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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023879 ID=TCONS_00023879|Name=TCONS_00023879|organism=Clytia hemisphaerica|type=transcript|length=694bp
AAAAAGAAATGGATTTTAATGATAGTATACTTTTTTACACCAGCTTTCCA
AGTGCTGTCAAAGAACCTGAGAAGTGGCATAAATGGGTAAGGGCAATGAG
AAGAGAAGGCTGGGAACCAACACCACATTCAAGGATTTGTTCCGACCATT
TTAAGGAAGAATTCATAAGAAGGCCTGAAAACTTGAACGACAAGGTCATG
TTGAAATTTAATGCTGTACCAACAAGATTCAAGGCATTCCCTGATCATCT
AAAAAAACAAGAGATTCCAAAGGAGAGGAACAGACCAAAAATTAGAGAGC
CATTAAAGCCTATAAACACTCCAGGCAAAAACATTCAGACAACAAAAAGT
GAAGAAGATCCTTTGGAAAAGATGAGGAGGGAGCTTGAAAAGAAGTCCAG
TGAAATTAAAGAATTAAAGAAGAAACTAAATACACAACAGCAAAAGAGAA
GGTGTCAGAAAAAGATCAAAAGTATGAAAGATGTGGTAGCTGACCTAAGA
AAGCAGAATTTGGCCAGTGATCAGTGCATTCAATCCCTGGAGAAGAATTT
CAAAGGAGTTCCATTAGAAATTATGAAAAGGATGAAAGCCAttgaaaaca
agcaacatgctgaatggacctacctgatgatgaaagttagttagcaatgc
gaaaagaaaaatgaaaaaaatcagtcagaaaatatagcatttag Run BLAST on NCBI protein sequence of TCONS_00023879-protein >TCONS_00023879-protein ID=TCONS_00023879-protein|Name=TCONS_00023879-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
KEMDFNDSILFYTSFPSAVKEPEKWHKWVRAMRREGWEPTPHSRICSDHF
KEEFIRRPENLNDKVMLKFNAVPTRFKAFPDHLKKQEIPKERNRPKIREP
LKPINTPGKNIQTTKSEEDPLEKMRRELEKKSSEIKELKKKLNTQQQKRR
CQKKIKSMKDVVADLRKQNLASDQCIQSLEKNFKGVPLEIMKRMKAIENK
QHAEWTYLMMKVS Run BLAST on NCBI transcript from alignment at sc0000464:79452..80336- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023879 ID=TCONS_00023879|Name=TCONS_00023879|organism=Clytia hemisphaerica|type=transcript|length=885bp|location=Sequence derived from alignment at sc0000464:79452..80336- (Clytia hemisphaerica)
AAAAAGAAATGGATTTTAATGATAGTATACTTTTTTACACCAGCTTTCCA
AGTGCTGTCAAAGAACCTGAGAAGTGGCATAAATGGGTAAGGGCAATGAG
AAGAGAAGGCTGGGAACCAACACCACATTCAAGGATTTGTTCCGACCATT
TTAAGGAAGAATTCATAAGAAGGCCTGAAAACTTGAACGACAAGGTCATG
TTGAAATTTAATGCTGTACCAACAAGATTCAAGGCATTCCCTGATCATCT
AAAAAAACAAGAGGTATTTTAATAAATTCAGAAAAAATTCATTATCCATA
ACAAAAATATCACCTCACTTTACCTATTATTACAGCATTCCAAGGCAAGG
CCCAGAAATGTCCCTTAAAAATGAAATTCAGCCTTTAAATTCCATAGTAT
GTAGGGTAGTTCAGTAAGCTTAGTCTCTAGTATGTTTGAATTTTATATTC
TTAGATTCCAAAGGAGAGGAACAGACCAAAAATTAGAGAGCCATTAAAGC
CTATAAACACTCCAGGCAAAAACATTCAGACAACAAAAAGTGAAGAAGAT
CCTTTGGAAAAGATGAGGAGGGAGCTTGAAAAGAAGTCCAGTGAAATTAA
AGAATTAAAGAAGAAACTAAATACACAACAGCAAAAGAGAAGGTGTCAGA
AAAAGATCAAAAGTATGAAAGATGTGGTAGCTGACCTAAGAAAGCAGAAT
TTGGCCAGTGATCAGTGCATTCAATCCCTGGAGAAGAATTTCAAAGGAGT
TCCATTAGAAATTATGAAAAGGATGAAAGCCATTGAAAACAAGCAACATG
CTGAATGGACCTACCTGATGATGAAAGTTAGTTAGCAATGCGAAAAGAAA
