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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023897 ID=TCONS_00023897|Name=TCONS_00023897|organism=Clytia hemisphaerica|type=transcript|length=1019bp
TTCAAAGGTTGAGAATCTACTTCGGGTTAAAGGCTTTGgaacacgagaag
ttttttttgctctaTCCCataccaacacaagaaaaaggtgtgtgtcccat
ggtttcttttttgcTTCATGGGACAAAACGTGagagaaatacccaaaaga
cacgctgattttgtccccgAGACAATTGAATAAAGATCCTCCAAAGAATT
GATACCAACAATGTATATGTTTTAGTAATATTTCTATTGAATGTTAATGA
tctagaaatataaatcaaaagaatATATTAATGTCTTTCTATGATCCTTC
ATCCCCCCCAGTTTGACGAAGTCAAAATCAAGTCAATAGGAAGAAGTACA
ATATCAGTTTATGTACAGTTCATTAGTATCAGTTCGTATCATTTCCAATG
TCCAGTTTCTGGTTCATAACGACGAGGTGAACGACGTTGGCGTTGTGGTC
GTGGGGTGGACACAACTGGGGGAGGACTCTTGTTAGGTGACTGATCTTCG
GGATGGGATGGTTCGTCTTGTATGGGGACGTCAGGGATGGGACGGATTTC
CATGGGTGCAGGAACTGTCGACGATGGGGACGTCGCAGGAACGCTCGGTG
CAGGTTCCTGTGCCTTGGGAGGTGGAGATTCATGTCTAATGGAAGCGGGT
ACTGGCTGACCGACGAATGATTGCCTGCTGACAATTTCTGTTGAAGCAGG
TTGGAATCGGCGAAGATGTTGACGGTTACGACGTGTGACGCGACCAGTGC
CGTCGACTTTTAGTGTGTAACTACTGTGGCCATGGTCTTCCACAACGGTA
CCAGAACGCTCCCAGAGTTTTGGATGGGGACCGGTTTGATTCTGTATGTA
GCATCGATCGCCGAAACGAAGAGGAGGTAGCGGTCGTGTGTGGTTGTTGC
GTTCTTCGGCTGATCGGTGGAAACGTTGTCGAAGGGCCTCCTCCTTTTTC
TTCCAAGCAGTACGCCAAACTGGGCTGATGTTGTCATTGTTGAACTTCTC
CAGTCTGTTAACGAAAGCA Run BLAST on NCBI protein sequence of TCONS_00023897-protein >TCONS_00023897-protein ID=TCONS_00023897-protein|Name=TCONS_00023897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
AFVNRLEKFNNDNISPVWRTAWKKKEEALRQRFHRSAEERNNHTRPLPPL
RFGDRCYIQNQTGPHPKLWERSGTVVEDHGHSSYTLKVDGTGRVTRRNRQ
HLRRFQPASTEIVSRQSFVGQPVPASIRHESPPPKAQEPAPSVPATSPSS
TVPAPMEIRPIPDVPIQDEPSHPEDQSPNKSPPPVVSTPRPQRQRRSPRR
YEPETGHWK Run BLAST on NCBI transcript from alignment at sc0000464:145453..146471 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023897 ID=TCONS_00023897|Name=TCONS_00023897|organism=Clytia hemisphaerica|type=transcript|length=1019bp|location=Sequence derived from alignment at sc0000464:145453..146471 (Clytia hemisphaerica)
TGCTTTCGTTAACAGACTGGAGAAGTTCAACAATGACAACATCAGCCCAG
TTTGGCGTACTGCTTGGAAGAAAAAGGAGGAGGCCCTTCGACAACGTTTC
CACCGATCAGCCGAAGAACGCAACAACCACACACGACCGCTACCTCCTCT
TCGTTTCGGCGATCGATGCTACATACAGAATCAAACCGGTCCCCATCCAA
AACTCTGGGAGCGTTCTGGTACCGTTGTGGAAGACCATGGCCACAGTAGT
TACACACTAAAAGTCGACGGCACTGGTCGCGTCACACGTCGTAACCGTCA
