttctgggacacccggtagaaTTAGAGCAACGTGCGCTATG
TCTCGGAGATCGAAAAGCATCTAAAATAGTGACACCGTGACTGGCATTGA
CAGTTGTTCTGACAATTTTAATAATGTTCAGTTCAATGTCATTAACCAGT
TTATGTACCCTGAACCATAAACTTCGAAGGGCGTGGTTGCTTGTGAAGCA
TGCGAATTCAAAAAACACACGTAATTACACTCAGCGGTACTTATAAGCGG
CCTTTGATAGCAAACTGATTTACCATTCAGCAAATCAAGATCAAAGAAAA
GCTAACTGTTGGCGGGTCGTTCAAAGATTTAAGTTAAAATCGTTTCTTTT
CTTTCAAGGTCAAAGCGCTCCAACCCTCATGGAAACAGACGTTGAAACCA
GCTTACAGGCTCCTCAAGCTTACATGTCACAGTTACAGTCAGCACTTGAA
AACCAACAGCAACCATTGTCGGACTCCAACAATACAGAACCATACATGAA
TCATGACTTCTTTGCAAgccagcaacaacaacaacaacaacaaacaatcG
AATACAATAACATCTTACAAGACATCAATCAAATGTACGCACTTATGTCA
CAACAACCTGGATTCCAATACCAAGACTTCGCCAACGCCTATTACAACCA
ATTCTTTTACAACACATGTCAAACACAAATGCAAATGCTCCCCGAATCGG
GCGCTAATCTTAGTAGTCAATACACGCCATTCCAAACCATAGCAACGCCT
ATAATTCACCAAGAAATAGATCAAGGACGAGTCGCAGACCTGGAAACCAT
GACAACAAACGTGAATGAGCTGTTGGGTACCGTTGATATGACGAACGATT
TGTTTTCGAATACGCTGTTGAAGAATTGTCCTGAGAAACGAAAAGGAAGA
TCAAAGAAAGAAGATTATAGTGAGGAGAGATTGGAAGAAGTAGCGGCTGC
TTGTTTACCTGATGCTTTTGacctttggaaagaaaaatacAGGTATGTCT
TCTTGATATTGGTGGTTAATACCTGGCGGTAAATCTAAAAGTCTCAANTA
GGTATATCTTCTTAATATCTTATTTGTGGTTAACACATGGCGGTAAATCT
AAAAGTCTCAACCATGTGTCCATGCGGAGGAATAATTTTGTTGGATTTTA
AGATCTTgacttttcaaaagaattcGTCACTGCGcctatttctaattttc
tagTTTTAATTATTATTCGATCTTATTAACTAATTTACGTCTGAAGGAAC
TTAATTACCGGACTTTCTGTTTACAGAACTCTGGTGATCGAAGAGTATCC
GAATGCGTCACGTAAAGAAGTAGACGATCGGTTGACGGAGATTTGGTGCC
GACTTCCCGACATGCACCGACGTAGATATTTCGTGAAAGCCGAGAAACTT
GCGCGACGTTATAATTCAACTGCAGCCTTTAGTTATATGAATCGATTCAA
AAACAAACACCCGGCGCATAGATACAATGAGCCAAACGTACCGAACGATT
CGAACCGCGTGCACTGCCCGACACCTATTCGTACGACACCGAAGGGCACT
CCCGATAAAACCACCGAGCACGAGAACGATAGCCAAAAATCGTCAGATAG
TGACGAGAATAGTAACGACTCTTTAACGAATTCGAACGACTTTGATTACA
AAAACGCATTAAAAGAAACGCAAACGTACAATTCACCCGTCAAGNTGATT
ACAAAAACGCGTTAAAAGAAACGCAAACGTACAATTCACCCGTCAAGAAA
GCATTAACAAAGAAACTAAACCAACGCCAAAAACAACAAGAAGAAATTCA
ATCTGGTTCAACcacgaaaacaattaaaaactcGGGTGGTGGATTGAATT
TACCAGATGAAAGCATATTCGCAACAGGTGTTCTAATGGACATTATGATG
ACAGATGGAGATTCTTCACAACAAATCAAAGATGATGAATCAACACCACA
GTTGAAACCATCTTCTTGGTCACCGACTGAAATGATGTCCGAACTGACAA
CACTGGATATCAGCGCCTTGGATGATTATCTGACCGGCACCGATACATCA
TTTATTGATGAGTCATCATCGAACGCATCCGGTAAGAAGAAACGTAGACC
ATACAAACGTAAAAttggaaaagagaaaaaaacaaaagcgaagaaaacaa
aagattgaAAAGACAGTCAAAGGTATTGGACAGATTTGGTCAGATTTGGA
TTGGTGTGGTCACAAATTGATAGGTGAATTGGTGGATTTTCATGTAGTTC
ACCTTAACGATGGTGGattaaacaaaaagacaatttgaattttgaaccAT
TTTCTGTTAATGAGTTACAAAATAGTTTTAAGATATTCCTTAAcgtattt
ttaaa Coding sequence (CDS) from alignment at sc0000461:179219..182023+ >TCONS_00023754 ID=TCONS_00023754|Name=TCONS_00023754|organism=Clytia hemisphaerica|type=CDS|length=3330bp|location=Sequence derived from alignment at sc0000461:179219..182023+ (Clytia hemisphaerica)
