TCONS_00023810 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023810
Unique Name	TCONS_00023810
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3192

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000462:224117..227370+
coding sequence from alignment at sc0000462:224117..227370+

transcript sequence

>TCONS_00023810 ID=TCONS_00023810|Name=TCONS_00023810|organism=Clytia hemisphaerica|type=transcript|length=3192bp
ATCAATTGGCTTCTATGGCCtattttgaagtattttaattttgatgcTGA
TTTACAAGCTTCTACaattattttccttttatttgcagactaaataaaaa
atgaaaaaatcagaaTAAACATAAAGCTATCATGGTTGGTGGAAAATTAG
GTGGTGCTAATTTGGgattattttcctttttggcATCATCTCACCCGACA
GACACTTGTGGACAAAATGGATTACCGGTCACGCCAAACTCTATCCGCAT
CTTGGGACggtttcaaaaattgaaacttcTGCAACATCCTCATTTGTGTC
AATATGTTGACATTGTACGTGGAAAACATGAACGTCTTGTAATAGTGTCA
GAATTCTACACAACCAATCTGAAAACTTTGATTAAAAAGAAGTTTCAATT
TCGTACTGTAGCTGAAATCCAAAAATTGGGTTATGAGATTTTATTAGCAC
TTGAATTCCTCTCTAATCAAGGTTATGTACACCGAAATCTGTcctctgaa
aatattttatttgatgAAGATGACCATGTGAAATTATCCCAATACGGTTT
ATATAATATGACAAATTTTACTGATGAGGTTGTGTTTACGGTTGGTGATA
CTCGTTACATGGCACCAGAAGTGATTGTGTCTGGCCTTGGATATAATCCA
TTATACGGGCCATCAGACAATGCAGTTGATATTTGGTCATTTGGGATGGT
TTTACTTGATTGTTATTTAGAAGGCCAACTATGGAGTAAATTAGGCCCAT
CAAAAGAACGAATTGCAATGAAATTGATTGATATGTTTTCAACTACTAAT
AACAATGAAAGTGCATTATCTGAAATTTGTAAATGGAGTGGTTGTGATCA
CAAAATGAAATTGATCGATCCAAAGTTTTCATCTTTTCTGAAACTATGCT
TACAAGCTGATCCAAGAAAGCGTGGTTCCAAAATGAGGGAAATTCTATCG
CATGAATTCATTAAACCATTACATGAACCTGAGAAAATGAATCTATCAGT
CCCAAGCCCTTTTCCAGCTGTATATCGATCACATAGTATTCAACAGTTAC
CTGACTTCAACGCTCTATTACTAAAAAACCGAGAAGAATGTACTCTTGAA
TCCTTACTAAGCGAACGTTCGATTTTTGAGATATACCATCTTTGGTGTTT
GACTGGTGGTGATGTCTTTGTGGAGCTGAAAAGAGCACATTTGTTGAATT
CCAAAGCACCAGTTTTGGCGTTACCGACAGCTATCCTTAACAACGGTGAA
GAGTATGGAGTCTCAGAGGAAGAATCCATTGTCTTAACTGCAAACACAGT
CTGTATCAATTTAACCCAACTTTACGATCGATTATCGGGTATAGATTTAA
CGTCTTTCTACCCACTAGTGGTACATGATGACCTCTATCCAGTCGATTTG
TCCGATTCCATGAAACTACCTTTGGTTATTCGTGAAGAGAGCGCAGGCTA
TCAATTCCATCGTATTGTGCTTTTCGAGCGTCTGTTAGAAGGCTATCCAT
ACACGCGGGATCGGATCGTCAAAGAAGCCAGAATTGATATTCCACCCTAT
GTGAGAGCTAAGGTTTGGGCAGCTTTGCTGAACATCTCTGGCGACATATT
TGAAGCTTACGATATGGTTGATAAAGTCTCCATGACAGCTACAGATCGTC
AAATTGAAGTTGATATTCCACGTTGTCATCAATACGATAATCTATTGTCA
TCACCAGTTGGTCATTCAAAGCTGAAATCTGTCCTCAAAGCTTGGGTTGT
CACTAATGCACCGAAACTGGTTTACTGGCAAGGCTTAGATTCCTTATGTG
CACCTTTcttgaaattgaatttcaataacgAGGCACTCGCTTTTGCTTGC
TTATCAGCATTCGTTCCAAAGTATTTATACCATTTCTTCTTGAAAGATAA
CTCGATGGTTATTCATGAATATTTAGCAGTGTTCAAGCAGTTGATTGCCT
TTCATGATCCAGAGCTGTTTAACCATTTAAATGAGATTGGATTTCAACCA
GAATTGTACGCGATCCCTTGGTTCTTGACCATGTTTTCACACGTTTTCCC
GCTACAGAAAATCTACCATTTATGGGACACGCTCCTTCTCGGAAGCTCTA
TGTTACCACTTTGTGTTGGAGTCTCCATCTTAGAGCAGTTTCGAGAGCAA
CTCCTCTCATTTGCGTTTAATGATtgcattcttttgttttccgaTATGCC
TGGCATTGATATTGAGAAGTGTGTCAAAGATTCTATTAAACTTTTCAACC
ATACTCCACCCTCTGCCTCTCTCCGCCAACAAGACAACCCTGAAAACAGA
ATGAAGGCGCCCTCAGAAGAACAATTCATGAACTTACCTGAGAAAGAATT
CCTCCCGCTAGCATCGTTACGCTCTGAAATTTGCTCACGTATCTCACCAA
GAGATTTAATTCGAATCTCGAAGCTCACTCAACAGTTAGAATCATATCCC
ATCTCGTCACGTGATCAGAATTTATCCAATGGGAAAGCAGCAAATGGTTc
taaagacaaaaagaaaaaagacaagaaaaagACTGTAGATAACAATGCTC
AGCAGCAAAAAGTTTTGGTTGTAGACACACGACCAGCAGAAGAATTCACA
GCAGGACACTTACAACATAGTGTAAACATACCCTACGATCAATCAGTCGA
TGAAAACGGTCAACTCATTCCAACTCCCCAAACAAGCATCCTTGAGGCTC
ACAAAGGCCGTATTATTATGATCATGGGCCTCAAAGGGCCAGAACCCATG
AAGCTAGGTGAATTGTTGGTAATGTTAAACTATCGACGTGTTTGCGTGAT
GGATGGTTCAACGAGCATTTTGAAAAGTCTAGGATATTTCACAACCGTCG
GTAATGCATAGTCTTTCATCAGAGTCTGATTCATCTGACTTCATCtgttg
ggcttttccagaaataaattgaatatgggggatggaggatataacatttt
ttgggtATTTACCCCCCGGATAGCAGGTGTAACCTGGACAAGCATtagtt
aaccccctggacacacaAACTTGCCCCCAAACAGGgcaagtttacccccc
ggacgaggcaaattttgcagatttttcactacccccagacactatatcct
ccacccccatgtacaaacattgtctggaagagcccattattttttgttga
acattttttctttttaaaccgCCTCGCGTAggggttttcaaa

