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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023806 ID=TCONS_00023806|Name=TCONS_00023806|organism=Clytia hemisphaerica|type=transcript|length=2062bp
TGAAAGAATTtcctttgaatttgttttagattaatttgttattttattac
aaaatttagTTACAAACAGAAGGTATTTTCAAGATGACGTCGATGGGAAT
GAGTTCCTTGTTCTCTTTTACTTCTCCTGCTGTCAAACGACTGCTTGGTT
GGAAACAAggagatgaagaagaaaaatgggCAGAAAAAGCTATAGATTCA
CTTGTCAAGAAGTTGAAGAAACGAAAAGGTGCCTTGGAAGAATTAGAGAA
AGCTTTGTCCAATCCAACTGGAGAATCTAATTGTGTCACAATTCCAAGAA
GTTTGGATGGTCGTTTACAAGTTTCTCATCGTAAAGGTCTTCCTCATGTT
ATATATTGTCGTGTATGGAGATGGCCAGACTTACAAAGCCACCACGAATT
AAAACCATTAGAATGTTGCGTTTATGCCTTTAGTTTGAACAAAAAAGAAG
TTTGTATCAATCCATACCATTACCGTCGTGTTGAAACACCAGttCTTCCA
CCAGTATTGGTTCCACGTCAAAGTGAATACCCACGAGGACCACTTCCATA
TCATATGCAACATGCTAATCACCAAGGAATGCCAAACAATGCAAACTTTC
CTTCATTTTCACATTCCAGATCACCTGGTGCTCCTGGTGAAGGACCACCT
GGTTATAATGGAGTCATGTCTGAGGATGGTGGTAGTCCACGGCCAGATCT
CTCAATGGATGCTGATAACATCCCACCAGATGTTACACCAATCACCTATA
ACGAACCAACAAACTGGTGCTCCATTGCATATTATGAATTGAATATCCGT
GTTGGAGAACCATTCCAAGCTTCTGGAACCAGTCTTGTAATTGATGGGTT
TACTGATCCTAATACAAGCTCTGATCGATTTTGCCTTGGTGGTATGTCAA
ATGTTAACCGTAATTCAACAATCGAAAATACACGTCGGCATATTAGTAAA
GGAGTTCATTTGTATTACGTTGGTGGGGAAGTTTTTGCCGAATGTCTCAG
TGATAGTGCTATATTTGTTCAAAGTCGAAATTGTAATTACCATCATGGAT
TCCATCCCACAACAGTTTGTAAAATCCCACCTCAATgtactttgaaaatt
ttcaataatcaaGAATTTGCTCAACTCTTGTCGCAAAGTGTTAACCATGG
CTATGAAGCTGTTTACGAACTTACTAAGCATTGTACTATTAGAATGAGTT
TTGTTAAAGGATGGGGTGCAGAATATCACCGTCAAGATGTAACAAGTACA
CCGTGCTGGGTTGAAATTCATCTCCATGGTCCTTTACAATGGCTTGATAA
AGTATTAACACAAATGGGTTCTCCTGCAGGAATCATTGGGTCGGTATCAT
AAAATCAAATCAGGACTAAAATCATGTTGTCATAAAACTGTTTTGTTACT
ACCATGTTTTAGTTGGTTTGTTTGATAGATATGGGTGGATCAGTCAGAGA
AATACAGGTTCAACATCCAAAATCGagaggaaaaatgaaattgctaTTTT
TACTACATACTAATAAATCAGAACATGACGTAACGTTAGAAACTATGGAA
CTGCTAATAAAATTAATAACACACAATTCTAAAGAATCCAGAGTAGTTAT
ATATACAGCAGAATCTATATTTTATAGCAGAAATTATAATTTTCCTAAAC
AAGCTTCTTGTGTTCACAGTTTTCGAATATATGAAGGTCAACGAAATTTA
TTACAATGTACCGTATGAAGAAGTTGTTAACATTGATCAATCTAAAGTAT
GTTACAACAAaggagattttttttaaaatactaatatttattatttttgt
ctCTCGTTAGTAACCtgtgtaaaatatattatttttgcGAATGTTTGGTC
CAATGCAAGGTAATCTTGTAAGGATTCTAGAGAGATGAAATCGTTTTTCC
CTTAATTTTTCTAAGCAGTAAAAATAAACCAATTCTCTTTTTGCACGATT
ACAATTATGTGTTTGGGCCTTTTACCTTCTTAATAATAATCCTCTATATT
CTAATATCTAATAttatacttttgttttcataatgttTTATATATACCTT
GCAATATTCTTT Run BLAST on NCBI transcript from alignment at sc0000462:159911..166685+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023806 ID=TCONS_00023806|Name=TCONS_00023806|organism=Clytia hemisphaerica|type=transcript|length=6775bp|location=Sequence derived from alignment at sc0000462:159911..166685+ (Clytia hemisphaerica)
