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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023892 ID=TCONS_00023892|Name=TCONS_00023892|organism=Clytia hemisphaerica|type=transcript|length=2078bp
AGCAGGAtcctgccttgacaaaaatcgccatctttgtttcgcaagtgtgc
aaaagtgaaagtagcagcaacgacacaaaaacaaacatctcgcacttgat
tgaatagtcaaactcgatataattttaaaaacactttcattttataaaaa
aaagaaaagtctacTTTGCTCGGGTTTTTTTCGTGAGCCAAATCGGTAGC
ATTTttcgaacatatacaaattttcGCCCCGCGTACGCAAATCTTGCCAA
atgatgctacactccctatttGGGCGCTccgcgccctcaaaacggtcgtt
ccgcaaaaatttattttttataattaaataaaaatgcAATGAAAATATGC
CCATTTCccatgaaaatttatttaaaagatttcaaTTCTGTAAACAAACT
ATATTATATACTCTAGGACATTATAAATCTGGCAAAACACTTTCCGCAGG
GCTCTATTTTTCGTGTAACTTTTAGCGGTCTGcgaaagtcaaaataaacc
caGCGGTTGTCCATCATTTTAGTGTTATCTTTGTCGATCCTGTGACCCTC
CATCTTAACCAATTTATCATCTGACGTTGCAAAGATAGGGGTTCTTGCTT
CCCATACAATGTCCTCAGGGTGATTGTTTTTGGGGGCTGGTAGATGTATG
GGCCATCCTTCCAGAAGGTTGAGAAAATCTGACCACGCAATGAGTTTTTC
GCACAAGCGGAGGTCGTTCAAAAGGACAACTTCAGCTTTTTCTGCACCAA
CCCAAGCAAAAGTCCCCGTAGCAGGTGATGAAAaggtttcaaaaactttt
agtaACGGCTTCAATGGAAAGGTTTTCCCGCAATTGGAAAGCCCAGTTAG
CATAACGTTGTTCCCTTTGTCCCGCCCAAACTCAATAGCCTGCAGAATTG
CCGCTTTGAATTTAGCAATGTCTACTTCATTTCTTTCCAAAACTTCTACT
GCGCAAAGCCTGTATTGATCATTACAAACACACTCCATGTCCCTGGCCTC
TCTCAAGATCTCCATCCTACTCATTTTCTTTCTATCTGCCTTTCGCTTTG
AATCTTTGACGCCCCAAGCTGTCTTCGTCAATTCTTTCTTCTTCAAAGCG
CTCTGTCTCATCACAAAACTCAAAAGATCACTTTTACCTTCATCATACTG
AAGCCTGGCTTCCAATAATAGATCGTCCTCAGTTTTAATATTACGGCAAA
TTATAATTTCGTAAACCGATATCTCATCTAACTTGACCTTTTCTCTCCTA
CCTCTCTTTGCTGGTGAATCTTCTCTTCTATCATCATTTTCCGCCTCACT
CATTTGCCTGCTGTTATTCATTCTACTCTCTGTCGCCTTAGCTGTGCGGG
gcctatttaaaagatatgggtGATTGTCTGAAACTACATAGTCTTCGTCT
TCCTTTTTAATGTACTCAAAGGCGTCCTCGTAGCACGTGTGAAACTCCCT
GAAATGACACTTTAACCCCGGGTAGGCCTCCTCCActccatttttctttt
ccacCCAACGAGTGCGCTGCATCAATTTNAAACTCCCTGAAACGACACTT
TAACCCCGGGTAGGCCTCCTCAActccatttttcttttccacCCAACGAG
TGCGCTGCATCAATTTTAACGCCAGGTGATAGTGGGGGTTACCGTCTTCA
TGCAATTTCTTACAACAAGCCCAATGATTGACAGCTTTCGGTCCGCCAAA
TGCGTTTACCCAAATTTCAGCGAATGACTCCCGCGTTGGGACAATCGATA
AGTCCGCTTGGCTGTAGGTGATCAAATATGTCTGTCTTCGAGATTCCTTA
CCACTATTACTGTTACGCTTCTTTCCTTTACCATTTTTAGTTGCCATATT
ATTCAATTTACTTTTTAAAACTGTAAATATAACAAAAGACATTATTTAGA
ACATATATTCATGTACTTTAGGATATTTTTAGGCTTcatacaaattttat
tttatgttctgTCAGTATTTTTATGCCCATAGTGAGTGGGATCGGGGTGG
GCTTTCTCTCAGTAGTAAAAAAGGTCACCACTATAGGCATAATAATTCTG
ATCAGATTTACACAGCTTATAGTCAATG Run BLAST on NCBI protein sequence of TCONS_00023892-protein >TCONS_00023892-protein ID=TCONS_00023892-protein|Name=TCONS_00023892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MQRTRWVEKKNGVEEAYPGLKCHFREFHTCYEDAFEYIKKEDEDYVVSDN