Run BLAST on NCBI

protein sequence of TCONS_00023810-protein

>TCONS_00023810-protein ID=TCONS_00023810-protein|Name=TCONS_00023810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=909bp
MVGGKLGGANLGLFSFLASSHPTDTCGQNGLPVTPNSIRILGRFQKLKLL
QHPHLCQYVDIVRGKHERLVIVSEFYTTNLKTLIKKKFQFRTVAEIQKLG
YEILLALEFLSNQGYVHRNLSSENILFDEDDHVKLSQYGLYNMTNFTDEV
VFTVGDTRYMAPEVIVSGLGYNPLYGPSDNAVDIWSFGMVLLDCYLEGQL
WSKLGPSKERIAMKLIDMFSTTNNNESALSEICKWSGCDHKMKLIDPKFS
SFLKLCLQADPRKRGSKMREILSHEFIKPLHEPEKMNLSVPSPFPAVYRS
HSIQQLPDFNALLLKNREECTLESLLSERSIFEIYHLWCLTGGDVFVELK
RAHLLNSKAPVLALPTAILNNGEEYGVSEEESIVLTANTVCINLTQLYDR
LSGIDLTSFYPLVVHDDLYPVDLSDSMKLPLVIREESAGYQFHRIVLFER
LLEGYPYTRDRIVKEARIDIPPYVRAKVWAALLNISGDIFEAYDMVDKVS
MTATDRQIEVDIPRCHQYDNLLSSPVGHSKLKSVLKAWVVTNAPKLVYWQ
GLDSLCAPFLKLNFNNEALAFACLSAFVPKYLYHFFLKDNSMVIHEYLAV
FKQLIAFHDPELFNHLNEIGFQPELYAIPWFLTMFSHVFPLQKIYHLWDT
LLLGSSMLPLCVGVSILEQFREQLLSFAFNDCILLFSDMPGIDIEKCVKD
SIKLFNHTPPSASLRQQDNPENRMKAPSEEQFMNLPEKEFLPLASLRSEI
CSRISPRDLIRISKLTQQLESYPISSRDQNLSNGKAANGSKDKKKKDKKK
TVDNNAQQQKVLVVDTRPAEEFTAGHLQHSVNIPYDQSVDENGQLIPTPQ
TSILEAHKGRIIMIMGLKGPEPMKLGELLVMLNYRRVCVMDGSTSILKSL
GYFTTVGNA