TGAAAGAATTtcctttgaatttgttttagattaatttgttattttattac
aaaatttagTTACAAACAGAAGGTATTTTCAAGATGACGTCGATGGGAAT
GAGTTCCTTGTTCTCTTTTACTTCTCCTGCTGTCAAACGACTGCTTGGTT
GGAAACAAggagatgaagaagaaaaatgggCAGAAAAAGCTATAGATTCA
CTTGTCAAGAAGTTGAAGAAACGAAAAGGTGCCTTGGAAGAATTAGAGAA
AGCTTTGTCCAATCCAACTGGAGAATCTAATTGTGTCACAATTCCAAGAA
GTTTGGATGGTCGTTTACAAGTTTCTCATCGTAAAGGTCTTCCTCATGTT
ATATATTGTCGTGTATGGAGATGGCCAGACTTACAAAGCCACCACGAATT
AAAACCATTAGAATGTTGCGTTTATGCCTTTAGTTTGAACAAAAAAGAAG
TTTGTATCAATCCATACCATTACCGTCGTGTTGAAACACCAGGTAATTTA
TATCCTCCAAACTTGTCTGGCAAAAACCATGCATTACTTGGGGCCTGATC
CTGCTCTAGAGTCACAGAAGTAGGGGCAAATCTGAAGGGTTTTTTGGTCT
GGAAAAGCAAATTTTGTAAGTTGGTCAATTTTAATATCTTTCTAGTGAGC
TTTTACTAAGGTTTTTTCAAAGAAGTTTGAAAACTACTGTACCTTTAGGT
AATAATCCAAAACTTCCCTTGACAATCAGAAGCGCCGAGGTCACAAAAAT
TCAGATAGTGCTGTGGTACAGTCATTTGAAAATAAGATAAAGCCAAGCTG
GCATAATCTGTGAGTATCTTCCACACTGTTTTCTAGGCGGCCAACTTAAT
GCATTCTTCAGAATATTCTGTAATTTGTATTTTCTAaagaaatgttttca
tttgattGTTCAGGGAAATTTTGGGTGTTATAGGTAAGTACAACGGTAAT
ACAGTTAGGTGTATTTGCTGAttgataaaataataaatttatttcCACTT
CTCTGGATAACCTGATAGTAGATCAATTTCAACTTAATTTTTATCTTAAC
TGTAGTAAACAAAACATCCACAAGCAGTGCTTAAAATAAAAGTACTCATA
CAATCATTTGATATGATTGAAGTCCCAGAATGCTAAATAGCATAATAAAT
TGTGCATGTATTTATTAGCTTAGTAGGCAAATACATTGTATAGGGATATC
AATAAAGATGATTAGGAAAAGGTCCATTTCAATACAGACACTGATACCAC
TTGGACGTATATAGGACACTTTTCAAAGCTTCGTTAGTTGAACATGCACG
CCTTTGGGTTAATCCTGAGTTTTTTACCAAGATAATAAAATAACACAAAT
CATCTTCTACAGGGTGCGTCATAAAAAAGGTTTCTCTCTTTAATGTGAAT
TTTTTGCTGatcttaaaaatttgaaagataaggcaaaaataaaaaattgt
agtGTTCCTGGAAACTGGCCGGgtgaaaaaatggaaattttctGACCCgt
ccgcagactatgggtttatctttatggttcatcataaagaaaatcaagtt
gaccgttcaagctatcaaacgttgTTTGtttagatattcccgcttgtaaa
tcaagttttgttcgttacTAGTTGATGCATTAGTATTCAgagcttacttc
atactgtttgtatatacataaaagttatctttgaagtcctatttcaatga
tcttaagttattaaatatatttttaaaagaaattttccagccGGCCACAT
GAGATGACAGCTTTTTTCTTTCACCCgtattccggaaacactacatttgt
TTTGTTCTcctaaacttaaaattttgatgggctatttattaaatttggtt
cattagatcaaaatttatgctcaattaaacaaaaaagttactttcaaaaa
cgttaaaatcgACCTATATATCAAATTAATCAGAAGCATAATTGCATTGT
ACATTATTATTCTTTTTCTATggaaaggaaggttgaatttcaataaagaa
aattcatcagaaaatgccataaaattttgtaaattcatAAAACTAAATCA
GTGtatatccagtctagaaccaaaaaacTACGGACATTTTTGATAAagat
aaattaaaatgatttttatgaagattttaaacccttacgAGCCTTCAGAT
TCAAAGTTTATGTTTTTCATTACTAAAAAATGCTCTTATTCATGTATATA
AAGGCTATTGcaattgccaattttaaaataaaaatttgtaaccctccaaa
cgatttggagtacattaaaaacgagaccggtcttggtgcggtCGTGCTCG
TGCTGCTTTCCGACTGGTTAATTGTGCatgtaaaagttaaaaaaagcgGC
CAGAAGACCGTGCACAGTTCCGTATGGTCCGTCCGTgcggacgatggtgc
ggtccccgCCGACTAAAGCGGACAATGGTGCAGTCCCCGCCGACTAAAgc
ggacgatggtgcggtccccgccgtttgtttatatttctttcgGTTGCCgt