HPYLLNRPRTAKATESRMNNSRQMSEAENDDRREDSPAKRGRREKVKLDE
ISVYEIIICRNIKTEDDLLLEARLQYDEGKSDLLSFVMRQSALKKKELTK
TAWGVKDSKRKADRKKMSRMEILREARDMECVCNDQYRLCAVEVLERNEV
DIAKFKAAILQAIEFGRDKGNNVMLTGLSNCGKTFPLKPLLKVFETFSSP
ATGTFAWVGAEKAEVVLLNDLRLCEKLIAWSDFLNLLEGWPIHLPAPKNN
HPEDIVWEARTPIFATSDDKLVKMEGHRIDKDNTKMMDNRWVYFDFRRPL
KVTRKIEPCGKCFARFIMS Run BLAST on NCBI transcript from alignment at sc0000464:121890..123967 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023892 ID=TCONS_00023892|Name=TCONS_00023892|organism=Clytia hemisphaerica|type=transcript|length=2078bp|location=Sequence derived from alignment at sc0000464:121890..123967 (Clytia hemisphaerica)
CATTGACTATAAGCTGTGTAAATCTGATCAGAATTATTATGCCTATAGTG
GTGACCTTTTTTACTACTGAGAGAAAGCCCACCCCGATCCCACTCACTAT
GGGCATAAAAATACTGAcagaacataaaataaaatttgtatgAAGCCTAA
AAATATCCTAAAGTACATGAATATATGTTCTAAATAATGTCTTTTGTTAT
ATTTACAGTTTTAAAAAGTAAATTGAATAATATGGCAACTAAAAATGGTA
AAGGAAAGAAGCGTAACAGTAATAGTGGTAAGGAATCTCGAAGACAGACA
TATTTGATCACCTACAGCCAAGCGGACTTATCGATTGTCCCAACGCGGGA
GTCATTCGCTGAAATTTGGGTAAACGCATTTGGCGGACCGAAAGCTGTCA
ATCATTGGGCTTGTTGTAAGAAATTGCATGAAGACGGTAACCCCCACTAT
CACCTGGCGTTAAAATTGATGCAGCGCACTCGTTGGgtggaaaagaaaaa
tggagTTGAGGAGGCCTACCCGGGGTTAAAGTGTCGTTTCAGGGAGTTTN
AAATTGATGCAGCGCACTCGTTGGgtggaaaagaaaaatggagTGGAGGA
GGCCTACCCGGGGTTAAAGTGTCATTTCAGGGAGTTTCACACGTGCTACG
AGGACGCCTTTGAGTACATTAAAAAGGAAGACGAAGACTATGTAGTTTCA
GACAATCacccatatcttttaaataggcCCCGCACAGCTAAGGCGACAGA
GAGTAGAATGAATAACAGCAGGCAAATGAGTGAGGCGGAAAATGATGATA
GAAGAGAAGATTCACCAGCAAAGAGAGGTAGGAGAGAAAAGGTCAAGTTA
GATGAGATATCGGTTTACGAAATTATAATTTGCCGTAATATTAAAACTGA
GGACGATCTATTATTGGAAGCCAGGCTTCAGTATGATGAAGGTAAAAGTG
ATCTTTTGAGTTTTGTGATGAGACAGAGCGCTTTGAAGAAGAAAGAATTG
ACGAAGACAGCTTGGGGCGTCAAAGATTCAAAGCGAAAGGCAGATAGAAA
GAAAATGAGTAGGATGGAGATCTTGAGAGAGGCCAGGGACATGGAGTGTG
TTTGTAATGATCAATACAGGCTTTGCGCAGTAGAAGTTTTGGAAAGAAAT
GAAGTAGACATTGCTAAATTCAAAGCGGCAATTCTGCAGGCTATTGAGTT
TGGGCGGGACAAAGGGAACAACGTTATGCTAACTGGGCTTTCCAATTGCG
GGAAAACCTTTCCATTGAAGCCGTtactaaaagtttttgaaacctTTTCA
TCACCTGCTACGGGGACTTTTGCTTGGGTTGGTGCAGAAAAAGCTGAAGT
TGTCCTTTTGAACGACCTCCGCTTGTGCGAAAAACTCATTGCGTGGTCAG
ATTTTCTCAACCTTCTGGAAGGATGGCCCATACATCTACCAGCCCCCAAA
AACAATCACCCTGAGGACATTGTATGGGAAGCAAGAACCCCTATCTTTGC
AACGTCAGATGATAAATTGGTTAAGATGGAGGGTCACAGGATCGACAAAG
ATAACACTAAAATGATGGACAACCGCtgggtttattttgactttcgCAGA
CCGCTAAAAGTTACACGAAAAATAGAGCCCTGCGGAAAGTGTTTTGCCAG