Run BLAST on NCBI

transcript from alignment at sc0000462:224117..227370+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023810 ID=TCONS_00023810|Name=TCONS_00023810|organism=Clytia hemisphaerica|type=transcript|length=3254bp|location=Sequence derived from alignment at sc0000462:224117..227370+ (Clytia hemisphaerica)
ATCAATTGGCTTCTATGGCCtattttgaagtattttaattttgatgcTGA
TTTACAAGCTTCTACaattattttccttttatttgcagactaaataaaaa
atgaaaaaatcagaaTAAACATAAAGCTATCATGGTTGGTGGAAAATTAG
GTGGTGCTAATTTGGgattattttcctttttggcATCATCTCACCCGACA
GACACTTGTGGACAAAATGGATTACCGGTCACGCCAAACTCTATCCGCAT
CTTGGGACggtttcaaaaattgaaacttcTGCAACATCCTCATTTGTGTC
AATATGTTGACATTGTACGTGGAAAACATGAACGTCTTGTAATAGTGTCA
GAATTCTACACAACCAATCTGAAAACTTTGATTAAAAAGAAGTTTCAATT
TCGTACTGTAGCTGAAATCCAAAAATTGGGTTATGAGATTTTATTAGCAC
TTGAATTCCTCTCTAATCAAGGTTATGTACACCGAAATCTGTcctctgaa
aatattttatttgatgAAGATGACCATGTGAAATTATCCCAATACGGTTT
ATATAATATGACAAATTTTACTGATGAGGTTGTGTTTACGGTTGGTGATA
CTCGTTACATGGCACCAGAAGTGATTGTGTCTGGCCTTGGATATAATCCA
TTATACGGGCCATCAGACAATGCAGTTGATATTTGGTCATTTGGGATGGT
TTTACTTGATTGTTATTTAGAAGGCCAACTATGGAGTAAATTAGNTGGTC
ATTGGGGATGGTTTTACTTGATTGCTATTTAGAAGGCCAACTATGGAGTA
AATTAGGCCCATCAAAAGAACGAATTGCAATGAAATTGATTGATATGTTT
TCAACTACTAATAACAATGAAAGTGCATTATCTGAAATTTGTAAATGGAG
TGGTTGTGATCACAAAATGAAATTGATCGATCCAAAGTTTTCATCTTTTC
TGAAACTATGCTTACAAGCTGATCCAAGAAAGCGTGGTTCCAAAATGAGG
GAAATTCTATCGCATGAATTCATTAAACCATTACATGAACCTGAGAAAAT
GAATCTATCAGTCCCAAGCCCTTTTCCAGCTGTATATCGATCACATAGTA
TTCAACAGTTACCTGACTTCAACGCTCTATTACTAAAAAACCGAGAAGAA
TGTACTCTTGAATCCTTACTAAGCGAACGTTCGATTTTTGAGATATACCA
TCTTTGGTGTTTGACTGGTGGTGATGTCTTTGTGGAGCTGAAAAGAGCAC
ATTTGTTGAATTCCAAAGCACCAGTTTTGGCGTTACCGACAGCTATCCTT
AACAACGGTGAAGAGTATGGAGTCTCAGAGGAAGAATCCATTGTCTTAAC
TGCAAACACAGTCTGTATCAATTTAACCCAACTTTACGATCGATTATCGG
GTATAGATTTAACGTCTTTCTACCCACTAGTGGTACATGATGACCTCTAT
