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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023868 ID=TCONS_00023868|Name=TCONS_00023868|organism=Clytia hemisphaerica|type=transcript|length=1866bp
GGGCAAGTCTGCAAATTGAACAAAGGAGGAGTTATGGAACGATCTCCTTG
CCTTGCGCAACACTCCTCTTACTGTCTTAACAACATTACAAGTGATTTGC
CTTTGCAGGGTGCAGGTTACAAAAACGGTTGGCAGAAGATTTCGTGACTG
GGCCACTAAAATCAGGCAATATGGTGTTTGAGGGGCTTGTTGGTTATTAT
GATTACATCTTGCAAACAGGCGATGTGCGAACAGCAACAATGCCATTTAT
CCAATCACCAAAATATGTTGTCTGTGCTGTCATTCTGTATTTGCTGATGG
TTATTTTTGGTCCCAGAATCATGGAAAAACGCCAACCGTTTCAACTACGC
AATGTACTCATTGGATACAACTGTTTCTCTGTTGTATTCTCAGTTTGGAT
GATGTGGGAGttttttgcTTGCTCCGTGCTAAATCCAAATTTCAATCTGT
TATGTCAAGATGTTATCCAGGCTGATACTTCTCCAATGACCATGAGGCTT
GTCAATGTGCATTGGTGGTATTTCTTCTCTAAAGTCATTGAATTTTTGGA
TACgttatTCTTTGTCCTTCGCAAAAAGAACAAGCAAATTAGTTTCTTAC
ATGTTTATCACCATGGGTCTATGTTAATATTACAATGGAGTCTTGTAAAA
TATGTTCCAGGAGGAGTTTCTTACTTTGGTCCCATGTTGAACTGCTTCAT
CCATACTTTAATGTACGCTTATTACATGTTATCTGCATTCGGCCCTCACA
TGCAAAAATATTTGTGGTGGAAGAAATACCTAACCAGAATGCAAATGTAC
CAATTCGTTCTGATTTTTTTACACGTGTCAAACGCCATGACGCACAAGTA
TTCACCCAACGCAATCcctgttaatgttttcttttggCTCCATTGGTTCT
ACATGATTTCACTTTTCTGGCTTTTCCAACATTTTTACCAAAATGCCTAC
CGTGCAAAGAAATTAGAAgaatcttcaaaatcaaaagccGAATAGATAAC
ACTGTCTGGTCTGTAAAAAGTCTCAGCTGTAATGCACTTTCCTCAACAAA
GATTCAGGGAATTACAAAAGATTTTTGTCTCAGAAAAAGGTGAATGGATT
TTCACTTCCATggactgaaaaattgaaagtttattATGCAAAAAGCAAGC
AAACGCTAAGAGTTAGTTTTTACATATTTACGCAACAACgaaacaacaaa
aaactttgAGAGATGTAGATATTTGAATTCgtagaagaaatttttttttT
CATAAGTTCCTATGACCCGTTTTTATACCATGCAATTATTTTTTATTTTG
GATTTTTTTTCGTTTTTTAAACCTCCTCTATCAAATGTCATCACTAGCCG
GGTCAAGGGGTTTCCTTTGGGACCACGTCATCACATTTTTATCTCATTCC
CTTTCAACCAATACTTTTGGTGACTTGTATTGGTATTATGATGTCTGTAT
TTTAGGGGAGGTATAAGTAATTCTTGATAATAATAAATATTTTAAAGGTT
TTGTTTTTAAATACGAGTGATATTGTTTGCTTACTCATCATTTTTGATTT
AAAAGCTTTTTCACGTTGAATTGACATGGATGTGGAGCAAGACTTGTCAG
AAAGAGGGGCAGAAAAACATTTTTTACTTAAATCAGCATAACATAACAAT
AGGGAGACACCGTCCTGATACGAAGTATGCgtctgatatgaaacgggaac
actcatgtaaaaacaaaacctttaatgatGATTTTTAcattacgtttttt
gattatttAGATGTTTGCTTAAATTGTAGCTGTAATTATTTCAATATCGT
GTAGATAGAATGAAAATTAGCAATTATATCACAGAAAGAAAGATTGCATT
ACATTTTATCATTGTG Run BLAST on NCBI transcript from alignment at sc0000464:928..5922+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023868 ID=TCONS_00023868|Name=TCONS_00023868|organism=Clytia hemisphaerica|type=transcript|length=4995bp|location=Sequence derived from alignment at sc0000464:928..5922+ (Clytia hemisphaerica)
GGGCAAGTCTGCAAATTGAACAAAGGAGGAGTTATGGAACGATCTCCTTG
CCTTGCGCAACACTCCTCTTACTGTCTTAACAACATTACAAGTGATTTGC
CTTTGCAGGGTGCAGGTTACAAAAACGGTTGGCAGAAGATTTCGTGACTG
GGCCACTGtaagttatttttatttaaacttGCAATTTTCACGTGCAGTTG
ACAGtgtgtttgtttgcttttattgtttaaaatagATCCGCTCTATTCAA
AGTTTTAGAAGGACTTCCTGGGACCTAGCTAGTCTTTCCCTTAGCATTCT
TTGGTAAACAACTCGAGCTACTTTACAGAGTGTTTTTGATTTCATTGCCT
AAGTTAGAGGCTTCAAAATAGGTCAAGGATCTTTGAATATTCAGGCTTTT
