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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023883 ID=TCONS_00023883|Name=TCONS_00023883|organism=Clytia hemisphaerica|type=transcript|length=588bp
ACCGTGACACTGAACCTTCAGAATCTGAAACTACTCCCACTCCTCCTTCA
ACACCAAGATTTTTACATAAGCTTTCTGACATCCAACTGTTCGACTGACC
TATCAACGTATATTTCTTGGGAATGCTGTGTTGATAAAACCACTCTGTGC
CCTGACATTATGTCAAACTGGCAAAAACTTAAACAAATGACCGAAAATTG
CAAGCCCAACATTACTGTAccttttatgcattttgaaatgGTAACGTACC
TGACTAAGAAAGGAGAACAGAAGGAGAGGCTTAAAGCCTTAAAGAAACAA
GTGAACATGGATTTTCTAACAAACTTCATAGAAaaacttttgccaaaaat
aatTTGGCATCGAAATATGTTGCGCCACTATCGAAACACAGTCAAAGCTG
CCACAGAAAATGTTAATGCAGTTTATCTTGATGTAGATTTTAGCGAAAAT
CTCACAGTACCTATAAAGTACGAGCCTCAATCCCTCCATTGGTCAAATGA
ACAAGTCACCGTGCACTCTGGTCTTATGAAGCTTCCTGGTACCAAAAGTT
ACCACCCATACTTTTCAGACACCAAGGTTCATGACCAA Run BLAST on NCBI protein sequence of TCONS_00023883-protein >TCONS_00023883-protein ID=TCONS_00023883-protein|Name=TCONS_00023883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
TVTLNLQNLKLLPLLLQHQDFYISFLTSNCSTDLSTYISWECCVDKTTLC
PDIMSNWQKLKQMTENCKPNITVPFMHFEMVTYLTKKGEQKERLKALKKQ
VNMDFLTNFIEKLLPKIIWHRNMLRHYRNTVKAATENVNAVYLDVDFSEN
LTVPIKYEPQSLHWSNEQVTVHSGLMKLPGTKSYHPYFSDTKVHDQ Run BLAST on NCBI transcript from alignment at sc0000464:135457..136830- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023883 ID=TCONS_00023883|Name=TCONS_00023883|organism=Clytia hemisphaerica|type=transcript|length=1374bp|location=Sequence derived from alignment at sc0000464:135457..136830- (Clytia hemisphaerica)
ACCGTGACACTGAACCTTCAGAATCTGAAACTACTCCCACTCCTCCTTCA
ACACCAAGATTTTTACATAAGGTAATTTTTTGAATCTTACTTATTTTTTA
ATTTACAAATGCGTGATTGTAAACTTGCTATTCTAATTTAGTAGTACTAT
TTCAAGTTTAATGAGCAAAATAATTAATATTTTTCAGAAACGAAGTTTAT
CAGGAAGAAACACACCAACAGATGAGAAGCTTTCCCCATTACTTTCGCCG
AATAGCCGCCAGAGAAAGAGTTATATGGCAGGAAAGGTGACTAGTCACAT
TCAGCAATTTGACTTGTCCAAAGTGGATCAGGTAGAAGTGTTGACGCTAT
CCTTAAAGCAGTTAGGAATATATGTTCAAATGAAATTCATTAGAAAACCA
ACAAAGGCTGGTCGAAAGTTAGCACCCCTTGCTACTAGAAATGCAGTGTG
GAGTTATTGGCATGAGAACAATCAAGAGTCTACTAACACAACACGTCTCG
CAAAGTTGAAGCTCTCTGACAAGAGCAAAATTCAATCAGGTTTAGACTTT
ATACAAACTGTGTCAGTTGTCAGACAACGAAACAGATTACACTATCAGAG
CATATGCAAAACTGTTCAGGTTACATACAACTGTATGTTAAATATATTCA
GAGCCACAAGGAAGAAGATCATGTATCATGGGGTACATTTCTGGCTCTTA
GGCCCTTCTACATAAAGCCTAATTCGTTGAAGGAAATGTGCTGTTGTAAG
CTCCACCTACACTGTCGATGGTCCATCAGCTCGTTTATCGAATGTTGCAA
GCTACAAAAAATTGAAATAGAGAAACAAGAAGTGACAGGTTATGATTCTT
TTTTCAGCTTTCTGACATCCAACTGTTCGACTGACCTATCAACGTATATT
TCTTGGGAATGCTGTGTTGATAAAACCACTCTGTGCCCTGACATTATGTC
AAACTGGCAAAAACTTAAACAAATGACCGAAAATTGCAAGCCCAACATTA
CTGTACCTTTTATGCATTTTGAAATGGTAACGTACCTGACTAAGAAAGGA
GAACAGAAGGAGAGGCTTAAAGCCTTAAAGAAACAAGTGAACATGGATTT
TCTAACAAACTTCATAGAAAAACTTTTGCCAAAAATAATTTGGCATCGAA
