TCONS_00023970 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023970
Unique Name	TCONS_00023970
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1404

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000468:148862..153448+

transcript sequence

>TCONS_00023970 ID=TCONS_00023970|Name=TCONS_00023970|organism=Clytia hemisphaerica|type=transcript|length=1404bp
GTTAATTTCAGTGTCCGAGAAATGTATACATTGAAGACGGAAAACCTTGC
AACAATGAAACAGGAGTCACTCAAGGACTTTGTTATTCAGGATTTTGCAA
GATACAAACAACACAATGTGAAACATTGTGGGGAGAAACGGGCGCCAAAG
CAGAGAATCCATGTTTCAACGCCAACGTCGATGGGGACGGCTTTGGTAAC
TGCGGAACCAAAGAAAACGGAGATCATATTCCTTGCTCAGAAACAAACAA
GCTTTGTGGAAAGATTCAATGTGACAGCAAACCAGGAACTAGTCTACCGA
GGTTTCCGAAGATCGGAAGTAACCGTGCGGTGAAGATCACAACGTATTAC
GTCGGTGGGAGATCCTTCGACTGCAGGGTTGTGAAGATGGATTACCCGAA
GAATTTAGATGATCCAACGATGACTTTCGATGGAACAAAATGTGGTGACA
ATTCTgTCTGCATCAGCAACAAATGTGTAAACATTAATTCATTACCTCAT
CGGAAGACGTGCGAACCAGGTCGATGTAAAAATGGAGGGGTTTGTAACAG
TAACGGAAATTGTCACTGCCCGAATGGATGGGCGTGCCCGTATTGTAATG
TGACCGGTATCGGAGGGAGTTTGGATTCCGGACAAGGATGTTTTAAAAAC
GAGACAGACGGAGGTGAAGGTGGAGGAGAAGGTGGCGGGGAAGGCGGTGG
AAAGGGCGGACAGGGCGGAAATTCAGGAGAAGAAACAGACGAATACCTAG
TTTACTTGTGGCTCCTCCTGATCCCCGTCGTCATCTTGGTCGTGGTCCTT
CTTATCCTCAAGAAAGATGTCATCTGCAAAAAGACCAATCCTAAGCGGCA
ATGGAGAGTTTCGGCAAGTGATGGTGGGGCATACGGCTCCAATCAAACTG
GCCAAAAAATAAACACCGTCAAAGTTCAAGAAAATGATCATTCAGAGCAT
TTCGTCAAAAATCCGTACGCTTAAGACTTGCAGATGGAAAAGATGTTTTC
TTCAGGACAAACTCTTGTTACAAGTACCATTTTATTACAGAGCTTTAAGT
GACGGAAccattcttttataaaaaattttggacATTGTTTTAAGAAATTT
AAGTGATTTCAAAATCACGATTAGGGATTACACGAGAAATCCCGCTCAAA
TCAGATGTATTCATTTAAAAGATCAATGCGAccataacttgaaaattttc
tgCGATTTAGTTTAGTTTAGCTATCAGTTTGTAAATATCTAGTTTTAGAA
TTTTCATAGATTTTATACCTTCGGtgtttgaatttcttttcaagagATAT
TTTAATCTtattgtaaattattttgaattataatcaagttataatttcaa
aaatcttaacaAACTATTTTCTTCATTGAGCTGCTTTGGTGCCCTATGAA
CAGA