CCAGTCGATTTGTCCGATTCCATGAAACTACCTTTGGTTATTCGTGAAGA
GAGCGCAGGCTATCAATTCCATCGTATTGTGCTTTTCGAGCGTCTGTTAG
AAGGCTATCCATACACGCGGGATCGGATCGTCAAAGAAGCCAGAATTGAT
ATTCCACCCTATGTGAGAGCTAAGGTTTGGGCAGCTTTGCTGAACATCTC
TGGCGACATATTTGAAGCTTACGATATGGTTGATAAAGTCTCCATGACAG
CTACAGATCGTCAAATTGAAGTTGATATTCCACGTTGTCATCAATACGAT
AATCTATTGTCATCACCAGTTGGTCATTCAAAGCTGAAATCTGTCCTCAA
AGCTTGGGTTGTCACTAATGCACCGAAACTGGTTTACTGGCAAGGCTTAG
ATTCCTTATGTGCACCTTTcttgaaattgaatttcaataacgAGGCACTC
GCTTTTGCTTGCTTATCAGCATTCGTTCCAAAGTATTTATACCATTTCTT
CTTGAAAGATAACTCGATGGTTATTCATGAATATTTAGCAGTGTTCAAGC
AGTTGATTGCCTTTCATGATCCAGAGCTGTTTAACCATTTAAATGAGATT
GGATTTCAACCAGAATTGTACGCGATCCCTTGGTTCTTGACCATGTTTTC
ACACGTTTTCCCGCTACAGAAAATCTACCATTTATGGGACACGCTCCTTC
TCGGAAGCTCTATGTTACCACTTTGTGTTGGAGTCTCCATCTTAGAGCAG
TTTCGAGAGCAACTCCTCTCATTTGCGTTTAATGATtgcattcttttgtt
ttccgaTATGCCTGGCATTGATATTGAGAAGTGTGTCAAAGATTCTATTA
AACTTTTCAACCATACTCCACCCTCTGCCTCTCTCCGCCAACAAGACAAC
CCTGAAAACAGAATGAAGGCGCCCTCAGAAGAACAATTCATGAACTTACC
TGAGAAAGAATTCCTCCCGCTAGCATCGTTACGCTCTGAAATTTGCTCAC
GTATCTCACCAAGAGATTTAATTCGAATCTCGAAGCTCACTCAACAGTTA
GAATCATATCCCATCTCGTCACGTGATCAGAATTTATCCAATGGGAAAGC
AGCAAATGGTTctaaagacaaaaagaaaaaagacaagaaaaagACTGTAG
ATAACAATGCTCAGCAGCAAAAAGTTTTGGTTGTAGACACACGACCAGCA
GAAGAATTCACAGCAGGACACTTACAACATAGTGTAAACATACCCTACGA
TCAATCAGTCGATGAAAACGGTCAACTCATTCCAACTCCCCAAACAAGCA
TCCTTGAGGCTCACAAAGGCCGTATTATTATGATCATGGGCCTCAAAGGG
CCAGAACCCATGAAGCTAGGTGAATTGTTGGTAATGTTAAACTATCGACG
TGTTTGCGTGATGGATGGTTCAACGAGCATTTTGAAAAGTCTAGGATATT
TCACAACCGTCGGTAATGCATAGTCTTTCATCAGAGTCTGATTCATCTGA
CTTCATCtgttgggcttttccagaaataaattgaatatgggggatggagg
atataacattttttgggtATTTACCCCCCGGATAGCAGGTGTAACCTGGA
CAAGCATtagttaaccccctggacacacaAACTTGCCCCCAAACAGGgca
agtttaccccccggacgaggcaaattttgcagatttttcactacccccag
acactatatcctccacccccatgtacaaacattgtctggaagagcccatt
attttttgttgaacattttttctttttaaaccgCCTCGCGTAggggtttt
caaa

