TCONS_00023783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023783
Unique NameTCONS_00023783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1865

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023783 ID=TCONS_00023783|Name=TCONS_00023783|organism=Clytia hemisphaerica|type=transcript|length=1865bp
CCTAAATCAACTGAATCCTAAATTTAACGATATCCTTTCTTTATTAATTG
ATAAAGAACATTTAATTGTGCTAAAATCATCTCCATCTGGTCTTTAGTAT
ACACAATTTTCTGATCAAGTTTCTGTATAGCATTCTCGTGTATTAGACCG
TCTTTGGAGACTAATTCATTCAATTTTGTATGGATACTTTTGCCTCTGGC
TAAATGGGGATCATCCAAATATTTAGCGTGAAGGGGCACAAACCATGAGG
GCCCATATTGGGCATACATGCGATTCTTAGCATCTTTATGACAAGTTAGC
CTTGCTGAGTCCATATAACAATTACATGTCGAATTATGGGTTGGTCTTGA
TTGCCCAGTTTTAGTCATTTCGTCAACCATCCATTCATTAAAAACTAAAT
GAATTTCAGCACATCCTTTTACACGCCAGTGTATTTCAGCTCTGAGGCTT
TTTAATGACCCATCTACATGTGGAGAGGGTTTTAATACTTTTTGTAgcat
ttgataaagtttttcttgtggaatatcaacaaaaatatcaacGTCTCCAT
CACTGGATAAATAAGAACTCCCTCTTACGACACCGAGCTCACTTCCTGAC
CGTGGAAAATAAATGGCTCCCATCTTATCCAACTCTCTCCATAACTTGTT
ATGAGCCTTTGAACATTTTGTCCACGGTATTAAGTCTTGTCCAAAAGTAC
AGTTGGGTCTGATAAAACCTTTACCTGGTCTTGTTGGCTCTTTCCATTTA
AGCTTGCGCGGTGGGATGTCTTTGTAATCGGCCTGAGGTGTCAAATGCCA
CCAtctgaataaaaagataaagaaagatTTGAGAGGGAGTACTCTTGTAG
TATTACTTAGACTACCGTCTTCTATTTTTgggtagatttaaaaaaaaatt
ctctattGATTACTTACAGGAGGGGTCAAAATCTCCGTCAAAGCTTTTTT
CAAGGGAAAGAGCCAAAAACTTTCAAAGGAATTttgtcatttcatttttt
tttaaatcggtCCCTCTAATTTATAGTCCCCCTTACCGTTTATTCCATGG
CTCCTGGCTAAATGGCCCTTTGAAACGTTTTTGCTACAAAGTTTTGGACT
AGAACTGCTGCACATTTTTGTCGAGACTCGGCTGTTTTCATTGTTCAGCA
CGACATGTGCTAgtctaaattgttcttaaactGTTGCTAGGGAAAACCTA
ATTACACTAAGTTTACTATTTGAATCGTAAAATTTAgcttttcttgtttt
tgtaAACCTTGTTGCTCTAATAAGATTAATCTACTGGAAAAAATGCGTAG
GGTTGCATACATTCAAGTTGTCAAGTTGACATACATACCTTGTACAGTGT
TCAgttgttcttttattttttgttggctttaaatcaactttttgtaaaGT
TTCCAAGAACATTGGGAACCATGACTCATTCACTAATTTAGATGCATAAT
TTGGAAAAGGGCAATCACCTGTCCAACTCTTTATATATTGAGTTATATTC
GTTTTTCGATGAATTTTCAATCCGGTGTTTTCCTTGTTATTCTCTTTCgt
gattttgatttcaatttttgtctGGTCAACCAATGTTCGCAGTGCAGGTA
GTATAGTTATGGGTCGAGGGTGATTGACTACTGGGTATACAAGTAACATC
GATAATGATACAAAAACCATTAATATTAAGACTGATTGCCATGAATGCAC
CATGTTTCGAATTGAGAATCAATTTTTTCTTCCAGTTCCCTAGTAAGGAA
AAtgtgcaaaattattttttaaaaggtTTATTCCAAATTAGAAAGACAGT
AGAAGCCACcgataaaaaataaacaaattttttttttccagctgggaaag
atttttaattttcac
Run BLAST on NCBI

protein sequence of TCONS_00023783-protein

>TCONS_00023783-protein ID=TCONS_00023783-protein|Name=TCONS_00023783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MGAIYFPRSGSELGVVRGSSYLSSDGDVDIFVDIPQEKLYQMLQKVLKPS
PHVDGSLKSLRAEIHWRVKGCAEIHLVFNEWMVDEMTKTGQSRPTHNSTC
NCYMDSARLTCHKDAKNRMYAQYGPSWFVPLHAKYLDDPHLARGKSIHTK
LNELVSKDGLIHENAIQKLDQKIVYTKDQMEMILAQLNVLYQLIKKGYR
Run BLAST on NCBI

