TCONS_00023845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023845
Unique NameTCONS_00023845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023845 ID=TCONS_00023845|Name=TCONS_00023845|organism=Clytia hemisphaerica|type=transcript|length=662bp
GGATTGTCCTTCCTTCAACTTGTTAGCAACAGAACAACCCTCCAAAGCCT
TTAGATGGCTTTAGTATACGCGGTGTGATCGCACGGTGGTGAGTCTCTAT
TATGTATATATTCTTAATCCTTGCTTAGATCCTTATGGCTTTAAATGTTT
TATCGTAAGAAAATCCTGACTATACATTTGCCATGCATTAAGGTCgtatt
tccttattttttgtgacttttttatttcagtgaCGTGACATTTGGGTCAT
CATTCATTCAGTTACTGTAACGGTTCCTTTCATATTACCTAATCAATGTC
TTTATTCCACAAGAAAAACATATGATTTTCACTCTTATATCTCTTCATCA
CACACATAACTTTTTCTCATCTCTCATTTGAAGGTGTGAGCGTCCATTCC
AGCAGCTTTGGCAAGATCAGGAAGTTCATTGTTGTATCCTTCTTTGCCAG
TCAAGAAAAAGGGACTGGTCCTCGTTCTTCAAGCTCATAGCCACTCAACA
AATCCAAGATCTCTTTACACTCAGGACTAACGTGTATTCTCAATGCCAAT
CCGCTGGATTCCATACGACTCGCATAATTCACTGTATCCCCAAATAAACA
GTACCTTGGCATTTTGAGGCCGACCACTCCAGCGACGCAAGGGCCTAAAA
AGGAATAAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000463:199471..200656+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023845 ID=TCONS_00023845|Name=TCONS_00023845|organism=Clytia hemisphaerica|type=transcript|length=1186bp|location=Sequence derived from alignment at sc0000463:199471..200656+ (Clytia hemisphaerica)
GGATTGTCCTTCCTTCAACTTGTTAGCAACAGAACAACCCTCCAAAGCCT
TTAGATGGCTTTAGTATACGCGGTGTGATCGCACGGTGGTGAGTCTCTAT
TATGTATATATTCTTAATCCTTGCTTAGATCCTTATGGCTTTAAATGTTT
TATCGTAAGAAAATCCTGACTATACATTTGCCATGCATTAAGGTCgtatt
tccttattttttgtgacttttttatttcagtgaCGTGACATTTGGGTCAT
CATTCATTCAGTTACTGTAACGGTTCCTTTCATATTACCTAATCAATGTC
TTTATTCCACAAGAAAAACATATGATTTTCACTCTTATATCTCTTCATCA
CACACATAACTTTTTCTCATCTCTCATTTGAAGGTGTGAGCGTCCATTCC
AGCAGCTTTGGCAAGATCAGGAAGTTCATTGTTGTATCCTTCTTTGCCAG
TCAAGAAAAAGGTAACGATTGTTCCTTTACCCTGTGAAAAATGATCAAGT
TTAGCCAATTTAGCACTTACTACTGATGAACACTTATGATTATAGAATAT
TAAGataagtgaacaaaaaagtaaaatcaacacagtttgttttttacgat
atttcgttctattttcagaacttcatcaGGTATAATACTGCACAAGCGTT
AACACATTTTTAAATGCTACAAAAATCAGTGATGCGTAAAAAAGgcgaga
aataaaaaattctaatgaacaaaggaaaaaattctatagggaataaaaca
aagaaaattaagATAATATAAGATAATATTAAGATAAAATAGCaagaaca
aaatttgaaattaaatgcACACGTTTAGTTAGAAAATTTGAGACGCAGCC
TCAACTCTTGTTATTTTTGTCTAAAATTTTAGGCTTAACTTATCAAAAGT
TACGCTTAAAAAAGCGTCTTGAATTGATTAAATTGATCAGATACCCTATT
TTCTTCAGAAGATAATTTCTCCCTTACCTTCATAGGGACTGGTCCTCGTT
CTTCAAGCTCATAGCCACTCAACAAATCCAAGATCTCTTTACACTCAGGA
CTAACGTGTATTCTCAATGCCAATCCGCTGGATTCCATACGACTCGCATA
ATTCACTGTATCCCCAAATAAACAGTACCTTGGCATTTTGAGGCCGACCA
CTCCAGCGACGCAAGGGCCTAAAAAGGAATAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013400XLOC_013400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023845-exon-sc0000463-1491911889:199471..199931TCONS_00023845-exon-sc0000463-1491911889:199471..199931Clytia hemisphaericaexon
TCONS_00023845-exon-sc0000463-1510915933:199471..199931TCONS_00023845-exon-sc0000463-1510915933:199471..199931Clytia hemisphaericaexon
TCONS_00023845-exon-sc0000463-1575043694:199471..199931TCONS_00023845-exon-sc0000463-1575043694:199471..199931Clytia hemisphaericaexon
TCONS_00023845-exon-sc0000463-1491911889:200456..200656TCONS_00023845-exon-sc0000463-1491911889:200456..200656Clytia hemisphaericaexon
TCONS_00023845-exon-sc0000463-1510915933:200456..200656TCONS_00023845-exon-sc0000463-1510915933:200456..200656Clytia hemisphaericaexon
TCONS_00023845-exon-sc0000463-1575043694:200456..200656TCONS_00023845-exon-sc0000463-1575043694:200456..200656Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000463supercontigsc0000463:199471..200656 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0957489	0	0.208292	0.161223	0.0248619	0.235127	0.238518	0.213032	1.57514	0.34251	0.202766	0	0.0415341	0	0.635135	2.92446	0.843842	0.939755	0	1.08211	1.07144	0.28604	0.186128	0.0840324	0	0
Blast
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BLAST of TCONS_00023845 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.433e-20
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = -3 
Query:  463 GPCVAGVVGLKMPRYCLFGDTVNYASRMESSGLALRIHVSPECKEILDLLSGYELEERGPV 645
            GP  AGVVGLKMPRYCLFGDTVN ASRMES+G AL+IH+S E K +L+   G+ELE RG V
Sbjct:  978 GPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFELELRGDV 1038
The following BLAST results are available for this feature:
BLAST of TCONS_00023845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANPRA5.433e-2070.49Atrial natriuretic peptide receptor 1 OS=Homo sapi... [more]
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