TGGTCTGAAATTGGGTGAAAAGTTCTGTATTATATGCTGgctgaaaagtt
tgatttcccAACTTGCAGCTCTACCCATATCTCAGCACTCAAAAAGACCA
GTTTGGCAGCTACATGGTTTCTCATGGTTTATCGGGAAACCTGGATTTAA
CATATTTTGTCTTCtttaaagtcagaaaaacttggaaaacataAGCTCCA
ATTCCATTTAAATCTGAAAAAGGAAATCTGAAATCTTAGCCCCATATTAC
TGGGGGAATTTTTTCCAAAGGACTGGAAAACAGAGGATGAAACCTTTTct
tgaaactgaaaaattggggaaactttttttaataattgaaaatgtgtgag
acatatttgtttgaaaattgtgtGGTACTGTAGTGACTGTATGAAACTCA
TgctgagagttggcacctctgcTTTATCACAAATTTATGAATTACATATA
TGTATATTGGAGGCTCCCTCAGCGTTAACTCTGAGCACAATATCACACGA
TATTTGGTcttcaaaaacagaaaaaaacttaGATAATGACGCAATCCATT
GAAAAAGTCCGAATTAGGCATCGcagctcaaaaatctttcaaatacgATC
AtgttttgacctctgatcaagcaatcacaaagaaaaaatttcctaaTTAC
GTAATCCAGAAAACCACTTAGGGGAGCCTCATATCTGCTCATATTGGGAC
CTTGAACACAACActcatcagaaaaatttaaaactgcTTTGTCAGATTGA
GAGGCCTGTCTGCTTTGTAAAACAGCAAAAACAACACTTTTAAGatttaa
ttttttactttttattatttAACCTATTTTGGTCCTATCATTTGGCCAAA
AAAAGTCCTACTCTAATACACAGTTTACACAAAATTGACCAAGAGCCTTG
CTCTAGTCAAcgaaatttttccatttttttttctttcttttttttatcat
tttctgatATAAATTTTTTCCTTAGATTTTAACTCTTTGTTAACATTTAC
TGTTccatattttgtattttcattTTCTTGGAACCAATATTTTGATCTTT
AATCATATTTTTTTCTTGCAAAGTGTACATAGCACGAGAGCCACCAATGG
TTAAAAACTTATGTACATAGTTTCTTTCTTTATGttattcaatttgaaat
aaacctaacctaacctaacctaacctaatgaacaaatcaacaaaaattga
GGTTAATCTTGTGTGGAAAAAAATCGTTCCATACAATGTAACCTGATCCC
TTTCAGTAGGATTATACTACAACAAAATGTATTATTGACAGATTTGTGGT
TTCCTTCAGTTTGTAAAAGCAAAGACAAATAAAACAAGATTTTAACAACC
ACAAGAGCTGTCAGAAGGGCTGAAGTACTGTTAAAGCATTTTATTAAAAA
CTAAACTGCCTTGCTTAAGGATAGAGAACTTTCAGTTTGTATATAGTTTT
GTCAACCAAAGCTGTTGAGAAATTCCACTTGATTCTGATACtgtaatgaa
aattatttttcttatctcTAGAAAATCAGGCAATATGGTGTTTGAGGGGC
TTGTTGGTTATTATGATTACATCTTGCAAACAGGCGATGTGCGAACAGCA
ACAATGCCATTTATCCAATCACCAAAATATGTTGTCTGTGCTGTCATTCT
GTATTTGCTGATGGTTATTTTTGGTCCCAGAATCATGGAAAAACGCCAAC
CGTTTCAACTACGCAATGTACTCATTGGATACAACTGTTTCTCTGTTGTA
TTCTCAGTTTGGATGATGTGGGAGGtaataatattttctttatggatcat
atttttctgaaaaatgagagcaccaatttcaatttctaatCTCCAAAATA
TCAATctgtttttatttcagttttttgcTTGCTCCGTGCTAAATCCAAAT
TTCAATCTGTTATGTCAAGATGTTATCCAGGCTGATACTTCTCCAATGAC
CATGAGGGTAACTAGATTTAATTTCTATTAATTTAagaatttattaattt
ttaagaccTTTTTTGAATTGGTTATCAAGGTTGTCTTTATTAATTTCACA
ACCTATGCTATATATTTTGTTCCTATTTTGCAAATTCCACATATATATGA
GGCTttacaaataatttttaatttacattcatcTGAAAAAGCTTTGAAAT
TGCTTCAGTGGCTCTTTGTAGGAGAATTTGTAAAGACTTCGAAGCACTGC
CATTTACCTTTCATTCAGTATTTTGCTATATAAATTGAAACACGCTTTCT
TATATCAGCTTGTCAATGTGCATTGGTGGTATTTCTTCTCTAAAGTCATT
GAATTTTTGGATACggtaagttttttttacttgctattaaaatttcaacc
taCGGAAGGTTTACATTTCGCAATGCTGAAACATTTTGATTGTGCTAGAA
ACGCATATGGTTTACTGATAGACTCTTTTTAGTTTATTTGATGGAGTAGG
TTACTATATGAAAGAAATGCTCTAatacttttgttttatttttttagtta
tTCTTTGTCCTTCGCAAAAAGAACAAGCAAATTAGTTTCTTACATGTTTA
TCACCATGGGTCTATGTTAATATTACAATGGAGTCTTGTAAAATATGTTC
CAGGAGGAGTTTGTAAGTACACCATCCTATTATTTTCTTCCTATTATATC
TCCAGagatatttttgaatttgataacTGATTAAAGAGTAGTTCTATTTT
TATAACCTCCACGTTAATTAGTTTGCCAAGGCAACAGATAACTGCAACTA
ACATTGTAATTATCATCAATTTAGTCTTAAATAGGAACTTTTTTCTGAGC
TGCAGTAATCTGCTTTTGAATGATTTTATCCATGTCTAATTGATGTTCAA