transcript from alignment at sc0000462:7582..9446+

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023783 ID=TCONS_00023783|Name=TCONS_00023783|organism=Clytia hemisphaerica|type=transcript|length=1865bp|location=Sequence derived from alignment at sc0000462:7582..9446+ (Clytia hemisphaerica)
CCTAAATCAACTGAATCCTAAATTTAACGATATCCTTTCTTTATTAATTG
ATAAAGAACATTTAATTGTGCTAAAATCATCTCCATCTGGTCTTTAGTAT
ACACAATTTTCTGATCAAGTTTCTGTATAGCATTCTCGTGTATTAGACCG
TCTTTGGAGACTAATTCATTCAATTTTGTATGGATACTTTTGCCTCTGGC
TAAATGGGGATCATCCAAATATTTAGCGTGAAGGGGCACAAACCATGAGG
GCCCATATTGGGCATACATGCGATTCTTAGCATCTTTATGACAAGTTAGC
CTTGCTGAGTCCATATAACAATTACATGTCGAATTATGGGTTGGTCTTGA
TTGCCCAGTTTTAGTCATTTCGTCAACCATCCATTCATTAAAAACTAAAT
GAATTTCAGCACATCCTTTTACACGCCAGTGTATTTCAGCTCTGAGGCTT
TTTAATGACCCATCTACATGTGGAGAGGGTTTTAATACTTTTTGTAgcat
ttgataaagtttttcttgtggaatatcaacaaaaatatcaacGTCTCCAT
CACTGGATAAATAAGAACTCCCTCTTACGACACCGAGCTCACTTCCTGAC
CGTGGAAAATAAATGGCTCCCATCTTATCCAACTCTCTCCATAACTTGTT
ATGAGCCTTTGAACATTTTGTCCACGGTATTAAGTCTTGTCCAAAAGTAC
AGTTGGGTCTGATAAAACCTTTACCTGGTCTTGTTGGCTCTTTCCATTTA
AGCTTGCGCGGTGGGATGTCTTTGTAATCGGCCTGAGGTGTCAAATGCCA
CCAtctgaataaaaagataaagaaagatTTGAGAGGGAGTACTCTTGTAG
TATTACTTAGACTACCGTCTTCTATTTTTgggtagatttaaaaaaaaatt
ctctattGATTACTTACAGGAGGGGTCAAAATCTCCGTCAAAGCTTTTTT
CAAGGGAAAGAGCCAAAAACTTTCAAAGGAATTttgtcatttcatttttt
tttaaatcggtCCCTCTAATTTATAGTCCCCCTTACCGTTTATTCCATGG
CTCCTGGCTAAATGGCCCTTTGAAACGTTTTTGCTACAAAGTTTTGGACT
AGAACTGCTGCACATTTTTGTCGAGACTCGGCTGTTTTCATTGTTCAGCA
CGACATGTGCTAgtctaaattgttcttaaactGTTGCTAGGGAAAACCTA
ATTACACTAAGTTTACTATTTGAATCGTAAAATTTAgcttttcttgtttt
tgtaAACCTTGTTGCTCTAATAAGATTAATCTACTGGAAAAAATGCGTAG
GGTTGCATACATTCAAGTTGTCAAGTTGACATACATACCTTGTACAGTGT
TCAgttgttcttttattttttgttggctttaaatcaactttttgtaaaGT
TTCCAAGAACATTGGGAACCATGACTCATTCACTAATTTAGATGCATAAT
TTGGAAAAGGGCAATCACCTGTCCAACTCTTTATATATTGAGTTATATTC
GTTTTTCGATGAATTTTCAATCCGGTGTTTTCCTTGTTATTCTCTTTCgt
gattttgatttcaatttttgtctGGTCAACCAATGTTCGCAGTGCAGGTA
GTATAGTTATGGGTCGAGGGTGATTGACTACTGGGTATACAAGTAACATC
GATAATGATACAAAAACCATTAATATTAAGACTGATTGCCATGAATGCAC
CATGTTTCGAATTGAGAATCAATTTTTTCTTCCAGTTCCCTAGTAAGGAA
AAtgtgcaaaattattttttaaaaggtTTATTCCAAATTAGAAAGACAGT
AGAAGCCACcgataaaaaataaacaaattttttttttccagctgggaaag
atttttaattttcac

Coding sequence (CDS) from alignment at sc0000462:7582..9446+

>TCONS_00023783 ID=TCONS_00023783|Name=TCONS_00023783|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000462:7582..9446+ (Clytia hemisphaerica)
TTAACGATATCCTTTCTTTATTAATTGATAAAGAACATTTAATTGTGCTA
AAATCATCTCCATCTGGTCTTTAGTATACACAATTTTCTGATCAAGTTTC
TGTATAGCATTCTCGTGTATTAGACCGTCTTTGGAGACTAATTCATTCAA
TTTTGTATGGATACTTTTGCCTCTGGCTAAATGGGGATCATCCAAATATT
TAGCGTGAAGGGGCACAAACCATGAGGGCCCATATTGGGCATACATGCGA
TTCTTAGCATCTTTATGACAAGTTAGCCTTGCTGAGTCCATATAACAATT
ACATGTCGAATTATGGGTTGGTCTTGATTGCCCAGTTTTAGTCATTTCGT
CAACCATCCATTCATTAAAAACTAAATGAATTTCAGCACATCCTTTTACA
CGCCAGTGTATTTCAGCTCTGAGGCTTTTTAATGACCCATCTACATGTGG
AGAGGGTTTTAATACTTTTTGTAgcatttgataaagtttttcttgtggaa
tatcaacaaaaatatcaacGTCTCCATCACTGGATAAATAAGAACTCCCT
CTTACGACACCGAGCTCACTTCCTGACCGTGGAAAATAAATGGCTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013368XLOC_013368Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023783-proteinTCONS_00023783-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023783-exon-sc0000462-1491911889:7582..9446TCONS_00023783-exon-sc0000462-1491911889:7582..9446Clytia hemisphaericaexon
TCONS_00023783-exon-sc0000462-1510915933:7582..9446TCONS_00023783-exon-sc0000462-1510915933:7582..9446Clytia hemisphaericaexon
TCONS_00023783-exon-sc0000462-1575043694:7582..9446TCONS_00023783-exon-sc0000462-1575043694:7582..9446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000462supercontigsc0000462:7582..9446 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0445932	0.0762233	0	0	0	0	0.155772	0	0.322476	0.0834857	0.187383	0	0	0	0.0534076	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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