TCONS_00023779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023779
Unique NameTCONS_00023779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023779 ID=TCONS_00023779|Name=TCONS_00023779|organism=Clytia hemisphaerica|type=transcript|length=789bp
gtgtttttatatgaagaaagaggtgGGCTAATTTTccttttgctttttat
cgccctttgaatgctgttgtgtgtgtgtgtgtgtgtgtgaatACTGGGTC
ATTGCTGAACCCCGAAGAGAGTCTTCTTCGCCAAGGCAATCGACTTCTCA
GGGCACTTTGTGAGAAGTCCCAGGCCCACCTCAagttctttttcatcaaa
aatttcatgttttgctTCTGATGCATCTGGGCAGCGGAGGAACCAGTGTT
CGAGGTTGTGTATTTCTCCGCTGTCACATTTGGTGTATGTAGGGTCATCT
CATCATATGTTGGTAGCTGCGGAAGACCTTGTGTTTTCCGCTTCTCAGTT
GTGCCAGTAGAACTTGATCCGCTCTGGTTTTAACCTCTTGTTCACGTTGT
TTCGAGAAATGACTGTAGACCTTCTTTAATTGTTGGTGGTTCGTCGGGTG
TTTGATTCTGCTTCTTATCATTGTGCAGGCACTTCTGTACGATATTGGTC
TGGGGTCTGCCTCTAATTTGGTCGCTTCTTTGGCTGCTTGGTCAGCGAGT
TCGTTTCCTGGGACGTCTGAGTGGCCCGGGATCCATTGGATGATCGTTCT
TCCTGGCCTGTTGTGTAGCGCTTCCCTTATTGTTGCTGTTCGACGTTATA
GCTTAATAAGGCTAGGCATAGTGACTGACTGTCCGTGCAGACCATGATGC
TGATTTCTGGGTCGCAGTTTAAGGAGATCCAATTTGCGGTTGTTTGCATT
GCGTCCAGCTCTTCTTCGTACGAGCAGGTAAAATCTGAT
Run BLAST on NCBI

transcript from alignment at sc0000461:93333..94121

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023779 ID=TCONS_00023779|Name=TCONS_00023779|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at sc0000461:93333..94121 (Clytia hemisphaerica)
ATCAGATTTTACCTGCTCGTACGAAGAAGAGCTGGACGCAATGCAAACAA
CCGCAAATTGGATCTCCTTAAACTGCGACCCAGAAATCAGCATCATGGTC
TGCACGGACAGTCAGTCACTATGCCTAGCCTTATTAAGCTATAACGTCGA
ACAGCAACAATAAGGGAAGCGCTACACAACAGGCCAGGAAGAACGATCAT
CCAATGGATCCCGGGCCACTCAGACGTCCCAGGAAACGAACTCGCTGACC
AAGCAGCCAAAGAAGCGACCAAATTAGAGGCAGACCCCAGACCAATATCG
TACAGAAGTGCCTGCACAATGATAAGAAGCAGAATCAAACACCCGACGAA
CCACCAACAATTAAAGAAGGTCTACAGTCATTTCTCGAAACAACGTGAAC
AAGAGGTTAAAACCAGAGCGGATCAAGTTCTACTGGCACAACTGAGAAGC
GGAAAACACAAGGTCTTCCGCAGCTACCAACATATGATGAGATGACCCTA
CATACACCAAATGTGACAGCGGAGAAATACACAACCTCGAACACTGGTTC
CTCCGCTGCCCAGATGCATCAGAagcaaaacatgaaatttttgatgaaaa
agaactTGAGGTGGGCCTGGGACTTCTCACAAAGTGCCCTGAGAAGTCGA
TTGCCTTGGCGAAGAAGACTCTCTTCGGGGTTCAGCAATGACCCAGTatt
cacacacacacacacacacacaacagcattcaaagggcgataaaaagcaa
aaggAAAATTAGCCcacctctttcttcatataaaaacac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013364XLOC_013364Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023779-exon-sc0000461-1491911889:93333..94121TCONS_00023779-exon-sc0000461-1491911889:93333..94121Clytia hemisphaericaexon
TCONS_00023779-exon-sc0000461-1510915933:93333..94121TCONS_00023779-exon-sc0000461-1510915933:93333..94121Clytia hemisphaericaexon
TCONS_00023779-exon-sc0000461-1575043694:93333..94121TCONS_00023779-exon-sc0000461-1575043694:93333..94121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000461supercontigsc0000461:93333..94121 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.516813	0.137062	0.396308	0.40655	0.0824892	0.0800952	0.823148	0.906188	0.507367	0.391302	0.398087	0.222201	0.894988	0.126744	0.59047	0.625664	0.413271	0.329458	0	0.0680424	0.177424	0.343741	0.280538	0.25505	0.0656739	0.293062	0.167748	0	0.081998	0.0691715
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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