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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023863 ID=TCONS_00023863|Name=TCONS_00023863|organism=Clytia hemisphaerica|type=transcript|length=2274bp
CTTTTGTAATATGGGGTTTTTGATTTCCCCGGATGGTTCGCTTTTTCATT
GGTGCATGggtatcaagaatattttcaaaggtGTTGCTAAAAGTTTCGAA
ATCTGAAAAGTCGCAATCAAAGTTTCGACAAAGATCCGACCGGAAacact
tttcatcaaaatttttaaaagatctaTATTCTATAACTTTAGGCGGGGCC
TTTTTAAAACTAGCTTTGAACATGCTATATATCAAATGATGGTAATCACT
GAGATCTGTATCGAAGGAACCACTTTTTTTGAAGCAAAGGGGCCGATTTG
TAAGGATCAAATCAATGCATCTACCGTTCTCTGATTTAAAGCATGTCGGT
TTTTTTATTAgagattttaaggaaaaagaatctaaaaattttaacatatt
tttatctGATATCTCCTCGTTAAAATCGCCAAAgattaaaatgttttcat
aCGAGGCACCGTAGTGATCGAGAACTTTAGTCAACTCCTCAAGAAAAGGC
TTAAGTTTTTGAAGGCTTGGATTTCGATAAATCGAAAGAATaagccattt
tgattttctcaaatttaGTTCAAGCGTCAAGCATTCGATTCCCTGCGAGA
GTAGGTTATCGTTTAGCTGTCGAAGTGGCAGATCTTTTTTGGCATAAAGC
AAAAGACCTCCACTCTTTTTGGAAAAGTCAAGTCGtattggttttttgaa
gttctTGACAAAAAACTGAGATTTGGTGAAAGAGGAGTCGAGCTTTGTCT
CGGCGACACACAGGATATCTACAAAAGGAAGGATTTTATCTTTGACGTTT
TCAATTTTGTTCCTCAAGGAGTTAATGTTAAGATAAGTAAAAAGGAtacc
actttcatttttaagattttcgagAGGATTCACAGACTTTGTCTTACCAT
CGAGGCTAGGTCCATTTAGTTCATGCTGGTCATGTCAACAATCAATGTAA
TATTGTAGATTTTTCTGTAGCTCGTTGGTTCCATGTACATTTAAATGCAA
TTTGCTGTTGTTTAAGTGTCTTTCAGGGTCGATATTTTCATTGTCAATAA
AGCCAACATTGCATTCATTACACTTTTTCTGCAGAATTTCATTAACCTTC
TTAACATTTCGATTTAAATCATCACCTCTTGGGATAATGCCAGATACCAA
AATACAAGTTTCTTTACTTTCTTCGCTCACCATTTTCGTCAATCCTATGA
TGTTCTCTGCTATGTCTTCAGGCTCTTTTAGCTTCAGATCATTTGTCCCA
CAGTGTATGATAACAGCATCCGGCTTTTTATCTAGTGTTGGTTTAATGTA
GTGTTTCATACAATCCACCTTAGCCCCAGGAAAAGTTTTCACAACAACTT
TGTTCGACTTATTTGATAGTTTGAAACCTTTGATGTATTTGATCATTGAA
TCACCAACAACCGCAACAGTCTTTCTGTTATCATTATTATTGTTAACAGA
GTTTCTCTTTTttctaccttattgtatgttcccagtgtaccttattgtac
attcccagtgtaccttattgtacgttcccagtgtaccttattgtatgttc
cccgggaaccttattgtatgttccccgtgaaccttattgtacgttcccag
tgtaccttattgtatgttccccgggaaccttattgtatgttccccgtgaa
ccttattgtacgttcccagtgtaccttattgtatgttccccgggaacctt
attgtatgttccccgtgaaccttattgtacgttcccagtgtaccttattg
tacgttcctcgtgtaccttattgtatgttccccttgtaccttattgtacg
ttccgcTTGTaccttatagaccttttttcaaaggagacgtcctgttgaat
aattatgtactccagccataaaaacaatgatagagccatgcataattact
gtatcatgcatattgtaataattatgcatggttNttttttaatgttttga
tttacagagGACTTTTCTTGTAGAAGCGTGTAGATGATATCATCCCGATT
TTCAAGCTGCCTCCTTAAAAATTCTACCTCCCTTTTCAAGTGGTCAATAA