AATGAAAAAAATCAGTCAGAAAATATAGCATTTAG Coding sequence (CDS) from alignment at sc0000464:79452..80336- >TCONS_00023879 ID=TCONS_00023879|Name=TCONS_00023879|organism=Clytia hemisphaerica|type=CDS|length=1284bp|location=Sequence derived from alignment at sc0000464:79452..80336- (Clytia hemisphaerica)
ATTCCAAAGGAGAGGAACAGACCAAAAATTAGAGAGCCATTAAAGCCTAT
AAACACTCCAGGCAAAAACATTCAGACAACAAAAAGTGAAGAAGATCCTT
TGGAAAAGATGAGGAGGGAGCTTGAAAAGAAGTCCAGTGAAATTAAAGAA
TTAAAGAAGAAACTAAATACACAACAGCAAAAGAGAAGGTGTCAGAAAAA
GATCAAAAGTATGAAAGATGTGGTAGCTGACCTAAGAAAGCAGAATTTGG
CCAGTGATCAGTGCATTCAATCCCTGGAGAAGAATTTCAAAGGAGTTCCA
TTAGAAATTATGAAAAGGATGAAAGCCATTGAAAACAAGCAACATGCTGA
ATGGACCTACCTGATGATGAAAGTTAGTTAGAAAGAAATGGATTTTAATG
ATAGTATACTTTTTTACACCAGCTTTCCAAGTGCTGTCAAAGAACCTGAG
AAGTGGCATAAATGGGTAAGGGCAATGAGAAGAGAAGGCTGGGAACCAAC
ACCACATTCAAGGATTTGTTCCGACCATTTTAAGGAAGAATTCATAAGAA
GGCCTGAAAACTTGAACGACAAGGTCATGTTGAAATTTAATGCTGTACCA
ACAAGATTCAAGGCATTCCCTGATCATCTAAAAAAACAAGAGATTCCAAA
GGAGAGGAACAGACCAAAAATTAGAGAGCCATTAAAGCCTATAAACACTC
CAGGCAAAAACATTCAGACAACAAAAAGTGAAGAAGATCCTTTGGAAAAG
ATGAGGAGGGAGCTTGAAAAGAAGTCCAGTGAAATTAAAGAATTAAAGAA
GAAACTAAATACACAACAGCAAAAGAGAAGGTGTCAGAAAAAGATCAAAA
GTATGAAAGATGTGGTAGCTGACCTAAGAAAGCAGAATTTGGCCAGTGAT
CAGTGCATTCAATCCCTGGAGAAGAATTTCAAAGGAGTTCCATTAGAAAT
TATGAAAAGGATGAAAGCCATTGAAAACAAGCAACATGCTGAATGGACCT
ACCTGATGATGAAAGTTAGTTAGAAAGAAATGGATTTTAATGATAGTATA
CTTTTTTACACCAGCTTTCCAAGTGCTGTCAAAGAACCTGAGAAGTGGCA
TAAATGGGTAAGGGCAATGAGAAGAGAAGGCTGGGAACCAACACCACATT
CAAGGATTTGTTCCGACCATTTTAAGGAAGAATTCATAAGAAGGCCTGAA
AACTTGAACGACAAGGTCATGTTGAAATTTAATGCTGTACCAACAAGATT
CAAGGCATTCCCTGATCATCTAAAAAAACAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023879-exon-sc0000464-1575043694:80074..80336 | TCONS_00023879-exon-sc0000464-1575043694:80074..80336 | Clytia hemisphaerica | exon |
| TCONS_00023879-exon-sc0000464-1575043694:79452..79882 | TCONS_00023879-exon-sc0000464-1575043694:79452..79882 | Clytia hemisphaerica | exon |
| TCONS_00023879-exon-sc0000464-1510915933:80074..80336 | TCONS_00023879-exon-sc0000464-1510915933:80074..80336 | Clytia hemisphaerica | exon |
| TCONS_00023879-exon-sc0000464-1510915933:79452..79882 | TCONS_00023879-exon-sc0000464-1510915933:79452..79882 | Clytia hemisphaerica | exon |
| TCONS_00023879-exon-sc0000464-1491911889:80074..80336 | TCONS_00023879-exon-sc0000464-1491911889:80074..80336 | Clytia hemisphaerica | exon |
| TCONS_00023879-exon-sc0000464-1491911889:79452..79882 | TCONS_00023879-exon-sc0000464-1491911889:79452..79882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:79452..80336 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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