Coding sequence (CDS) from alignment at sc0000462:224117..227370+

>TCONS_00023810 ID=TCONS_00023810|Name=TCONS_00023810|organism=Clytia hemisphaerica|type=CDS|length=5460bp|location=Sequence derived from alignment at sc0000462:224117..227370+ (Clytia hemisphaerica)
ATGGTTGGTGGAAAATTAGGTGGTGCTAATTTGGgattattttccttttt
ggcATCATCTCACCCGACAGACACTTGTGGACAAAATGGATTACCGGTCA
CGCCAAACTCTATCCGCATCTTGGGACggtttcaaaaattgaaacttcTG
CAACATCCTCATTTGTGTCAATATGTTGACATTGTACGTGGAAAACATGA
ACGTCTTGTAATAGTGTCAGAATTCTACACAACCAATCTGAAAACTTTGA
TTAAAAAGAAGTTTCAATTTCGTACTGTAGCTGAAATCCAAAAATTGGGT
TATGAGATTTTATTAGCACTTGAATTCCTCTCTAATCAAGGTTATGTACA
CCGAAATCTGTcctctgaaaatattttatttgatgAAGATGACCATGTGA
AATTATCCCAATACGGTTTATATAATATGACAAATTTTACTGATGAGGTT
GTGTTTACGGTTGGTGATACTCGTTACATGGCACCAGAAGTGATTGTGTC
TGGCCTTGGATATAATCCATTATACGGGCCATCAGACAATGCAGTTGATA
TTTGGTCATTTGGGATGGTTTTACTTGATTGTTATTTAGAAGGCCAACTA
TGGAGTAAATTAGGCCCATCAAAAGAACGAATTGCAATGAAATTGATTGA
TATGTTTTCAACTACTAATAACAATGAAAGTGCATTATCTGAAATTTGTA
AATGGAGTGGTTGTGATCACAAAATGAAATTGATCGATCCAAAGTTTTCA
TCTTTTCTGAAACTATGCTTACAAGCTGATCCAAGAAAGCGTGGTTCCAA
AATGAGGGAAATTCTATCGCATGAATTCATTAAACCATTACATGAACCTG
AGAAAATGAATCTATCAGTCCCAAGCCCTTTTCCAGCTGTATATCGATCA
CATAGTATTCAACAGTTACCTGACTTCAACGCTCTATTACTAAAAAACCG
AGAAGAATGTACTCTTGAATCCTTACTAAGCGAACGTTCGATTTTTGAGA
TATACCATCTTTGGTGTTTGACTGGTGGTGATGTCTTTGTGGAGCTGAAA
AGAGCACATTTGTTGAATTCCAAAGCACCAGTTTTGGCGTTACCGACAGC
TATCCTTAACAACGGTGAAGAGTATGGAGTCTCAGAGGAAGAATCCATTG
TCTTAACTGCAAACACAGTCTGTATCAATTTAACCCAACTTTACGATCGA
TTATCGGGTATAGATTTAACGTCTTTCTACCCACTAGTGGTACATGATGA
CCTCTATCCAGTCGATTTGTCCGATTCCATGAAACTACCTTTGGTTATTC
GTGAAGAGAGCGCAGGCTATCAATTCCATCGTATTGTGCTTTTCGAGCGT
CTGTTAGAAGGCTATCCATACACGCGGGATCGGATCGTCAAAGAAGCCAG
AATTGATATTCCACCCTATGTGAGAGCTAAGGTTTGGGCAGCTTTGCTGA
ACATCTCTGGCGACATATTTGAAGCTTACGATATGGTTGATAAAGTCTCC
ATGACAGCTACAGATCGTCAAATTGAAGTTGATATTCCACGTTGTCATCA
ATACGATAATCTATTGTCATCACCAGTTGGTCATTCAAAGCTGAAATCTG
TCCTCAAAGCTTGGGTTGTCACTAATGCACCGAAACTGGTTTACTGGCAA
GGCTTAGATTCCTTATGTGCACCTTTcttgaaattgaatttcaataacgA
GGCACTCGCTTTTGCTTGCTTATCAGCATTCGTTCCAAAGTATTTATACC
ATTTCTTCTTGAAAGATAACTCGATGGTTATTCATGAATATTTAGCAGTG
TTCAAGCAGTTGATTGCCTTTCATGATCCAGAGCTGTTTAACCATTTAAA
TGAGATTGGATTTCAACCAGAATTGTACGCGATCCCTTGGTTCTTGACCA
TGTTTTCACACGTTTTCCCGCTACAGAAAATCTACCATTTATGGGACACG
CTCCTTCTCGGAAGCTCTATGTTACCACTTTGTGTTGGAGTCTCCATCTT
AGAGCAGTTTCGAGAGCAACTCCTCTCATTTGCGTTTAATGATtgcattc
ttttgttttccgaTATGCCTGGCATTGATATTGAGAAGTGTGTCAAAGAT
