TCONS_00023881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023881
Unique NameTCONS_00023881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023881 ID=TCONS_00023881|Name=TCONS_00023881|organism=Clytia hemisphaerica|type=transcript|length=1699bp
GTTTGTCTGGCGAAAGGACTACTTGGCTTCTCGAGTTAACTTTTTCTGac
aaacttcaaaacttttgttggaaaaaaatattttttctggacAAACGTTA
TATCAGAAGAACGAGGAAAGCTTCAGCTTTCAGAATATATAAGTGGTTTC
CTCTACTTTTGTTCCGGCGGTAAGCGCTGAGCCAAAGTTTGGAGGTATGt
gagtgatttttttctcttttcatattttcgaaaaaaaagttttgaacttt
ttttctttcttttttctgtgtttttttttgacgtAATGGAACGTTTCTCT
TGCTTTTGATTGGTGGGAAATCAAAAATGggggatgaaaacaaaaacaaa
cttttttctctGAAAGAGATGGAgagtctttttttcaaaaaggaattGCC
TGAGTGGTGGAATGTCAGCATAAATAAGATAAGTTATAGAGTTTTggaag
aaatatttatttttattgagaagaaTGATCTATTCCCTTCTTCCATTTTG
TTACCTCTATCCAATTTACTTGGCACTGATGCCACTCTATTTGTCAAGCA
TGCAGGCAATTTTAGagtcaaaattttaaatcacaTCAAGAAAAGTGCCG
ATTGTCTTGATCTTCTCGTGGAATGCTTGTATCCAACTTTGCAAGAAGAA
GGATTTATTGGTCAGGAGTGTAGTAAAATTGGTGACCCTACAGGATAACA
AAGGGAATGGGTTTGTATTTATACAGGTTTGTATTTATACAGGTTGACAC
AGACAAGATGAtgaaaatgtacttttttgttgtagataaaaagaaagaaa
gaaagaatttcTGGAATGTCTGCTAGAAAGCCTAGAAAGCTGAAGCCAAA
TCCAGATCTCAGATCTCAGTGGAGATTTGCTCGGACGGTTGTTGCAAGAT
GGGAAACTCCCGCCCATGGAGGCAGATACTGAGACAGAAACGGAAGATAA
AGGAGAGAGTCCAGAGGTAACTGAATAAATTCCGAATTACAGATTGCAAG
ATAAAGTTTGAGTTGAGGCAAGATAACGTCAAGATGAACCCTTTAAGTTT
GTAAACAGTTTTTTTGATGGCCTTGCAGTGTAAAATAGAATTGTAGGAGA
TTATAGAAATTCCACATATAATGCATTTAAATATTGATCTTGATCTTTAA
ATATCACCCATGGCAATCAATTCCTGAAACATTTGACATACCAAACGACG
AGGCCATACGTAACGACGAGGCCATACCAAACAATGATGCCATTCCGAAC
AATGATGCCATTCCGAACAATGATGCCATTCCTTACAACGATGCCATTCC
GAACAACGATGCCATTCCGAACAACGATGCTATTCCGAATAACGAGTCTA
CCAGTAGTAGTGACTATGAGTCCTCCAGTAGTGACTCGTCAAATGGTCAA
CATCAAAGTCTGGCCCAACAAGGTAGAAATCGTGGCCGTGGTGGACACCG
TGGTGGCGGCGGCAGAGGAGGGCGTGGTGACGGTGTCAACAACCCAACGC
GTCAACAGCGCCGTCGTGAGAATCGGCGTCTAAGGAATAGAATTGTAAAC
ATTGTGAACGCACATTGTGAGGTGCTAAGTCGTTACTGCTAAGTCGTTAC
TGTTGAAACGTGAACACTGtagattttgttgtttttcattgtttgcaGGT
TTTGTAGTTttgtagtttttttattttttctattttttagacAAGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00023881-protein