CTTGAAATTTCGGTTTATCTTGTTATTTCCTTCTTCTAGCTTACTTTGGT
CCCATGTTGAACTGCTTCATCCATACTTTAATGTACGCTTATTACATGTT
ATCTGCATTCGGCCCTCACATGCAAAAATATTTGTGGTGGAAGAAATACC
TAACCAGAATGCAAATGGTAAGATTGTTTTCCTTTTGCATGAAATTTATA
CTAAAACTGAAAAGGGTAAAAAGTTGTGCTGTCGCACTGAGCATAAGTAT
GTAATAGCTGGTTTGTTAACCAGGTAAACTATCTATTATTAGCAATCCAC
ATTCATGAATCACTTAAGTTATATATCTTATCTGGGTTTGTAACAATGAA
AAATGCACGCGTCTCACATACAAACACACTTTTTCATCACAATATCATCA
TTGCACACACCCGTTCTTCACCAAAGATTTGCTTTTCAGCTGAAATAAAA
TTTGCGCGAAAATCTGGGCGAAacattttttggtcaattttttcaaatga
agAAGGGATGTGCAATGATATTGGAAAGTCCCAGCCGAAAAGAAGGAAAG
CAGCAAGACATCAAGGAAATTTTAGTCAGGTGCGTATTCTTTTTAAGCTG
GGACTTTCCATTTTTTCTCTTACACTTGATGTGTATTTTCTCAATGTCTT
AGAACTgcttctctttttctttctaGTACCAATTCGTTCTGATTTTTTTA
CACGTGTCAAACGCCATGACGCACAAGTATTCACCCAACGCAATCcctgt
taatgttttcttttggCTCCATTGGTTCTACATGATTTCACTTTTCTGGC
TTTTCCAACATTTTTACCAAAATGCCTACCGTGCAAAGAAATTAGAAgaa
tcttcaaaatcaaaagccGAATAGATAACACTGTCTGGTCTGTAAAAAGT
CTCAGCTGTAATGCACTTTCCTCAACAAAGATTCAGGGAATTACAAAAGA
TTTTTGTCTCAGAAAAAGGTGAATGGATTTTCACTTCCATggactgaaaa
attgaaagtttattATGCAAAAAGCAAGCAAACGCTAAGAGTTAGTTTTT
ACATATTTACGCAACAACgaaacaacaaaaaactttgAGAGATGTAGATA
TTTGAATTCgtagaagaaatttttttttTCATAAGTTCCTATGACCCGTT
TTTATACCATGCAATTATTTTTTATTTTGGATTTTTTTTCGTTTTTTAAA
CCTCCTCTATCAAATGTCATCACTAGCCGGGTCAAGGGGTTTCCTTTGGG
ACCACGTCATCACATTTTTATCTCATTCCCTTTCAACCAATACTTTTGGT
GACTTGTATTGGTATTATGATGTCTGTATTTTAGGGGAGGTATAAGTAAT
TCTTGATAATAATAAATATTTTAAAGGTTTTGTTTTTAAATACGAGTGAT
ATTGTTTGCTTACTCATCATTTTTGATTTAAAAGCTTTTTCACGTTGAAT
TGACATGGATGTGGAGCAAGACTTGTCAGAAAGAGGGGCAGAAAAACATT
TTTTACTTAAATCAGCATAACATAACAATAGGGAGACACCGTCCTGATAC
GAAGTATGCgtctgatatgaaacgggaacactcatgtaaaaacaaaacct
ttaatgatGATTTTTAcattacgttttttgattatttAGATGTTTGCTTA
AATTGTAGCTGTAATTATTTCAATATCGTGTAGATAGAATGAAAATTAGC
AATTATATCACAGAAAGAAAGATTGCATTACATTTTATCATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023868-exon-sc0000464-1491911889:928..1084 | TCONS_00023868-exon-sc0000464-1491911889:928..1084 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1510915933:928..1084 | TCONS_00023868-exon-sc0000464-1510915933:928..1084 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1575043694:928..1084 | TCONS_00023868-exon-sc0000464-1575043694:928..1084 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1491911889:2849..3101 | TCONS_00023868-exon-sc0000464-1491911889:2849..3101 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1510915933:2849..3101 | TCONS_00023868-exon-sc0000464-1510915933:2849..3101 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1575043694:2849..3101 | TCONS_00023868-exon-sc0000464-1575043694:2849..3101 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1491911889:3198..3284 | TCONS_00023868-exon-sc0000464-1491911889:3198..3284 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1510915933:3198..3284 | TCONS_00023868-exon-sc0000464-1510915933:3198..3284 