TCTATTAAACTTTTCAACCATACTCCACCCTCTGCCTCTCTCCGCCAACA
AGACAACCCTGAAAACAGAATGAAGGCGCCCTCAGAAGAACAATTCATGA
ACTTACCTGAGAAAGAATTCCTCCCGCTAGCATCGTTACGCTCTGAAATT
TGCTCACGTATCTCACCAAGAGATTTAATTCGAATCTCGAAGCTCACTCA
ACAGTTAGAATCATATCCCATCTCGTCACGTGATCAGAATTTATCCAATG
GGAAAGCAGCAAATGGTTctaaagacaaaaagaaaaaagacaagaaaaag
ACTGTAGATAACAATGCTCAGCAGCAAAAAGTTTTGGTTGTAGACACACG
ACCAGCAGAAGAATTCACAGCAGGACACTTACAACATAGTGTAAACATAC
CCTACGATCAATCAGTCGATGAAAACGGTCAACTCATTCCAACTCCCCAA
ACAAGCATCCTTGAGGCTCACAAAGGCCGTATTATTATGATCATGGGCCT
CAAAGGGCCAGAACCCATGAAGCTAGGTGAATTGTTGGTAATGTTAAACT
ATCGACGTGTTTGCGTGATGGATGGTTCAACGAGCATTTTGAAAAGTCTA
GGATATTTCACAACCGTCGGTAATGCATAGATGGTTGGTGGAAAATTAGG
TGGTGCTAATTTGGgattattttcctttttggcATCATCTCACCCGACAG
ACACTTGTGGACAAAATGGATTACCGGTCACGCCAAACTCTATCCGCATC
TTGGGACggtttcaaaaattgaaacttcTGCAACATCCTCATTTGTGTCA
ATATGTTGACATTGTACGTGGAAAACATGAACGTCTTGTAATAGTGTCAG
AATTCTACACAACCAATCTGAAAACTTTGATTAAAAAGAAGTTTCAATTT
CGTACTGTAGCTGAAATCCAAAAATTGGGTTATGAGATTTTATTAGCACT
TGAATTCCTCTCTAATCAAGGTTATGTACACCGAAATCTGTcctctgaaa
atattttatttgatgAAGATGACCATGTGAAATTATCCCAATACGGTTTA
TATAATATGACAAATTTTACTGATGAGGTTGTGTTTACGGTTGGTGATAC
TCGTTACATGGCACCAGAAGTGATTGTGTCTGGCCTTGGATATAATCCAT
TATACGGGCCATCAGACAATGCAGTTGATATTTGGTCATTTGGGATGGTT
TTACTTGATTGTTATTTAGAAGGCCAACTATGGAGTAAATTAGGCCCATC
AAAAGAACGAATTGCAATGAAATTGATTGATATGTTTTCAACTACTAATA
ACAATGAAAGTGCATTATCTGAAATTTGTAAATGGAGTGGTTGTGATCAC
AAAATGAAATTGATCGATCCAAAGTTTTCATCTTTTCTGAAACTATGCTT
ACAAGCTGATCCAAGAAAGCGTGGTTCCAAAATGAGGGAAATTCTATCGC
ATGAATTCATTAAACCATTACATGAACCTGAGAAAATGAATCTATCAGTC
CCAAGCCCTTTTCCAGCTGTATATCGATCACATAGTATTCAACAGTTACC
TGACTTCAACGCTCTATTACTAAAAAACCGAGAAGAATGTACTCTTGAAT
CCTTACTAAGCGAACGTTCGATTTTTGAGATATACCATCTTTGGTGTTTG
ACTGGTGGTGATGTCTTTGTGGAGCTGAAAAGAGCACATTTGTTGAATTC
CAAAGCACCAGTTTTGGCGTTACCGACAGCTATCCTTAACAACGGTGAAG
AGTATGGAGTCTCAGAGGAAGAATCCATTGTCTTAACTGCAAACACAGTC
TGTATCAATTTAACCCAACTTTACGATCGATTATCGGGTATAGATTTAAC
GTCTTTCTACCCACTAGTGGTACATGATGACCTCTATCCAGTCGATTTGT
CCGATTCCATGAAACTACCTTTGGTTATTCGTGAAGAGAGCGCAGGCTAT
CAATTCCATCGTATTGTGCTTTTCGAGCGTCTGTTAGAAGGCTATCCATA
CACGCGGGATCGGATCGTCAAAGAAGCCAGAATTGATATTCCACCCTATG
TGAGAGCTAAGGTTTGGGCAGCTTTGCTGAACATCTCTGGCGACATATTT
GAAGCTTACGATATGGTTGATAAAGTCTCCATGACAGCTACAGATCGTCA
AATTGAAGTTGATATTCCACGTTGTCATCAATACGATAATCTATTGTCAT
CACCAGTTGGTCATTCAAAGCTGAAATCTGTCCTCAAAGCTTGGGTTGTC
ACTAATGCACCGAAACTGGTTTACTGGCAAGGCTTAGATTCCTTATGTGC
ACCTTTcttgaaattgaatttcaataacgAGGCACTCGCTTTTGCTTGCT