>TCONS_00023881-protein ID=TCONS_00023881-protein|Name=TCONS_00023881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MGDENKNKLFSLKEMESLFFKKELPEWWNVSINKISYRVLEEIFIFIEKN
DLFPSSILLPLSNLLGTDATLFVKHAGNFRVKILNHIKKSADCLDLLVEC
LYPTLQEEGFIGQECSKIGDPTG
Run BLAST on NCBI

transcript from alignment at sc0000464:114829..120369-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023881 ID=TCONS_00023881|Name=TCONS_00023881|organism=Clytia hemisphaerica|type=transcript|length=5541bp|location=Sequence derived from alignment at sc0000464:114829..120369- (Clytia hemisphaerica)
GTTTGTCTGGCGAAAGGACTACTTGGCTTCTCGAGTTAACTTTTTCTGAC
AAACTTCAAAACTTTTGTTGGAAAAAAATATTTTTTCTGGACAAACGTTA
TATCAGAAGAACGAGGAAAGCTTCAGCTTTCAGAATATATAAGTGGTTTC
CTCTACTTTTGTTCCGGCGGTAAGCGCTGAGCCAAAGTTTGGAGGTATGT
GAGTGATTTTTTTCTCTTTTCATATTTTCGAAAAAAAAGTTTTGAACTTT
TTTTCTTTCTTTTTTCTGTGTTTTTTTTTGACGTAATGGAACGTTTCTCT
TGCTTTTGATTGGTGGGAAATCAAAAATGGGGGATGAAAACAAAAACAAA
CTTTTTTCTCTGAAAGAGATGGAGAGTCTTTTTTTCAAAAAGGAATTGCC
TGAGTGGTGGAATGTCAGCATAAATAAGATAAGTTATAGAGTTTTGGAAG
AAATATTTATTTTTATTGAGAAGAATGATCTATTCCCTTCTTCCATTTTG
TTACCTCTATCCAATTTACTTGGCACTGATGCCACTCTATTTGTCAAGCA
TGCAGGCAATTTTAGAGTCAAAATTTTAAATCACATCAAGAAAAGTGCCG
ATTGTCTTGATCTTCTCGTGGAATGCTTGTATCCAACTTTGCAAGAAGAA
GGATTTATTGGTCAGGAGTGTAGTAAAGTAGGTTTTTTTGCAAGGAATTG
AACAGCCAAAGCCTCTTTGACTGTTTTTCTGAATCCGGCAGGAAAATTAA
ACTGACTAATGCAATGATTCTTGAGATAAGGTCACACTGTTATTCGGTGA
GGATTTCGTGGGAAAAATTCTATCAACTATTTAACTTGCTCATGCCTAGC
GACACTTCTTTAAGATGCTTCCAAAATGCGTTAGATGTCCTGGTCAGAAT
GAAGCAAAAATTGGTGATATCCCACAAAAAAAATGCTGAAGGACGTGAAA
AATATCTTAGTTTTTGCAGCGATACGTTTTCTTTTCCTACGCCGAACCTT
AAAAAACAAAAGGCACAGCTTAAAGAAAAGTGTTTCTCTGTGTGTGCTAA
TAATGTCAGAGAATATGACATACAACCTGTCCTAAATCAAATTGCTGAGC
TGGAAAATCAATTGCTCGTTTTGATGGAATGCTTAAAAGAAGAATCCATT
GAAAAAACAAATATAAGAAGCAGGTCAGGTCTTTGGAAGATGAGCATAAA
AAACTGTCGTCAGATCTTCAAAATGTATTATTTAAGGTTGGTAGATTTAC
TCCCAGGAAAGTGGGTAAAAGGGAACATCGAGCTGATTGTAGAATTTCAG
ATCTCGAAGAGGTAGTTTGCGAAAAAAAGTCACTAATTTCAGGCCTTGAA
AAAGAAAATGAAGATCTGATAAAGAAAAATGAAGATTTGAACAAACAATT
GTCATCTGCTTTGCTACATAACAATAGATGTAGAAAAAGAATTTACGACT
TAAAACAAAAAAAGGAAAAAGGAATTCCTGAACTTGCTTCAGAATCAGAA
AATTGTTTTCAATCTCGCATTCGAGACCTGAATGCTGAAATAGCCTATTT
ACAGAATGAAAAAATTGAGTTACAATCTCAAATTGATAGTTTTGTTGAAA
