TCONS_00023886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023886
Unique NameTCONS_00023886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023886 ID=TCONS_00023886|Name=TCONS_00023886|organism=Clytia hemisphaerica|type=transcript|length=323bp
CGACAACAATATGGAGTGTTTTCAACGATTATCTGATTTGTCCACAATAA
ATAATGAAGATGCTGAAAACCTTGGAATTCGTATCAATGTTCCGAATTAC
ATTGTGGAAAActataaacaaaaacaacaacaatccagcgaaaaacaaca
acaagaaaagaaaagaaaaacaacaaagagaaaaacacaaaaagaagaaa
caaacaCAGAGATGATCAAATCGATGCAAAAATCTCTAAGTAAGGCTAAA
ATCATTCTCgacaaggaaaagaaaaaaccgACCAAAccgaaagcaaaaaa
aaaaaagtttatggaGCTGCTCC
Run BLAST on NCBI

protein sequence of TCONS_00023886-protein

>TCONS_00023886-protein ID=TCONS_00023886-protein|Name=TCONS_00023886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
DNNMECFQRLSDLSTINNEDAENLGIRINVPNYIVENYKQKQQQSSEKQQ
QEKKRKTTKRKTQKEETNTEMIKSMQKSLSKAKIILDKEKKKPTKPKAKK
KKFMELL
Run BLAST on NCBI

transcript from alignment at sc0000464:217550..218019-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023886 ID=TCONS_00023886|Name=TCONS_00023886|organism=Clytia hemisphaerica|type=transcript|length=470bp|location=Sequence derived from alignment at sc0000464:217550..218019- (Clytia hemisphaerica)
CGACAACAATATGGAGTGTTTTCAACGATTATCTGATTTGTCCACAATAA
ATAATGAAGATGCTGAAAACCTTGGAATTCGTATCAATGTTCCGAATTAC
ATTGTGGAAAACTATAAACAAAAACAACAACAATCCAGCGAAAAACAACA
ACAAGAAAAGAAAAGAAAAACAACAAAGAGAAAAACACAAAAAGAAGAAA
CAAACACAGAGATGATCAAATCGATGCAAAAATCTCTAAGTAAGGTGAGT
ACTGTATCTAACTTTTTTCTCATAGACTTCTATAAGAATATTTCCAGGGT
GAGTTTGAGATAAATATTGTAAGTATTGTGATTTATATTCTTGCAAAAAA
ACATGTATTTATTTTTTCCATTTTCTATTATATATTTTCAGGCTAAAATC
ATTCTCGACAAGGAAAAGAAAAAACCGACCAAACCGAAAGCAAAAAAAAA
AAAGTTTATGGAGCTGCTCC

Coding sequence (CDS) from alignment at sc0000464:217550..218019-

>TCONS_00023886 ID=TCONS_00023886|Name=TCONS_00023886|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000464:217550..218019- (Clytia hemisphaerica)
GCTAAAATCATTCTCGACAAGGAAAAGAAAAAACCGACCAAACCGAAAGC
AAAAAAAAAAAAGTTTATGGAGCTGCTCGACAACAATATGGAGTGTTTTC
AACGATTATCTGATTTGTCCACAATAAATAATGAAGATGCTGAAAACCTT
GGAATTCGTATCAATGTTCCGAATTACATTGTGGAAAACTATAAACAAAA
ACAACAACAATCCAGCGAAAAACAACAACAAGAAAAGAAAAGAAAAACAA
CAAAGAGAAAAACACAAAAAGAAGAAACAAACACAGAGATGATCAAATCG
ATGCAAAAATCTCTAAGTAAGGCTAAAATCATTCTCGACAAGGAAAAGAA
AAAACCGACCAAACCGAAAGCAAAAAAAAAAAAGTTTATGGAGCTGCTCG
ACAACAATATGGAGTGTTTTCAACGATTATCTGATTTGTCCACAATAAAT
AATGAAGATGCTGAAAACCTTGGAATTCGTATCAATGTTCCGAATTACAT
TGTGGAAAACTATAAACAAAAACAACAACAATCCAGCGAAAAACAACAAC
AAGAAAAGAAAAGAAAAACAACAAAGAGAAAAACACAAAAAGAAGAAACA
AACACAGAGATGATCAAATCGATGCAAAAATCTCTAAGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013428XLOC_013428Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023886-proteinTCONS_00023886-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023886-exon-sc0000464-1575043694:217776..218019TCONS_00023886-exon-sc0000464-1575043694:217776..218019Clytia hemisphaericaexon
TCONS_00023886-exon-sc0000464-1575043694:217550..217628TCONS_00023886-exon-sc0000464-1575043694:217550..217628Clytia hemisphaericaexon
TCONS_00023886-exon-sc0000464-1510915933:217776..218019TCONS_00023886-exon-sc0000464-1510915933:217776..218019Clytia hemisphaericaexon
TCONS_00023886-exon-sc0000464-1510915933:217550..217628TCONS_00023886-exon-sc0000464-1510915933:217550..217628Clytia hemisphaericaexon
TCONS_00023886-exon-sc0000464-1491911889:217776..218019TCONS_00023886-exon-sc0000464-1491911889:217776..218019Clytia hemisphaericaexon
TCONS_00023886-exon-sc0000464-1491911889:217550..217628TCONS_00023886-exon-sc0000464-1491911889:217550..217628Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000464supercontigsc0000464:217550..218019 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.311183	0	1.05701	1.37883	1.25894	1.32644	2.40045	2.99636	0.262228	1.62406	0	0	0	0.644784	0.1767	0.189626	0.467208	0.239436	0	0	0.601738	1.76104	0.356796	0.648759	2.33872	6.26176	0	1.36614	0.345389	0.703793
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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