TATCAGCATTCGTTCCAAAGTATTTATACCATTTCTTCTTGAAAGATAAC
TCGATGGTTATTCATGAATATTTAGCAGTGTTCAAGCAGTTGATTGCCTT
TCATGATCCAGAGCTGTTTAACCATTTAAATGAGATTGGATTTCAACCAG
AATTGTACGCGATCCCTTGGTTCTTGACCATGTTTTCACACGTTTTCCCG
CTACAGAAAATCTACCATTTATGGGACACGCTCCTTCTCGGAAGCTCTAT
GTTACCACTTTGTGTTGGAGTCTCCATCTTAGAGCAGTTTCGAGAGCAAC
TCCTCTCATTTGCGTTTAATGATtgcattcttttgttttccgaTATGCCT
GGCATTGATATTGAGAAGTGTGTCAAAGATTCTATTAAACTTTTCAACCA
TACTCCACCCTCTGCCTCTCTCCGCCAACAAGACAACCCTGAAAACAGAA
TGAAGGCGCCCTCAGAAGAACAATTCATGAACTTACCTGAGAAAGAATTC
CTCCCGCTAGCATCGTTACGCTCTGAAATTTGCTCACGTATCTCACCAAG
AGATTTAATTCGAATCTCGAAGCTCACTCAACAGTTAGAATCATATCCCA
TCTCGTCACGTGATCAGAATTTATCCAATGGGAAAGCAGCAAATGGTTct
aaagacaaaaagaaaaaagacaagaaaaagACTGTAGATAACAATGCTCA
GCAGCAAAAAGTTTTGGTTGTAGACACACGACCAGCAGAAGAATTCACAG
CAGGACACTTACAACATAGTGTAAACATACCCTACGATCAATCAGTCGAT
GAAAACGGTCAACTCATTCCAACTCCCCAAACAAGCATCCTTGAGGCTCA
CAAAGGCCGTATTATTATGATCATGGGCCTCAAAGGGCCAGAACCCATGA
AGCTAGGTGAATTGTTGGTAATGTTAAACTATCGACGTGTTTGCGTGATG
GATGGTTCAACGAGCATTTTGAAAAGTCTAGGATATTTCACAACCGTCGG
TAATGCATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013377	XLOC_013377	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023810-protein	TCONS_00023810-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023810-exon-sc0000462-1491911889:224117..224839	TCONS_00023810-exon-sc0000462-1491911889:224117..224839	Clytia hemisphaerica	exon
TCONS_00023810-exon-sc0000462-1510915933:224117..224839	TCONS_00023810-exon-sc0000462-1510915933:224117..224839	Clytia hemisphaerica	exon
TCONS_00023810-exon-sc0000462-1575043694:224117..224839	TCONS_00023810-exon-sc0000462-1575043694:224117..224839	Clytia hemisphaerica	exon
TCONS_00023810-exon-sc0000462-1491911889:224902..227370	TCONS_00023810-exon-sc0000462-1491911889:224902..227370	Clytia hemisphaerica	exon
TCONS_00023810-exon-sc0000462-1510915933:224902..227370	TCONS_00023810-exon-sc0000462-1510915933:224902..227370	Clytia hemisphaerica	exon
TCONS_00023810-exon-sc0000462-1575043694:224902..227370	TCONS_00023810-exon-sc0000462-1575043694:224902..227370	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000462	supercontig	sc0000462:224117..227370 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50148	2.5755	1.10423	0.766764	20.5496	15.5077	13.8402	14.9473	6.78403	9.136	7.63939	5.83659	5.16439	5.29012	5.55347	7.46125	9.42807	7.5078	3.10407	3.88571	5.72031	5.62988	10.9159	11.1663	7.34236	8.37629	4.51734	2.78471	12.372	12.2392

