TCONS_00023777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023777
Unique NameTCONS_00023777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023777 ID=TCONS_00023777|Name=TCONS_00023777|organism=Clytia hemisphaerica|type=transcript|length=555bp
ggtatgtgccacccttaagagtaccttttttggataaagtccgggtaagg
gtcggaaaattcacaaaattttcctttgttttctcctttttagtctcgtt
aagggtccgagggtcgaatgTCGGGCAGCACCCCCCTCGTCAGATCGCAA
CCCTAGGATCCTCCCCCCAGGGGGAAaacccgttgcaaatgcacaccCCG
TGCAAATGCCCAAGGATTTGTCTGACTGCCAAATATAGTCCATCTAAAGT
CGATGCAAATTTATGCCAAATTCATTCCATAAGTCATTTATGACATTAAG
TTTTTCGAATAAAGTCGCCTGGTATTCAacttttatagcttaaaaaGTCA
CTCAAGCATGAAATGTAATGTGCCGTTTTTAATTCTCCTTTGGGAAAACG
AAAGCTGTTATGCCAGTTACGATTGATTCGTTTTTTTTATACTACTTAAT
TGACAAGGAATTTACGATGTTCTCTACCGTTTTGACTTTCTCGACGTCAC
AACTATGTGTAAGTACTTTCGTTTACATAATGAAAACACACGGGTTTTAC
CAAGC
Run BLAST on NCBI

transcript from alignment at sc0000461:71075..71629

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023777 ID=TCONS_00023777|Name=TCONS_00023777|organism=Clytia hemisphaerica|type=transcript|length=555bp|location=Sequence derived from alignment at sc0000461:71075..71629 (Clytia hemisphaerica)
GCTTGGTAAAACCCGTGTGTTTTCATTATGTAAACGAAAGTACTTACACA
TAGTTGTGACGTCGAGAAAGTCAAAACGGTAGAGAACATCGTAAATTCCT
TGTCAATTAAGTAGTATAAAAAAAACGAATCAATCGTAACTGGCATAACA
GCTTTCGTTTTCCCAAAGGAGAATTAAAAACGGCACATTACATTTCATGC
TTGAGTGACtttttaagctataaaagtTGAATACCAGGCGACTTTATTCG
AAAAACTTAATGTCATAAATGACTTATGGAATGAATTTGGCATAAATTTG
CATCGACTTTAGATGGACTATATTTGGCAGTCAGACAAATCCTTGGGCAT
TTGCACGGggtgtgcatttgcaacgggttTTCCCCCTGGGGGGAGGATCC
TAGGGTTGCGATCTGACGAGGGGGGTGCTGCCCGAcattcgaccctcgga
cccttaacgagactaaaaaggagaaaacaaaggaaaattttgtgaatttt
ccgacccttacccggactttatccaaaaaaggtactcttaagggtggcac
atacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013362XLOC_013362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023777-exon-sc0000461-1491911889:71075..71629TCONS_00023777-exon-sc0000461-1491911889:71075..71629Clytia hemisphaericaexon
TCONS_00023777-exon-sc0000461-1510915933:71075..71629TCONS_00023777-exon-sc0000461-1510915933:71075..71629Clytia hemisphaericaexon
TCONS_00023777-exon-sc0000461-1575043694:71075..71629TCONS_00023777-exon-sc0000461-1575043694:71075..71629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000461supercontigsc0000461:71075..71629 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.727294	0.135309	2.299	1.39131	0.848677	0.787765	0.3994	0.79227	0.625425	0.749193	1.11292	1.21164	0.519812	0.718071	0.353582	0.442948	0.179719	0.169131	0.108999	0.342179	0.476741	1.34697	0.243296	0	0.787797	1.20884	0.566492	0	0.638272	0.224645
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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