tcttcggGAATGATCCAAACTGAAGAATCAAATGAAGGTCAAAGCGCTCC
AACCCTCATGGAAACAGACGTTGAAACCAGCTTACAGGCTCCTCAAGCTT
ACATGTCACAGTTACAGTCAGCACTTGAAAACCAACAGCAACCATTGTCG
GACTCCAACAATACAGAACCATACATGAATCATGACTTCTTTGCAAgcca
gcaacaacaacaacaacaacaaacaatcGAATACAATAACATCTTACAAG
ACATCAATCAAATGTACGCACTTATGTCACAACAACCTGGATTCCAATAC
CAAGACTTCGCCAACGCCTATTACAACCAATTCTTTTACAACACATGTCA
AACACAAATGCAAATGCTCCCCGAATCGGGCGCTAATCTTAGTAGTCAAT
ACACGCCATTCCAAACCATAGCAACGCCTATAATTCACCAAGAAATAGAT
CAAGGACGAGTCGCAGACCTGGAAACCATGACAACAAACGTGAATGAGCT
GTTGGGTACCGTTGATATGACGAACGATTTGTTTTCGAATACGCTGTTGA
AGAATTGTCCTGAGAAACGAAAAGGAAGATCAAAGAAAGAAGATTATAGT
GAGGAGAGATTGGAAGAAGTAGCGGCTGCTTGTTTACCTGATGCTTTTGa
cctttggaaagaaaaatacAGAACTCTGGTGATCGAAGAGTATCCGAATG
CGTCACGTAAAGAAGTAGACGATCGGTTGACGGAGATTTGGTGCCGACTT
CCCGACATGCACCGACGTAGATATTTCGTGAAAGCCGAGAAACTTGCGCG
ACGTTATAATTCAACTGCAGCCTTTAGTTATATGAATCGATTCAAAAACA
AACACCCGGCGCATAGATACAATGAGCCAAACGTACCGAACGATTCGAAC
CGCGTGCACTGCCCGACACCTATTCGTACGACACCGAAGGGCACTCCCGA
TAAAACCACCGAGCACGAGAACGATAGCCAAAAATCGTCAGATAGTGACG
AGAATAGTAACGACTCTTTAACGAATTCGAACGACTTTGATTACAAAAAC
GCATTAAAAGAAACGCAAACGTACAATTCACCCGTCAAGNTGATTACAAA
AACGCGTTAAtcttcggGAATGATCCAAACTGAAGAATCAAATGAAGGTC
AAAGCGCTCCAACCCTCATGGAAACAGACGTTGAAACCAGCTTACAGGCT
CCTCAAGCTTACATGTCACAGTTACAGTCAGCACTTGAAAACCAACAGCA
ACCATTGTCGGACTCCAACAATACAGAACCATACATGAATCATGACTTCT
TTGCAAgccagcaacaacaacaacaacaacaaacaatcGAATACAATAAC
ATCTTACAAGACATCAATCAAATGTACGCACTTATGTCACAACAACCTGG
ATTCCAATACCAAGACTTCGCCAACGCCTATTACAACCAATTCTTTTACA
ACACATGTCAAACACAAATGCAAATGCTCCCCGAATCGGGCGCTAATCTT
AGTAGTCAATACACGCCATTCCAAACCATAGCAACGCCTATAATTCACCA
AGAAATAGATCAAGGACGAGTCGCAGACCTGGAAACCATGACAACAAACG
TGAATGAGCTGTTGGGTACCGTTGATATGACGAACGATTTGTTTTCGAAT
ACGCTGTTGAAGAATTGTCCTGAGAAACGAAAAGGAAGATCAAAGAAAGA
AGATTATAGTGAGGAGAGATTGGAAGAAGTAGCGGCTGCTTGTTTACCTG
ATGCTTTTGacctttggaaagaaaaatacAGAACTCTGGTGATCGAAGAG
TATCCGAATGCGTCACGTAAAGAAGTAGACGATCGGTTGACGGAGATTTG
GTGCCGACTTCCCGACATGCACCGACGTAGATATTTCGTGAAAGCCGAGA
AACTTGCGCGACGTTATAATTCAACTGCAGCCTTTAGTTATATGAATCGA
TTCAAAAACAAACACCCGGCGCATAGATACAATGAGCCAAACGTACCGAA
CGATTCGAACCGCGTGCACTGCCCGACACCTATTCGTACGACACCGAAGG
GCACTCCCGATAAAACCACCGAGCACGAGAACGATAGCCAAAAATCGTCA
GATAGTGACGAGAATAGTAACGACTCTTTAACGAATTCGAACGACTTTGA
TTACAAAAACGCATTAAAAGAAACGCAAACGTACAATTCACCCGTCAAGN
TGATTACAAAAACGCGTTAAtcttcggGAATGATCCAAACTGAAGAATCA
AATGAAGGTCAAAGCGCTCCAACCCTCATGGAAACAGACGTTGAAACCAG
CTTACAGGCTCCTCAAGCTTACATGTCACAGTTACAGTCAGCACTTGAAA
ACCAACAGCAACCATTGTCGGACTCCAACAATACAGAACCATACATGAAT