ACATCTTCGCCGATTCCAACCTGCTTCAACAGAAATTGTCAGCAGGCAAT
CATTCGTCGGTCAGCCAGTACCCGCTTCCATTAGACATGAATCTCCACCT
CCCAAGGCACAGGAACCTGCACCGAGCGTTCCTGCGACGTCCCCATCGTC
GACAGTTCCTGCACCCATGGAAATCCGTCCCATCCCTGACGTCCCCATAC
AAGACGAACCATCCCATCCCGAAGATCAGTCACCTAACAAGAGTCCTCCC
CCAGTTGTGTCCACCCCACGACCACAACGCCAACGTCGTTCACCTCGTCG
TTATGAACCAGAAACTGGACATTGGAAATGATACGAACTGATACTAATGA
ACTGTACATAAACTGATATTGTACTTCTTCCTATTGACTTGATTTTGACT
TCGTCAAACTGGGGGGGATGAAGGATCATAGAAAGACATTAATATattct
tttgatttatatttctagaTCATTAACATTCAATAGAAATATTACTAAAA
CATATACATTGTTGGTATCAATTCTTTGGAGGATCTTTATTCAATTGTCT
cggggacaaaatcagcgtgtcttttgggtatttctctCACGTTTTGTCCC
ATGAAgcaaaaaagaaaccatgggacacacacctttttcttgtgttggta
tGGGAtagagcaaaaaaaacttctcgtgttcCAAAGCCTTTAACCCGAAG
TAGATTCTCAACCTTTGAA Coding sequence (CDS) from alignment at sc0000464:145453..146471 >TCONS_00023897 ID=TCONS_00023897|Name=TCONS_00023897|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000464:145453..146471 (Clytia hemisphaerica)
GCTTTCGTTAACAGACTGGAGAAGTTCAACAATGACAACATCAGCCCAGT
TTGGCGTACTGCTTGGAAGAAAAAGGAGGAGGCCCTTCGACAACGTTTCC
ACCGATCAGCCGAAGAACGCAACAACCACACACGACCGCTACCTCCTCTT
CGTTTCGGCGATCGATGCTACATACAGAATCAAACCGGTCCCCATCCAAA
ACTCTGGGAGCGTTCTGGTACCGTTGTGGAAGACCATGGCCACAGTAGTT
ACACACTAAAAGTCGACGGCACTGGTCGCGTCACACGTCGTAACCGTCAA
CATCTTCGCCGATTCCAACCTGCTTCAACAGAAATTGTCAGCAGGCAATC
ATTCGTCGGTCAGCCAGTACCCGCTTCCATTAGACATGAATCTCCACCTC
CCAAGGCACAGGAACCTGCACCGAGCGTTCCTGCGACGTCCCCATCGTCG
ACAGTTCCTGCACCCATGGAAATCCGTCCCATCCCTGACGTCCCCATACA
AGACGAACCATCCCATCCCGAAGATCAGTCACCTAACAAGAGTCCTCCCC
CAGTTGTGTCCACCCCACGACCACAACGCCAACGTCGTTCACCTCGTCGT
TATGAACCAGAAACTGGACATTGGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023897-exon-sc0000464-1491911889:145453..146471 | TCONS_00023897-exon-sc0000464-1491911889:145453..146471 | Clytia hemisphaerica | exon |
| TCONS_00023897-exon-sc0000464-1510915933:145453..146471 | TCONS_00023897-exon-sc0000464-1510915933:145453..146471 | Clytia hemisphaerica | exon |
| TCONS_00023897-exon-sc0000464-1575043694:145453..146471 | TCONS_00023897-exon-sc0000464-1575043694:145453..146471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000464 | supercontig | sc0000464:145453..146471 . |
Blast
The following BLAST results are available for this feature:
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