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GTPase-TBC_dom
IPR001763	Rhodanese-like_dom
IPR000719	Prot_kinase_dom
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Blast

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BLAST of TCONS_00023810 vs. Swiss-Prot (Human)
Match: TBCK (TBC domain-containing protein kinase-like protein OS=Homo sapiens GN=TBCK PE=1 SV=4)

HSP 1 Score: 743.806 bits (1919), Expect = 0.000e+0
Identity = 413/927 (44.55%), Postives = 564/927 (60.84%), Query Frame = 3

Query:  147 LGGANLGLFSFLASSHPTDTCGQNGLPVTPNSIRILGRFQKLKLLQHPHLCQYVDIVRGKHERLVIVSEFYTTNLKTLIKKKFQFRTVAEIQKLGYEILLALEFLSNQGYVHRNLSSENILFDEDDHVKLSQYGLYNMTNFTDEVVFTVGDTRYMAPEVIVSGLGYNPLYGPSDNAV------DIWSFGMVLLDCYLEGQLWSKLGPSKERIAMKLIDMFSTTNNNESALSEICKWSGCDHKMKLIDPKFSSFLKLCLQADPRKRGSKMREILSHEF--IKPLHEPEKMNLSVPSPFPAVYRSHSIQQLPDFNALLLKNREECTLESLLSERSIFEIYHLWCLTGGDVFVELKRAHLLNSKAPVLALPTAILNNGEEYGVSEEESIVLTANTVCINLTQLYDRLSGIDLTSFYPLVVHDDLYPV-------DLSDSMKLPLVIREESAGYQFHRIVLFERLLEGYPYTRDRIVKEARIDIPPYVRAKVWAALLNISGDIFEAYDMVDKVSMTATDRQIEVDIPRCHQYDNLLSSPVGHSKLKSVLKAWVVTNAPKLVYWQGLDSLCAPFLKLNFNNEALAFACLSAFVPKYLYHFFLKDNSMVIHEYLAVFKQLIAFHDPELFNHLNEIGFQPELYAIPWFLTMFSHVFPLQKIYHLWDTLLLGSSMLPLCVGVSILEQFREQLLSFAFNDCILLFSDMPGIDIEKCVKDSIKLFNHTPPSASLRQQDNPEN--------RMKAPSEEQFMNLPEK-----EFLPLASLRSEICSRISPRDLIRISKLTQQLESYPISSRDQNLSNGKAANGSXXXXXXXXXXTVDNNAQQQKVLVVDTRPAEEFTAGHLQHSVNIPYDQSVDENGQLIPTPQTSILEAHKGRIIMIMGLKGPEPMKLGELLVMLNYRRVCVMDGSTSILKSLGYFT 2843
            L  A +G F+F AS+ P D CG NGLP+TPNSI+ILGRFQ LK + HP LCQYVDI RGKHERLV+V+E    +L+ L++++ +  + + +  + +E+L  L++++  G VHR LS  NIL D   H+KL+++GLY+MT   D+V F +G   Y+APEVI  G+     + PS   +      D+WS G++L +  +  +L+  L  S ER+   L     T +  +  L  + +  GC   +K +       L  CL   P KR +  + +    F  + PL+ P     S+   F +  R   +  LP+  + L K+         L+ERSI E+Y+LWCL GGD+  EL    ++ SK P+  LP  +  +GE +G   + S +L   TV ++L QL +RL  +   +FYPL+  DD   +       +LS +  LPL+IRE+   YQ +RI+LF+RLL+ YPY +++I KEAR+DIPP +R   WAALL + G I   YD +DK +   TDRQIEVDIPRCHQYD LLSSP GH+K + VLKAWVV++ P LVYWQGLDSLCAPFL LNFNNEALA+AC+SAF+PKYLY+FFLKDNS VI EYL VF Q+IAFHDPEL NHLNEIGF P+LYAIPWFLTMF+HVFPL KI+HLWDTLLLG+S  P C+GV+IL+Q R++LL+  FN+CILLFSD+P IDIE+CV++SI LF  TP SA+ RQ   P          R  AP        P K     E +PL  L+SE+  RIS  DLI + +LT                               K  +    + + K+LVVD R +E+F  GH+  S+NIP+  +    G+L   P T++L+  KG++I+I+G       +    LV + Y R+C++DG  + +K  G  T
Sbjct:    4 LKDAEMGAFTFFASALPHDVCGSNGLPLTPNSIKILGRFQILKTITHPRLCQYVDISRGKHERLVVVAEHCERSLEDLLRER-KPVSCSTVLCIAFEVLQGLQYMNKHGIVHRALSPHNILLDRKGHIKLAKFGLYHMTAHGDDVDFPIGYPSYLAPEVIAQGIFKTTDHMPSKKPLPSGPKSDVWSLGIILFELCVGRKLFQSLDIS-ERLKFLL-----TLDCVDDTLIVLAEEHGCLDIIKELPETVIDLLNKCLTFHPSKRPTPDQLMKDKVFSEVSPLYTPFTKPASL---FSSSLRCADLT-LPEDISQLCKDINN----DYLAERSIEEVYYLWCLAGGDLEKELVNKEIIRSKPPICTLPNFLFEDGESFGQGRDRSSLLDDTTVTLSLCQLRNRLKDVGGEAFYPLL-EDDQSNLPHSNSNNELSAAATLPLIIREKDTEYQLNRIILFDRLLKAYPYKKNQIWKEARVDIPPLMRGLTWAALLGVEGAIHAKYDAIDKDTPIPTDRQIEVDIPRCHQYDELLSSPEGHAKFRRVLKAWVVSH-PDLVYWQGLDSLCAPFLYLNFNNEALAYACMSAFIPKYLYNFFLKDNSHVIQEYLTVFSQMIAFHDPELSNHLNEIGFIPDLYAIPWFLTMFTHVFPLHKIFHLWDTLLLGNSSFPFCIGVAILQQLRDRLLANGFNECILLFSDLPEIDIERCVRESINLFCWTPKSATYRQHAQPPKPSSDSSGGRSSAPYFSAECPDPPKTDLSRESIPLNDLKSEVSPRISAEDLIDLCELT--------------------------VTGHFKTPSKKTKSSKPKLLVVDIRNSEDFIRGHISGSINIPFSAAFTAEGELTQGPYTAMLQNFKGKVIVIVGHVAKHTAEFAAHLVKMKYPRICILDGGINKIKPTGLLT 887

The following BLAST results are available for this feature:

BLAST of TCONS_00023810 vs. Swiss-Prot (Human)

BLAST of TCONS_00023810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBCK	0.000e+0	44.55	TBC domain-containing protein kinase-like protein ...	[more]

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TCONS_00023810 (transcript) - C. hemisphaerica