aagaatttcagcctcgagttcaacCAAGCAAAACAACAACTTGTTTCTGG
ACACACAAAAAGAACTTGCGTTGTTTGATGTTCGATGCTCACATGTGAAT
TCTTGAGTTcaactttgtttattttgccgAACGTTATAAAATCGGCAAAC
AGTCATGTAAAAAACCATTCCGCAAAATGTATGCTGTTTGTTATGATTTC
TCGCCTGCCGGCAAACGTTTCGAACGGCAAAATGTCCGCACCATGACCGC
ACTGAATACCGCACTTATTCAAATGGTGCTCTTTAGTGACCGATCGAGTG
CGTTTGAATGGATTTTTAGAAAcgatttttggatgatttctgGCCGATAC
AATGGTATCATTTTACCGCACGGTAAATCGTTTCGCCGCTTTTTTGCCGC
ACATTTTATCGATCCGtccgcaccaagaccggtctcatttttaatgtact
ccaaatcgcttggggggtcACATTTGATAGGTTGGTTTTCAACGTTTTca
agcactttctgaaagtaacttttttattcaattgagcataacttttgatc
taaatgaatcaaatttaataaatgaccgatcaaaatttttaagtttatct
ttcttctgtccaatgaaatagaaatagttttttaatttttttctatttcg
accaaaaagtaattttaaagagagaaacttttttgtgacaCACCTAGTAG
ATTATTTTCTATACAGAAAAAACATATATAAACTTTGAGCAAATTTGAAT
GGGAGGGCAGAAATGGTTTCACTGATATAACacagatttttaattttgaa
actcTTTAGACTATATCCAACACTTGGTGTAAATGCTGAAATCAATCAGC
ATATACAGCAAATATTCATAAGCTGATTAGATTAGGAGCTCTAGATTTTT
CTATCCATCTCTATCCAAGTACCCTCAGGTACATCTTGTTTAAtatgatc
tttattttgattcaTTGGATTTAGAAgttcaaaatttggtcaaaactcTT
GAAAAATGAATGTAATTAGATTGGTgcactaaaaaatattttttaccaaa
attggtttatttggaaaagtttttcttttatattcgaCAAAAATTTAAGT
TTGACAATATCTGACGATTTAGGTTTTTAATGGTTTTCATAACCCTCACT
AAGATTTTCTTAAGGTCCAAGAAAGCAAACCCCTCTGATTTATATAATTA
TGTCTTGAATATTAGGTCAAGTGTAATTAGCATGTGTTCGTTATATAGCA
ATTCACAGCCAATACAGAAGAACATGAtgtattaaaatcttttttgtttc
agttCTTCCACCAGTATTGGTTCCACGTCAAAGTGAATACCCACGAGGAC
CACTTCCATATCATATGCAACATGCTAATCACCAAGGAATGCCAAACAAT
GCAAACTTTCCTTCATTTTCACATTCCAGATCACCTGGTGCTCCTGGTGG
TAAGACTGGATTCCTTTTGTTTCAGAAAAACTGTGTctttttttagcctt
ttttttaattattttggcAAGGCCATAAACTTGGGGACTACTAAAAAGTG
GATTTTGGTGAACTTTGGTATACAAATCTTTAAGCTTGATGAATACAGTA
TCTGTTTAAGAAACATATTCTCAATGCTCCTGAGCAATTTCATAGNGAAT
ACAGTATCTGTTTAAGAAACATATTCTCAATGCTCCTGAGCAATTTTATA
ATatgattcttttttctttctttttttcagaagAAGGACCACCTGGTTAT
AATGGAGTCATGTCTGAGGATGGTGGTAGTCCACGGCCAGATCTCTCAAT
GGATGCTGATAACATCCCACCAGgtacaatttttgaatttttttacaatg
ttttgaaaatgcaTAATATGCCCATATAATACTTATTCATAGAGAAATCA
AAGTTTGagattttgtttgattgtttgaagcAAAAACAGCTTGATTTCAT
AGCTTGAAAACATacatatttttcaattaaatGTATGTAAATTAAACAAT
CAAAAATACATTATTTAACAACTGCTGAATATCAAAGTTTAATGTTTGAA
TATCAGTATTAATACCTCATCAGatcatttcatttcattcatcATTTGAA
GGCCAAATTCTACATCATGTTTATAGCTTTTCTTGCAGCTCTAGCCTTTG
CAgactttttgtctttttcaaagCTTCACATCTGCAAGATCTTCTATTCC
AATCGTTAAAACAATTGATTCCAAACAGtctaaaaaatgttgaaaattta
ctTTGACTGACTTTGGGAAGAAACTTTGCAGAAAGATACTTTTGCAAAAG
ttaattcaatgaaaaattatgaaaagcaACACGATAAAAAACACGACTAG
TTTACTGTAAAACTACCCTCGAAAAATTTGCTTGGATACGCTTTAGATTT
AAAGCTGTGAAATAGTAAGCCTGTTAGGACTGAGTTTCATAATGCTGATC
TTTCTCTTTTAATGGGTTATGAGCATCAGGCAGATTTTGAAGTCTTTGTT
ATGAACAGGCCAGGCATTGAACTGACAAACTTGTGCAATGTATGCACAGT
