TCONS_00023844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023844
Unique NameTCONS_00023844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023844 ID=TCONS_00023844|Name=TCONS_00023844|organism=Clytia hemisphaerica|type=transcript|length=699bp
GGATTGTCCTTCCTTCAACTTGTTAGCAACAGAACAACCCTCCAAAGCCT
TTAGATGGCTTTAGTATACGCGGTGTGATCGCACGGTGGTGAGTCTCTAT
TATGTATATATTCTTAATCCTTGCTTAGATCCTTATGGCTTTAAATGTTT
TATCGTAAGAAAATCCTGACTATACATTTGCCATGCATTAAGGTCgtatt
tccttattttttgtgacttttttatttcagtgaCGTGACATTTGGGTCAT
CATTCATTCAGTTACTGTAACGGTTCCTTTCATATTACCTAATCAATGTC
TTTATTCCACAAGAAAAACATATGATTTTCACTCTTATATCTCTTCATCA
CACACATAACTTTTTCTCATCTCTCATTTGAAGGTGTGAGCGTCCATTCC
AGCAGCTTTGGCAAGATCAGGAAGTTCATTGTTGTATCCTTCTTTGCCAG
TCAAGAAAAAGGTAACGATTGTTCCTTTACCCTGTGAAAAATGATCAAGT
TTAGCCAATTTAGCACTTACTACTGATGAACACTTATGATTATAGAATAT
TAAGataagtgaacaaaaaagtaaaatcaacacagtttgttttttacgat
atttcgttctattttcagaacttcatcaGGTATAATACTGCACAAGCGTT
AACACATTTTTAAATGCTACAAAAATCAGTGATGCGTAAAAAAGgcgag
Run BLAST on NCBI

transcript from alignment at sc0000463:199471..200169+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023844 ID=TCONS_00023844|Name=TCONS_00023844|organism=Clytia hemisphaerica|type=transcript|length=699bp|location=Sequence derived from alignment at sc0000463:199471..200169+ (Clytia hemisphaerica)
GGATTGTCCTTCCTTCAACTTGTTAGCAACAGAACAACCCTCCAAAGCCT
TTAGATGGCTTTAGTATACGCGGTGTGATCGCACGGTGGTGAGTCTCTAT
TATGTATATATTCTTAATCCTTGCTTAGATCCTTATGGCTTTAAATGTTT
TATCGTAAGAAAATCCTGACTATACATTTGCCATGCATTAAGGTCgtatt
tccttattttttgtgacttttttatttcagtgaCGTGACATTTGGGTCAT
CATTCATTCAGTTACTGTAACGGTTCCTTTCATATTACCTAATCAATGTC
TTTATTCCACAAGAAAAACATATGATTTTCACTCTTATATCTCTTCATCA
CACACATAACTTTTTCTCATCTCTCATTTGAAGGTGTGAGCGTCCATTCC
AGCAGCTTTGGCAAGATCAGGAAGTTCATTGTTGTATCCTTCTTTGCCAG
TCAAGAAAAAGGTAACGATTGTTCCTTTACCCTGTGAAAAATGATCAAGT
TTAGCCAATTTAGCACTTACTACTGATGAACACTTATGATTATAGAATAT
TAAGataagtgaacaaaaaagtaaaatcaacacagtttgttttttacgat
atttcgttctattttcagaacttcatcaGGTATAATACTGCACAAGCGTT
AACACATTTTTAAATGCTACAAAAATCAGTGATGCGTAAAAAAGgcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013400XLOC_013400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023844-exon-sc0000463-1491911889:199471..200169TCONS_00023844-exon-sc0000463-1491911889:199471..200169Clytia hemisphaericaexon
TCONS_00023844-exon-sc0000463-1510915933:199471..200169TCONS_00023844-exon-sc0000463-1510915933:199471..200169Clytia hemisphaericaexon
TCONS_00023844-exon-sc0000463-1575043694:199471..200169TCONS_00023844-exon-sc0000463-1575043694:199471..200169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000463supercontigsc0000463:199471..200169 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.375137	0.736766	0.327652	0.122618	0.767938	0.487545	1.06132	0.773346	0.625885	0.549588	0.182722	0.750367	0.483942	0.116924	0.431388	0.76421	1.84426	0.786301	1.71799	2.41721	2.05283	2.06883	0.525941	1.11807	0.714002	2.89343	0	0.432175	0.371199	0.586177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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