CATGACTTCTTTGCAAgccagcaacaacaacaacaacaacaaacaatcGA
ATACAATAACATCTTACAAGACATCAATCAAATGTACGCACTTATGTCAC
AACAACCTGGATTCCAATACCAAGACTTCGCCAACGCCTATTACAACCAA
TTCTTTTACAACACATGTCAAACACAAATGCAAATGCTCCCCGAATCGGG
CGCTAATCTTAGTAGTCAATACACGCCATTCCAAACCATAGCAACGCCTA
TAATTCACCAAGAAATAGATCAAGGACGAGTCGCAGACCTGGAAACCATG
ACAACAAACGTGAATGAGCTGTTGGGTACCGTTGATATGACGAACGATTT
GTTTTCGAATACGCTGTTGAAGAATTGTCCTGAGAAACGAAAAGGAAGAT
CAAAGAAAGAAGATTATAGTGAGGAGAGATTGGAAGAAGTAGCGGCTGCT
TGTTTACCTGATGCTTTTGacctttggaaagaaaaatacAGAACTCTGGT
GATCGAAGAGTATCCGAATGCGTCACGTAAAGAAGTAGACGATCGGTTGA
CGGAGATTTGGTGCCGACTTCCCGACATGCACCGACGTAGATATTTCGTG
AAAGCCGAGAAACTTGCGCGACGTTATAATTCAACTGCAGCCTTTAGTTA
TATGAATCGATTCAAAAACAAACACCCGGCGCATAGATACAATGAGCCAA
ACGTACCGAACGATTCGAACCGCGTGCACTGCCCGACACCTATTCGTACG
ACACCGAAGGGCACTCCCGATAAAACCACCGAGCACGAGAACGATAGCCA
AAAATCGTCAGATAGTGACGAGAATAGTAACGACTCTTTAACGAATTCGA
ACGACTTTGATTACAAAAACGCATTAAAAGAAACGCAAACGTACAATTCA
CCCGTCAAGNTGATTACAAAAACGCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023754-exon-sc0000461-1491911889:179219..179255 | TCONS_00023754-exon-sc0000461-1491911889:179219..179255 | Clytia hemisphaerica | exon |
| TCONS_00023754-exon-sc0000461-1510915933:179219..179255 | TCONS_00023754-exon-sc0000461-1510915933:179219..179255 | Clytia hemisphaerica | exon |
| TCONS_00023754-exon-sc0000461-1575043694:179219..179255 | TCONS_00023754-exon-sc0000461-1575043694:179219..179255 | Clytia hemisphaerica | exon |
| TCONS_00023754-exon-sc0000461-1491911889:180027..180660 | TCONS_00023754-exon-sc0000461-1491911889:180027..180660 | Clytia hemisphaerica | exon |
| TCONS_00023754-exon-sc0000461-1510915933:180027..180660 | TCONS_00023754-exon-sc0000461-1510915933:180027..180660 | Clytia hemisphaerica | exon |
| TCONS_00023754-exon-sc0000461-1575043694:180027..180660 | TCONS_00023754-exon-sc0000461-1575043694:180027..180660 | Clytia hemisphaerica | exon |
| TCONS_00023754-exon-sc0000461-1491911889:180945..182023 | TCONS_00023754-exon-sc0000461-1491911889:180945..182023 | Clytia hemisphaerica | exon |
| TCONS_00023754-exon-sc0000461-1510915933:180945..182023 | TCONS_00023754-exon-sc0000461-1510915933:180945..182023 | Clytia hemisphaerica | exon |
| TCONS_00023754-exon-sc0000461-1575043694:180945..182023 | TCONS_00023754-exon-sc0000461-1575043694:180945..182023 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000461 | supercontig | sc0000461:179219..182023 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR009071 | HMG_box_dom |
Blast
The following BLAST results are available for this feature:
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