ATTTTTCTTCAGTATGGTAACTCTGTTCATGTCTTGAAGAATTTTCATGA
TTCAACGGTTTCAGAAACTCAAGttcatcttttatttttcttgagacaaa
TGTCTTTATTTCATCAagaacttcaattttcagagCGTCTGTGAACTGTT
TGTCGATGAAAGCTTCAGTCTgtctgatttctttttcaaaactagtCTCA
TTTTCATCCATTCTTTTGCATACA Run BLAST on NCBI protein sequence of TCONS_00023863-protein >TCONS_00023863-protein ID=TCONS_00023863-protein|Name=TCONS_00023863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MIKYIKGFKLSNKSNKVVVKTFPGAKVDCMKHYIKPTLDKKPDAVIIHCG
TNDLKLKEPEDIAENIIGLTKMVSEESKETCILVSGIIPRGDDLNRNVKK
VNEILQKKCNECNVGFIDNENIDPERHLNNSKLHLNVHGTNELQKNLQYY
IDC Run BLAST on NCBI transcript from alignment at sc0000463:144791..147064 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023863 ID=TCONS_00023863|Name=TCONS_00023863|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at sc0000463:144791..147064 (Clytia hemisphaerica)
TGTATGCAAAAGAATGGATGAAAATGAGactagttttgaaaaagaaatca
gacAGACTGAAGCTTTCATCGACAAACAGTTCACAGACGctctgaaaatt
gaagttctTGATGAAATAAAGACAtttgtctcaagaaaaataaaagatga
aCTTGAGTTTCTGAAACCGTTGAATCATGAAAATTCTTCAAGACATGAAC
AGAGTTACCATACTGAAGAAAAATTTATTGACCACTTGAAAAGGGAGGTA
GAATTTTTAAGGAGGCAGCTTGAAAATCGGGATGATATCATCTACACGCT
TCTACAAGAAAAGTCctctgtaaatcaaaacattaaaaaaNaaccatgca
taattattacaatatgcatgatacagtaattatgcatggctctatcattg
tttttatggctggagtacataattattcaacaggacgtctcctttgaaaa
aaggtctataaggtACAAgcggaacgtacaataaggtacaaggggaacat
acaataaggtacacgaggaacgtacaataaggtacactgggaacgtacaa
taaggttcacggggaacatacaataaggttcccggggaacatacaataag
gtacactgggaacgtacaataaggttcacggggaacatacaataaggttc
ccggggaacatacaataaggtacactgggaacgtacaataaggttcacgg
ggaacatacaataaggttcccggggaacatacaataaggtacactgggaa
cgtacaataaggtacactgggaatgtacaataaggtacactgggaacata
caataaggtagaaAAAAGAGAAACTCTGTTAACAATAATAATGATAACAG
AAAGACTGTTGCGGTTGTTGGTGATTCAATGATCAAATACATCAAAGGTT
TCAAACTATCAAATAAGTCGAACAAAGTTGTTGTGAAAACTTTTCCTGGG
GCTAAGGTGGATTGTATGAAACACTACATTAAACCAACACTAGATAAAAA
GCCGGATGCTGTTATCATACACTGTGGGACAAATGATCTGAAGCTAAAAG
AGCCTGAAGACATAGCAGAGAACATCATAGGATTGACGAAAATGGTGAGC
GAAGAAAGTAAAGAAACTTGTATTTTGGTATCTGGCATTATCCCAAGAGG
TGATGATTTAAATCGAAATGTTAAGAAGGTTAATGAAATTCTGCAGAAAA
AGTGTAATGAATGCAATGTTGGCTTTATTGACAATGAAAATATCGACCCT
GAAAGACACTTAAACAACAGCAAATTGCATTTAAATGTACATGGAACCAA
CGAGCTACAGAAAAATCTACAATATTACATTGATTGTTGACATGACCAGC
ATGAACTAAATGGACCTAGCCTCGATGGTAAGACAAAGTCTGTGAATCCT
ctcgaaaatcttaaaaatgaaagtggtaTCCTTTTTACTTATCTTAACAT