ACAATGTAATAAATGTCTTTGAGAAGGGTGTCTACACAGATAACGTTCGA
ATGGTCTATGAGGACCTCATGTGTCTTGGCATAGGTTCCCGCAATGTGGA
AAAAGCAATAAGGACCGTGCTAAAAAAGCTAGCAAATCTTGAAGTAGGTA
GGCTCCCAAAAGCTACCTTTGCAAAATACATGCTTTTAGAATCCCGTGCA
TTAGCCCATATTCAACTTCTATCTGAATTGACAGGGGACAGCGATGATGG
TAAGATTTCAGACCAAAAAACATTAATGTCTGATGGCACTTCAAAGAAAG
GCCATTCATATGCAACTTATGACATTCAAACTAATTCTGGAAAATGCTTG
GTAGCGGGTGTAAGACCAACTAGTAATGGTGAAGCTGAAACACAGCTTCA
CGTCTTGAGAGAAATTTTTGAGGATGTTTCAAGCTTTTGTCCCAAGAAGG
ATGAAGACTTTTCAGCTAGGCTATTTGCATCTATTAAAATTTTGTTGAGT
GACCGTTGTGTCACTCAAAAGAGATTCAACAGACTTTTTATTGAATACAG
AAATAACCTTATTCCCCAGATCATGGAAAATTGGGACAGCTTATCTGAGG
ATGAGCAAAACGAATTTAAGAAGGTCAACGAGTTCTTTTGTGGTTTGCAC
GTTATAGTTGGACTTGCTGACCAAGCTGATGAATGTTTGAAAATACATGA
AGGTATGCTCTACAAAGAGAATAAAGTTGGCTCTTTGGCAACTAAAAATG
GTTTCCCTGGGGGTGAGTCAGGAACAACACGTCTCATTCGTACAGTCTGC
AAAGCTGTGTCTGATAGAGGTTGTGAAAAAAGTGGCCGCATGGTCACTTT
TGCAACCTTTCTTGAAGGAAATCATGAGCTTGTAAATAAACATATTTTCC
CATTTTTGGGAAACCGATTCAACATACTGTTTTTAAATGCAGCTGGGGTA
TTCTTCTTGTACCATCATCTTCTTGAATTTTTTGGTAATCTAGATGATTC
CAACAGACTTTTGAATGCAGTCAATGATGATCTAATTGTATTAGCCTACA
GAGTAAGTTTTAAAGCACTTGGTCTAATTCATAAAAAAGTAACCGGTCCT
TTGTGGCGCAAAATGGTACAAGTAGAATCTAACTTGCAAATGAATGAACA
TTATAAACTAATGGTCCAGAAATTTGAGCAATGGAGTAACAATCCATCTC
CTTTTATATCCGGTGGTGACTCTCTCTTTCCAAACTTAGTACACCAAGAC
GAGGTGTATGAAAAACTGGTTGCCCCTTTTGACCATGATGAATCCATGGT
CAAACCTCTATTGGAGATTATATTCAGTAGTTTTGTTAATCTAAGTAAAC
GAATGTTATATGACCACCTAGAAGGTGTTCATGCCAATCCATCTGAGTCA
CTTTTAAATGAGGCGAAAACAGTCCCTACAACAAACGTGAGTGCCGAAAG
AGATTTTGGCATGTTAGATTGTTTGATGAAGATGAAACCAAAAGCGCTTG
ACTTAGCCCTAGAAGGGATTATTATGTTTCGTGTAAACAAGACACAGGAA
TGGAGAGATAGGCTTCCCCCTGCTCGACTGAAGGAAGTTATTAAAATAGC
GAGGGAAAGTAAAAAACGACACACTGAAATGTATGTCAAACGAAAGTCTG
ATATTTTCAACAGCCGCTTTGAGAAGATGCAAAATGCAGAAATGGAAAAA
CGAAGAAAAGCTAACAATCTTTTGGACCTGAAAGAACGTCTAACTTTAGA
CATACAGCAGTTTGGGTTGTGGGTAGATGAGTCTCAAATTGATGAAGGTT
TAAGCAAACTTGACGGTGTTAAATCAAAACGACAAGCTTTGAAAATCCAA
CTTGGTTTCAGAAATAAGGTTCTTGAAACTAAATGTGAGCGTTCTTTTTT
CCATCTTTCAACCCAAGGTGTGAATAAGCCAATTGACGAGTTGAAAGCTA
ACTTATTGAAAGTTATAGGATGGGCAGAACTAGAGGTTAGTGCTTCTGGT
GAACCCAAGATAGATTTTTCAATCCCTGTATCTATCTCACACGGTGTCGT