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1575043694:3198..3284 | TCONS_00023868-exon-sc0000464-1575043694:3198..3284 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1491911889:3586..3642 | TCONS_00023868-exon-sc0000464-1491911889:3586..3642 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1510915933:3586..3642 | TCONS_00023868-exon-sc0000464-1510915933:3586..3642 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1575043694:3586..3642 | TCONS_00023868-exon-sc0000464-1575043694:3586..3642 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1491911889:3825..3939 | TCONS_00023868-exon-sc0000464-1491911889:3825..3939 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1510915933:3825..3939 | TCONS_00023868-exon-sc0000464-1510915933:3825..3939 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1575043694:3825..3939 | TCONS_00023868-exon-sc0000464-1575043694:3825..3939 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1491911889:4217..4344 | TCONS_00023868-exon-sc0000464-1491911889:4217..4344 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1510915933:4217..4344 | TCONS_00023868-exon-sc0000464-1510915933:4217..4344 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1575043694:4217..4344 | TCONS_00023868-exon-sc0000464-1575043694:4217..4344 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1491911889:4854..5922 | TCONS_00023868-exon-sc0000464-1491911889:4854..5922 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1510915933:4854..5922 | TCONS_00023868-exon-sc0000464-1510915933:4854..5922 | Clytia hemisphaerica | exon |
| TCONS_00023868-exon-sc0000464-1575043694:4854..5922 | TCONS_00023868-exon-sc0000464-1575043694:4854..5922 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:928..5922 + |
Blast
BLAST of TCONS_00023868 vs. Swiss-Prot (Human)
Match: ELOV4 (Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 7.796e-58 Identity = 116/280 (41.43%), Postives = 169/280 (60.36%), Query Frame = 3
Query: 189 VGYYDYILQTGDVRTATMPFIQSPKYVVCAVILYLLMVIFGPRIMEKRQPFQLRNVLIGYNCFSVVFSVWMMWEFFACSVLNPNFNLLCQDVIQADTSPMTMRLVNVHWWYFFSKVIEFLDTLFFVLRKKNKQISFLHVYHHGSMLILQWSLVKYVPGGVSYFGPMLNCFIHTLMYAYYMLSAFGPHMQKYLWWKKYLTRMQMYQFVLIFLHVSNAMTHKYSPNAIPVNVFFWLHW---FYMISLFWLFQHFYQNAYRXXXXXXXXXXXXXXITLSGL*K 1019
V +Y + D R P +QSP + LYLL V GP+ M+ R+PFQ+R VLI YN V+ ++++ E F S N ++ +CQ V ++ + +R+ WWYF SK +E+LDT+FF+LRKKN Q+SFLHVYHH +M L W +K+V GG ++FG LN FIH +MY+YY L+AFGP +QKYLWWK+YLT +Q+ QF + H + ++ Y+ P W+HW Y IS +LF +FY Y+ K ++ K+ I+ +G+ K
Sbjct: 23 VEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFVWLGPKWMKDREPFQMRLVLIIYNFGMVLLNLFIFRELFMGS-YNAGYSYICQSVDYSN-NVHEVRIAAALWWYFVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHVTIGHTALSL---YTDCPFPK----WMHWALIAYAISFIFLFLNFYIRTYKEPKKPKAGKTAMNGISANGVSK 293
The following BLAST results are available for this feature:
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