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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023799 ID=TCONS_00023799|Name=TCONS_00023799|organism=Clytia hemisphaerica|type=transcript|length=2934bpRun BLAST on NCBI transcript from alignment at sc0000462:100182..109976+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023799 ID=TCONS_00023799|Name=TCONS_00023799|organism=Clytia hemisphaerica|type=transcript|length=9795bp|location=Sequence derived from alignment at sc0000462:100182..109976+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023799 vs. Swiss-Prot (Human)
Match: NMT2 (Glycylpeptide N-tetradecanoyltransferase 2 OS=Homo sapiens GN=NMT2 PE=1 SV=1) HSP 1 Score: 416.772 bits (1070), Expect = 3.474e-134 Identity = 194/295 (65.76%), Postives = 234/295 (79.32%), Query Frame = 2
Query: 401 FEFWDTQPVPKLDDKISLHTNESVEGDKQDIRQEPFSLPPGFEWDTLDLGDEDQLKELYTLLNENYVEDDDNMFRFDYSPTFLSWALRPPGFKNIWHCAVRVSTNKKLVGFISGVPAKIKVYEKHVNMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGIVLPKPVGTCRYWHRSINPKKLIEVKFSHLKRNMTMQRTIKLYRLPERLKDRELRPLTEADVPSGHKLLSNYLAKFDLAPMFDEEEFKHWFLPKDGVVTAY-IKMVSFHLTNLQFHYCFP*TFFQ 1282
++FWDTQPVPKLD+ I+ H ++E DK ++RQEP+SLP GF WDTLDL D + LKELYTLLNENYVEDDDNMFRFDYSP FL WALRPPG+ WHC VRVS+NKKLVGFIS +PA I++Y+ MVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAG+VLPKP+ TCRYWHRS+NP+KL+EVKFSHL RNMT+QRT+KLYRLP+ K LRP+ D+ S +L++ YL +F LAP+ DEEE HWFLP++ ++ + ++ + LT+ Y P T
Sbjct: 119 YQFWDTQPVPKLDEVITSHG--AIEPDKDNVRQEPYSLPQGFMWDTLDLSDAEVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDSVKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPIATCRYWHRSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKSVRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLPSTVMH 411 HSP 2 Score: 133.265 bits (334), Expect = 1.610e-32 Identity = 71/112 (63.39%), Postives = 90/112 (80.36%), Query Frame = 2
Query: 1481 FVLQDDSDNVTDMFSFYQLPSTIVDHPKYKTLKAAYSFYNVATTMTLKDLLSDALIVARNDGFDVFXXXXXXXXXXXXXXXKFGIGDGNLNYYIYNWKCPTIPPQKVGLVLQ 1816
FV++ + +TD SFY LPST++ HP +K+LKAAYSFYN+ T L DL+SDALI+A++ GFDVFNAL+LMEN+ LE+LKFGIGDGNL YY+YNW+CP +KVGLVLQ
Sbjct: 387 FVVESPNGKLTDFLSFYTLPSTVMHHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLYNWRCPGTDSEKVGLVLQ 498 The following BLAST results are available for this feature:
BLAST of TCONS_00023799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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