GTCTATCATaaataacgcttataagcattataagcatatgaaggctcagg
tTTGCAGAAATCctaagcatatatgtcagcctgaaatatttttcaagttg
taattttttatctgtttaaaaaggtttggtagggGTCAAGTAAAACATTC
CCCACAcggctacattccactgctcccaaaatctgaacaaacttttacaa
aatttctgaaatttcactaaaaacttggctcggggtgaatcataagcata
taattAATAAGCATAAGCTATGTCTAGATGCTTTGGGAACTttagcatac
acgagcctgaccaaggggcagacCCTTGCTACAAAACATgcatcaattat
atatgtgatAAGTATAAGTTTTAACACCGATTTTCTATACAGATGTTACA
CCAATCACCTATAACGAACCAACAAACTGGTGCTCCATTGCATATTATGA
ATTGAATATCCGTGTTGGAGAACCATTCCAAGCTTCTGGAACCAGTCTTG
TAATTGATGGGTTTACTGATCCTAATACAAGCTCTGATCGATTTTGCCTT
GGTGGTATGTCAAATGTTAACCGTAATTCAACAATCGAAAATACACGTCG
GCATATTAGTAAAGGAGTTCATTTGTATTACGTTGGTGGGGAAGTTTTTG
CCGAATGTCTCAGTGATAGTGCTATATTTGTTCAAAGTCGAAATTGTAAT
TACCATCATGGATTCCATCCCACAACAGTTTGTAAAATCCCACCTCAATg
tactttgaaaattttcaataatcaaGAATTTGCTCAACTCTTGTCGCAAA
GTGTTAACCATGGCTATGAAGCTGTTTACGAACTTACTAAGCATTGTACT
ATTAGAATGAGTTTTGTTAAAGGATGGGGTGCAGAATATCACCGTCAAGA
TGTAACAAGTACACCGTGCTGGGTTGAAATTCATCTCCATGGTCCTTTAC
AATGGCTTGATAAAGTATTAACACAAATGGGTTCTCCTGCAGGAATCATT
GGGTCGGTATCATAAAATCAAATCAGGACTAAAATCATGTTGTCATAAAA
CTGTTTTGTTACTACCATGTTTTAGTTGGTTTGTTTGATAGATATGGGTG
GATCAGTCAGAGAAATACAGGTTCAACATCCAAAATCGagaggaaaaatg
aaattgctaTTTTTACTACATACTAATAAATCAGAACATGACGTAACGTT
AGAAACTATGGAACTGCTAATAAAATTAATAACACACAATTCTAAAGAAT
CCAGAGTAGTTATATATACAGCAGAATCTATATTTTATAGCAGAAATTAT
AATTTTCCTAAACAAGCTTCTTGTGTTCACAGTTTTCGAATATATGAAGG
TCAACGAAATTTATTACAATGTACCGTATGAAGAAGTTGTTAACATTGAT
CAATCTAAAGTATGTTACAACAAaggagattttttttaaaatactaatat
ttattatttttgtctCTCGTTAGTAACCtgtgtaaaatatattatttttg
cGAATGTTTGGTCCAATGCAAGGTAATCTTGTAAGGATTCTAGAGAGATG
AAATCGTTTTTCCCTTAATTTTTCTAAGCAGTAAAAATAAACCAATTCTC
TTTTTGCACGATTACAATTATGTGTTTGGGCCTTTTACCTTCTTAATAAT
AATCCTCTATATTCTAATATCTAATAttatacttttgttttcataatgtt
TTATATATACCTTGCAATATTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023806-exon-sc0000462-1491911889:159911..160402 | TCONS_00023806-exon-sc0000462-1491911889:159911..160402 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1510915933:159911..160402 | TCONS_00023806-exon-sc0000462-1510915933:159911..160402 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1575043694:159911..160402 | TCONS_00023806-exon-sc0000462-1575043694:159911..160402 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1491911889:163713..163859 | TCONS_00023806-exon-sc0000462-1491911889:163713..163859 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1510915933:163713..163859 | TCONS_00023806-exon-sc0000462-1510915933:163713..163859 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1575043694:163713..163859 | TCONS_00023806-exon-sc0000462-1575043694:163713..163859 