ATTTATAATGTCCTAGAGTATATAATATAGTTTGTTTACAGAAttgaaat
cttttaaataaattttcatggGAAATGGGCATATTTTCATTgcattttta
tttaattataaaaaataaatttttgcggaacgaccgttttgagggcgcgg
AGCGCCCaaatagggagtgtagcatcatTTGGCAAGATTTGCGTACGCGG
GGCgaaaatttgtatatgttcgaaAAATGCTACCGATTTGGCTCACGAAA
AAAACCCGAGCAAAgtagacttttcttttttttataaaatgaaagtgttt
ttaaaattatatcgagtttgactattcaatcaagtgcgagatgtttgttt
ttgtgtcgttgctgctactttcacttttgcacacttgcgaaacaaagatg
gcgatttttgtcaaggcaggaTCCTGCT Coding sequence (CDS) from alignment at sc0000464:121890..123967 >TCONS_00023892 ID=TCONS_00023892|Name=TCONS_00023892|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0000464:121890..123967 (Clytia hemisphaerica)
ATGCAGCGCACTCGTTGGgtggaaaagaaaaatggagTGGAGGAGGCCTA
CCCGGGGTTAAAGTGTCATTTCAGGGAGTTTCACACGTGCTACGAGGACG
CCTTTGAGTACATTAAAAAGGAAGACGAAGACTATGTAGTTTCAGACAAT
CacccatatcttttaaataggcCCCGCACAGCTAAGGCGACAGAGAGTAG
AATGAATAACAGCAGGCAAATGAGTGAGGCGGAAAATGATGATAGAAGAG
AAGATTCACCAGCAAAGAGAGGTAGGAGAGAAAAGGTCAAGTTAGATGAG
ATATCGGTTTACGAAATTATAATTTGCCGTAATATTAAAACTGAGGACGA
TCTATTATTGGAAGCCAGGCTTCAGTATGATGAAGGTAAAAGTGATCTTT
TGAGTTTTGTGATGAGACAGAGCGCTTTGAAGAAGAAAGAATTGACGAAG
ACAGCTTGGGGCGTCAAAGATTCAAAGCGAAAGGCAGATAGAAAGAAAAT
GAGTAGGATGGAGATCTTGAGAGAGGCCAGGGACATGGAGTGTGTTTGTA
ATGATCAATACAGGCTTTGCGCAGTAGAAGTTTTGGAAAGAAATGAAGTA
GACATTGCTAAATTCAAAGCGGCAATTCTGCAGGCTATTGAGTTTGGGCG
GGACAAAGGGAACAACGTTATGCTAACTGGGCTTTCCAATTGCGGGAAAA
CCTTTCCATTGAAGCCGTtactaaaagtttttgaaacctTTTCATCACCT
GCTACGGGGACTTTTGCTTGGGTTGGTGCAGAAAAAGCTGAAGTTGTCCT
TTTGAACGACCTCCGCTTGTGCGAAAAACTCATTGCGTGGTCAGATTTTC
TCAACCTTCTGGAAGGATGGCCCATACATCTACCAGCCCCCAAAAACAAT
CACCCTGAGGACATTGTATGGGAAGCAAGAACCCCTATCTTTGCAACGTC
AGATGATAAATTGGTTAAGATGGAGGGTCACAGGATCGACAAAGATAACA
CTAAAATGATGGACAACCGCtgggtttattttgactttcgCAGACCGCTA
AAAGTTACACGAAAAATAGAGCCCTGCGGAAAGTGTTTTGCCAGATTTAT
AATGTCCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023892-exon-sc0000464-1491911889:121890..123967 | TCONS_00023892-exon-sc0000464-1491911889:121890..123967 | Clytia hemisphaerica | exon |
| TCONS_00023892-exon-sc0000464-1510915933:121890..123967 | TCONS_00023892-exon-sc0000464-1510915933:121890..123967 | Clytia hemisphaerica | exon |
| TCONS_00023892-exon-sc0000464-1575043694:121890..123967 | TCONS_00023892-exon-sc0000464-1575043694:121890..123967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:121890..123967 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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