ATATGTTGCGCCACTATCGAAACACAGTCAAAGCTGCCACAGAAAATGTT
AATGCAGTTTATCTTGATGTAGATTTTAGCGAAAATCTCACAGTACCTAT
AAAGTACGAGCCTCAATCCCTCCATTGGTCAAATGAACAAGTCACCGTGC
ACTCTGGTCTTATGAAGCTTCCTGGTACCAAAAGTTACCACCCATACTTT
TCAGACACCAAGGTTCATGACCAA Coding sequence (CDS) from alignment at sc0000464:135457..136830- >TCONS_00023883 ID=TCONS_00023883|Name=TCONS_00023883|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at sc0000464:135457..136830- (Clytia hemisphaerica)
CTTTCTGACATCCAACTGTTCGACTGACCTATCAACGTATATTTCTTGGG
AATGCTGTGTTGATAAAACCACTCTGTGCCCTGACATTATGTCAAACTGG
CAAAAACTTAAACAAATGACCGAAAATTGCAAGCCCAACATTACTGTACC
TTTTATGCATTTTGAAATGGTAACGTACCTGACTAAGAAAGGAGAACAGA
AGGAGAGGCTTAAAGCCTTAAAGAAACAAGTGAACATGGATTTTCTAACA
AACTTCATAGAAAAACTTTTGCCAAAAATAATTTGGCATCGAAATATGTT
GCGCCACTATCGAAACACAGTCAAAGCTGCCACAGAAAATGTTAATGCAG
TTTATCTTGATGTAGATTTTAGCGAAAATCTCACAGTACCTATAAAGTAC
GAGCCTCAATCCCTCCATTGGTCAAATGAACAAGTCACCGTGCACTCTGG
TCTTATGAAGCTTCCTGGTACCAAAAGTTACCACCCATACTTTTCAGACA
CCAAGGTTCATGACCAAACCGTGACACTGAACCTTCAGAATCTGAAACTA
CTCCCACTCCTCCTTCAACACCAAGATTTTTACATAAGCTTTCTGACATC
CAACTGTTCGACTGACCTATCAACGTATATTTCTTGGGAATGCTGTGTTG
ATAAAACCACTCTGTGCCCTGACATTATGTCAAACTGGCAAAAACTTAAA
CAAATGACCGAAAATTGCAAGCCCAACATTACTGTACCTTTTATGCATTT
TGAAATGGTAACGTACCTGACTAAGAAAGGAGAACAGAAGGAGAGGCTTA
AAGCCTTAAAGAAACAAGTGAACATGGATTTTCTAACAAACTTCATAGAA
AAACTTTTGCCAAAAATAATTTGGCATCGAAATATGTTGCGCCACTATCG
AAACACAGTCAAAGCTGCCACAGAAAATGTTAATGCAGTTTATCTTGATG
TAGATTTTAGCGAAAATCTCACAGTACCTATAAAGTACGAGCCTCAATCC
CTCCATTGGTCAAATGAACAAGTCACCGTGCACTCTGGTCTTATGAAGCT
TCCTGGTACCAAAAGTTACCACCCATACTTTTCAGACACCAAGGTTCATG
ACCAAACCGTGACACTGAACCTTCAGAATCTGAAACTACTCCCACTCCTC
CTTCAACACCAAGATTTTTACATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023883-exon-sc0000464-1575043694:136760..136830 | TCONS_00023883-exon-sc0000464-1575043694:136760..136830 | Clytia hemisphaerica | exon |
| TCONS_00023883-exon-sc0000464-1575043694:135457..135973 | TCONS_00023883-exon-sc0000464-1575043694:135457..135973 | Clytia hemisphaerica | exon |
| TCONS_00023883-exon-sc0000464-1510915933:136760..136830 | TCONS_00023883-exon-sc0000464-1510915933:136760..136830 | Clytia hemisphaerica | exon |
| TCONS_00023883-exon-sc0000464-1510915933:135457..135973 | TCONS_00023883-exon-sc0000464-1510915933:135457..135973 | Clytia hemisphaerica | exon |
| TCONS_00023883-exon-sc0000464-1491911889:136760..136830 | TCONS_00023883-exon-sc0000464-1491911889:136760..136830 | Clytia hemisphaerica | exon |
| TCONS_00023883-exon-sc0000464-1491911889:135457..135973 | TCONS_00023883-exon-sc0000464-1491911889:135457..135973 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:135457..136830 - |
Blast
The following BLAST results are available for this feature:
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