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1491911889:164144..164233 | TCONS_00023806-exon-sc0000462-1491911889:164144..164233 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1510915933:164144..164233 | TCONS_00023806-exon-sc0000462-1510915933:164144..164233 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1575043694:164144..164233 | TCONS_00023806-exon-sc0000462-1575043694:164144..164233 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1491911889:165353..166685 | TCONS_00023806-exon-sc0000462-1491911889:165353..166685 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1510915933:165353..166685 | TCONS_00023806-exon-sc0000462-1510915933:165353..166685 | Clytia hemisphaerica | exon |
| TCONS_00023806-exon-sc0000462-1575043694:165353..166685 | TCONS_00023806-exon-sc0000462-1575043694:165353..166685 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000462 | supercontig | sc0000462:159911..166685 + |
Blast
BLAST of TCONS_00023806 vs. Swiss-Prot (Human)
Match: SMAD1 (Mothers against decapentaplegic homolog 1 OS=Homo sapiens GN=SMAD1 PE=1 SV=1) HSP 1 Score: 592.423 bits (1526), Expect = 0.000e+0 Identity = 321/466 (68.88%), Postives = 355/466 (76.18%), Query Frame = 3
Query: 93 MGMSSLFSFTSPAVKRLLGWKQGDEEEKWAEKAIDSLVKKLKKRKGALEELEKALSNPTGESNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCVYAFSLNKKEVCINPYHYRRVETXXXXXXXXXRQSEY-PRGPLPYHMQH--ANHQGMPNNANFPS---------FSHSRS---PGAPGEG------------------------PPGY---NGVMSEDGGSPRPDLSMDADNIPP-----DVTPITYNEPTNWCSIAYYELNIRVGEPFQASGTSLVIDGFTDPNTSSDRFCLGGMSNVNRNSTIENTRRHISKGVHLYYVGGEVFAECLSDSAIFVQSRNCNYHHGFHPTTVCKIPPQCTLKIFNNQEFAQLLSQSVNHGYEAVYELTKHCTIRMSFVKGWGAEYHRQDVTSTPCWVEIHLHGPLQWLDKVLTQMGSPAGIIGSVS 1349
M ++SLFSFTSPAVKRLLGWKQGDEEEKWAEKA+D+LVKKLKK+KGA+EELEKALS P SNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECC + F +KEVCINPYHY+RVE+PVLPPVLVPR SEY P+ L ++ N MP NA FP F HS + P +PG PP Y M++DG P D +M A +P DV + Y EP +WCSI YYELN RVGE F AS TS+++DGFTDP+ + +RFCLG +SNVNRNSTIENTRRHI KGVHLYYVGGEV+AECLSDS+IFVQSRNCNYHHGFHPTTVCKIP C+LKIFNNQEFAQLL+QSVNHG+E VYELTK CTIRMSFVKGWGAEYHRQDVTSTPCW+EIHLHGPLQWLDKVLTQMGSP I SVS
Sbjct: 1 MNVTSLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIPRSLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRVESPVLPPVLVPRHSEYNPQHSLLAQFRNLGQNEPHMPLNATFPDSFQQPNSHPFPHSPNSSYPNSPGSSSSTYPHSPTSSDPGSPFQMPADTPPPAYLPPEDPMTQDGSQPM-DTNMMAPPLPSEINRGDVQAVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPSNNKNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPHNPISSVS 465
The following BLAST results are available for this feature:
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