TGACAGCCAAAAAAAATCATATGAAGATAAGGCTCATGAAACTTCTGAGA
AGCTCTCAGGGAAAAAAAACACAAGAAAAAGGGGAAAAAAGGACAAAATC
TCAAGCTAAAAGTAAAGCTTCCACCAAAGCCTCAAAGAAAGTTAAGAAAA
ACATTGTCAACTCTTCTAGTTCGAAATCTCCTGTCATTTCAAACCCGCAC
GATCGTATTGTATTATTTTTTTGTGAGAGGGACACTAGAGAAGACTGGTA
CAAAGGGGTGGTAATAAGAGAAGAAGGGAAAAATAAGAAACCTAAATTTC
TTTAGCAGTTCTATCAAGATGACGAAGATGGAAATGACTTGATATTTTCA
ACTCTATATGAGGTGTTGACAGTTTAGATCCTCAAAACCCAAATTTTTTC
ATATATTTTCCTTCTTCAGAAGGGGAAGAAGTAGCTGAAGAGCTAAAATA
CCACTTGGAACCCCTTTTAGAGTGGTATTTGGAAGGTTGGGTGCGCTTCA
GAGATTGCTGTGCTGTCTGAATAAAAAGTAAAACTGAATCACAGAGCAAA
CCACTTAAAAACTGTGGAGTTTGCCACAGCAACCAACTTGAACTTATTGC
AACTTTTTGCTAAAAGTGATTTCCCATCTTTAAAATGTGGAGTTTGCCTA
GTTTCCGAGGGGGCAAACCACTAGGACCAGCAAAAATATGTGGATGTGCT
GGACTGACAAGTGCGAGGAGGGGCACTTGTCTTGTGGGTTTATCAAAATT
TTATTATTTGGGTCTCAAAACACTGTCTTAGAGAAATGAAGAGCTTCCTT
GCTTAGTTTAAAAGTTACACTGCTGGCCAACCACAATTATTTTTAGTTCC
ATATTTTTTTCTCGTTTAGATTGGTGACCCTACAGGATAACAAAGGGAAT
GGGTTTGTATTTATACAGGTTTGTATTTATACAGGTTGACACAGACAAGA
TGATGAAAATGTACTTTTTTGTTGTAGATAAAAAGAAAGAAAGAAAGAAT
TTCTGGAATGTCTGCTAGAAAGCCTAGAAAGCTGAAGCCAAATCCAGATC
TCAGATCTCAGTGGAGATTTGCTCGGACGGTTGTTGCAAGATGGGAAACT
CCCGCCCATGGAGGCAGATACTGAGACAGAAACGGAAGATAAAGGAGAGA
GTCCAGAGGTAACTGAATAAATTCCGAATTACAGATTGCAAGATAAAGTT
TGAGTTGAGGCAAGATAACGTCAAGATGAACCCTTTAAGTTTGTAAACAG
TTTTTTTGATGGCCTTGCAGTGTAAAATAGAATTGTAGGAGATTATAGAA
ATTCCACATATAATGCATTTAAATATTGATCTTGATCTTTAAATATCACC
CATGGCAATCAATTCCTGAAACATTTGACATACCAAACGACGAGGCCATA
CGTAACGACGAGGCCATACCAAACAATGATGCCATTCCGAACAATGATGC
CATTCCGAACAATGATGCCATTCCTTACAACGATGCCATTCCGAACAACG
ATGCCATTCCGAACAACGATGCTATTCCGAATAACGAGTCTACCAGTAGT
AGTGACTATGAGTCCTCCAGTAGTGACTCGTCAAATGGTCAACATCAAAG
TCTGGCCCAACAAGGTAGAAATCGTGGCCGTGGTGGACACCGTGGTGGCG
GCGGCAGAGGAGGGCGTGGTGACGGTGTCAACAACCCAACGCGTCAACAG
CGCCGTCGTGAGAATCGGCGTCTAAGGAATAGAATTGTAAACATTGTGAA
CGCACATTGTGAGGTGCTAAGTCGTTACTGCTAAGTCGTTACTGTTGAAA
CGTGAACACTGTAGATTTTGTTGTTTTTCATTGTTTGCAGGTTTTGTAGT
TTTGTAGTTTTTTTATTTTTTCTATTTTTTAGACAAGAAAG

Coding sequence (CDS) from alignment at sc0000464:114829..120369-

>TCONS_00023881 ID=TCONS_00023881|Name=TCONS_00023881|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000464:114829..120369- (Clytia hemisphaerica)