TAACTCCTTGAGGAACAAAATTGAAAACGTCAAAGATAAAATCCTTCCTT
TTGTAGATATCCTGTGTGTCGCCGAGACAAAGCTCGACTCCTCTTTCACC
AAATCTCAGTTTTTTGTCAagaacttcaaaaaaccaataCGACTTGACTT
TTCCAAAAAGAGTGGAGGTCTTTTGCTTTATGCCAAAAAAGATCTGCCAC
TTCGACAGCTAAACGATAACCTACTCTCGCAGGGAATCGAATGCTTGACG
CTTGAACtaaatttgagaaaatcaaaatggcttATTCTTTCGATTTATCG
AAATCCAAGCCTTCAAAAACTTAAGCCTTTTCTTGAGGAGTTGACTAAAG
TTCTCGATCACTACGGTGCCTCGtatgaaaacattttaatcTTTGGCGAT
TTTAACGAGGAGATATCagataaaaatatgttaaaatttttagattcttt
ttccttaaaatctcTAATAAAAAAACCGACATGCTTTAAATCAGAGAACG
GTAGATGCATTGATTTGATCCTTACAAATCGGCCCCTTTGCTTCAAAAAA
AGTGGTTCCTTCGATACAGATCTCAGTGATTACCATCATTTGATATATAG
CATGTTCAAAGCTAGTTTTAAAAAGGCCCCGCCTAAAGTTATAGAATAta
gatcttttaaaaattttgatgaaaagtgtTTCCGGTCGGATCTTTGTCGA
AACTTTGATTGCGACTTTTCAGATTTCGAAACTTTTAGCAACacctttga
aaatattcttgataccCATGCACCAATGAAAAAGCGAACCATCCGGGGAA
ATCAAAAACCCCATATTACAAAAG Coding sequence (CDS) from alignment at sc0000463:144791..147064 >TCONS_00023863 ID=TCONS_00023863|Name=TCONS_00023863|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0000463:144791..147064 (Clytia hemisphaerica)
ATGATCAAATACATCAAAGGTTTCAAACTATCAAATAAGTCGAACAAAGT
TGTTGTGAAAACTTTTCCTGGGGCTAAGGTGGATTGTATGAAACACTACA
TTAAACCAACACTAGATAAAAAGCCGGATGCTGTTATCATACACTGTGGG
ACAAATGATCTGAAGCTAAAAGAGCCTGAAGACATAGCAGAGAACATCAT
AGGATTGACGAAAATGGTGAGCGAAGAAAGTAAAGAAACTTGTATTTTGG
TATCTGGCATTATCCCAAGAGGTGATGATTTAAATCGAAATGTTAAGAAG
GTTAATGAAATTCTGCAGAAAAAGTGTAATGAATGCAATGTTGGCTTTAT
TGACAATGAAAATATCGACCCTGAAAGACACTTAAACAACAGCAAATTGC
ATTTAAATGTACATGGAACCAACGAGCTACAGAAAAATCTACAATATTAC
ATTGATTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023863-exon-sc0000463-1491911889:144791..147064 | TCONS_00023863-exon-sc0000463-1491911889:144791..147064 | Clytia hemisphaerica | exon |
| TCONS_00023863-exon-sc0000463-1510915933:144791..147064 | TCONS_00023863-exon-sc0000463-1510915933:144791..147064 | Clytia hemisphaerica | exon |
| TCONS_00023863-exon-sc0000463-1575043694:144791..147064 | TCONS_00023863-exon-sc0000463-1575043694:144791..147064 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000463 | supercontig | sc0000463:144791..147064 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013830 | SGNH_hydro |
Blast
The following BLAST results are available for this feature:
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