ATTGGTGACCCTACAGGATAAATGGGGGATGAAAACAAAAACAAACTTTT
TTCTCTGAAAGAGATGGAGAGTCTTTTTTTCAAAAAGGAATTGCCTGAGT
GGTGGAATGTCAGCATAAATAAGATAAGTTATAGAGTTTTGGAAGAAATA
TTTATTTTTATTGAGAAGAATGATCTATTCCCTTCTTCCATTTTGTTACC
TCTATCCAATTTACTTGGCACTGATGCCACTCTATTTGTCAAGCATGCAG
GCAATTTTAGAGTCAAAATTTTAAATCACATCAAGAAAAGTGCCGATTGT
CTTGATCTTCTCGTGGAATGCTTGTATCCAACTTTGCAAGAAGAAGGATT
TATTGGTCAGGAGTGTAGTAAAATTGGTGACCCTACAGGATAAATGGGGG
ATGAAAACAAAAACAAACTTTTTTCTCTGAAAGAGATGGAGAGTCTTTTT
TTCAAAAAGGAATTGCCTGAGTGGTGGAATGTCAGCATAAATAAGATAAG
TTATAGAGTTTTGGAAGAAATATTTATTTTTATTGAGAAGAATGATCTAT
TCCCTTCTTCCATTTTGTTACCTCTATCCAATTTACTTGGCACTGATGCC
ACTCTATTTGTCAAGCATGCAGGCAATTTTAGAGTCAAAATTTTAAATCA
CATCAAGAAAAGTGCCGATTGTCTTGATCTTCTCGTGGAATGCTTGTATC
CAACTTTGCAAGAAGAAGGATTTATTGGTCAGGAGTGTAGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013424XLOC_013424Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023881-proteinTCONS_00023881-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023881-exon-sc0000464-1575043694:119693..120369TCONS_00023881-exon-sc0000464-1575043694:119693..120369Clytia hemisphaericaexon
TCONS_00023881-exon-sc0000464-1575043694:114829..115850TCONS_00023881-exon-sc0000464-1575043694:114829..115850Clytia hemisphaericaexon
TCONS_00023881-exon-sc0000464-1510915933:119693..120369TCONS_00023881-exon-sc0000464-1510915933:119693..120369Clytia hemisphaericaexon
TCONS_00023881-exon-sc0000464-1510915933:114829..115850TCONS_00023881-exon-sc0000464-1510915933:114829..115850Clytia hemisphaericaexon
TCONS_00023881-exon-sc0000464-1491911889:119693..120369TCONS_00023881-exon-sc0000464-1491911889:119693..120369Clytia hemisphaericaexon
TCONS_00023881-exon-sc0000464-1491911889:114829..115850TCONS_00023881-exon-sc0000464-1491911889:114829..115850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000464supercontigsc0000464:114829..120369 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0529102	0	0	0	0	0.240582	0	0.2074	0	0	0	0	0.165871	0	0	0	0	0.425462	0	0.42811	0.284392	0	0	0.082058	0	0.53112	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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