Run BLAST on NCBI

transcript from alignment at sc0000468:148862..153448+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023970 ID=TCONS_00023970|Name=TCONS_00023970|organism=Clytia hemisphaerica|type=transcript|length=4587bp|location=Sequence derived from alignment at sc0000468:148862..153448+ (Clytia hemisphaerica)
GTTAATTTCAGTGTCCGAGAAATGTATACATTGTTAATTTCAGTGTCCGA
GAAATGTATATATTATTAATTTCAGTGTCCGAGAAATTTATACATTGTTA
ATTTCAGTGTCCGAGAAATGTATACATTATTAATTTCAGTGTCCGAGAAA
TTTATACATTGTTAATTTCAGTGTCCGAGAAATGTATACATTGAAGACGG
AAAACCTTGCAACAATGAAACAGTAAGTAGTCTGCCAACATAcgtagata
gatagatagaatgGGTATTCGATATTTAACGTGGATTGCCTAGTAACTAG
GACTTTCAGACATTCTTTCGATTGTACTCACGGGGTCCACAGCCAGCCGG
TTTGGCTATCATTGgattgaacggaacattggaagaaGCGGGAAATCCTT
GGTTTGAAACGCTAACGCCTTTGAcaacttggccatcgctccttaACTCa
ttagatgttttttttaatcataaaaatgtttcatttatcTCAACTACACG
CTAGTACGTTTTACAGCAGTTCCCAATCCTGCTTAAACAATTTTGGTCTT
GATCTATAACGTGAAATTTATTTTAAGGGAGTCACTCAAGGACTTTGTTA
TTCAGGATTTTGCAAGATACAAACAACACAATGTGAAACATTGTGGGGAG
AAAGTAAGTCCGCTAATCATATGGTTGTGACGAAACTATCATATCTGTTA
AAGTTGATTTGAAAAAACCCTAGCACTGTATCTCTCGTGTCAAACCAGTA
AATgtttaaatgtttctttttttaattatttgcgTTGATATAACTTAAAA
ACGTGTTGTTTActcacaaaatttgaaaattcattattcttTTCTCTTCG
CACTAGCGGGCGCCAAAGCAGAGAATCCATGTTTCAACGCCAACGTCGAT
GGGGACGGCTTTGGTAACTGCGGAACCAAAGAAAACGGAGATCATATTCC
TTGCTCAGAAACGTAAGTTTATAACTTCCTTTCAAATCACCGCATGTTCA
CGTTTACGTTGGTTAAAAAAACCGTATTTGTTTTTTGAGCGACGTTTGAC
CCATTTAATACTGTTTTGAGGAATTTTTTCGAACTGTTCTAACCCTTTTC
TTTCTTCTGTTTTTTCTGCAGAAACAAGCTTTGTGGAAAGATTCAATGTG
ACAGCAAACCAGGAACTAGTCTACCGAGGTTTCCGAAGATCGGAAGTAAC
CGTGCGGTGAAGATCACAACGTATTACGTCGGTGGGAGATCCTTCGACTG
CAGGTAAAGAATTCATATCTACTTCAACTGCTTACTTTTAAGTTACTAAA
CATACGTTTACAACAACATAAATTCATGGAacatttcttttgatatttta
aggTTTATGTTAGGTCTacgttttagattttttttgacNTTACTTTTAAG
TTACTAAACATACGTTTACAACAACATAAATTCATGGAacatttcttttg
atatttttttggacaTTTTAGGGTTGTGAAGATGGATTACCCGAAGAATT
TAGATGATCCAACGATGACTTTCGATGGAACAAAATGTGGTGACAATTCT
GTAAGATTTTTCATATCATGGAACGTtcagttttttgatttttgaatcca
ACAATAGCTCAAATACTAAAACTTTGTTCTGATTTCAaatgttttagata
aaaaatttacTTAGCCGattggcttttccagaaaaaaatcgtataccccc
tgttgagaaGGTCCATCCTTCtatggctggaaatgctgtaccCCCCTGGA
ACTCCAGGTAAATTCAggcttaaacccctctggaattatGAATTTtcgta
ggatttaaaaagctacccatggaattccagttatttttgacagatttttg
tatctccctatggaattccaccACATATGAAACCTTGCTCCCTTGGAACG
AAAATAGACCTcatcaacagggggtatacggttttctTCGGGAAAAGCCC
AACGAGAACTCCCATAATCACACTGTAATTCATTTAATTGAATGATCTTC
CACCATCCTTGGATATTTTGAAGTACGCAGAggttattttgatgttttag
gTCTGCATCAGCAACAAATGTGTAAACATTAATTCATTACCTCATCGGAA
GACGTGTGAACCAGGTCGATGTAAAAATGGAGGGGTAAGTAAAAAACAGG
TCGTATTTTTAACAAGCTATTAAATGAACGCAACAGAGACTTTTCCTTTC
ATTCTTCTACAAGACCTGGTTGATTTCATAATGCCCGTTATACTGGATTT
ATCCTTCGGTCCAATTGATTTCATTATCGAGGTTAATAATCAAAACtaga
attattttcaatttttgatttNTCGGTCCAATTGATTTCCTTATCGAGGT
TAATAATCAAAACtagaattattttcaatttttaattcagGTTTGTAACA
GTAACGGAAATTGTCACTGCCCGAATGGATGGGCGTGCCCGTATTGTAAT
GTGACCGGTATCGGAGGGAGTTTGGATTCCGGACAAGGATGTTTTAAAAA
CGAGACAGACGGAGGTGAAGGTGGAGGTACACAAATTTGAATTTAGACGG
AAATGTTCATTTTGATTGAAGCCAGTGCAACTTTCTAATTGCTTAAAAGG
CATTATTTTGAGCTGAATACACTTTCTCAATCCCAGTAACCACGAAAATG
ATTCTTATAGGGAGGGGTAACTAAACTCTTGCACACTGTCTTCATACAAA
AgtttccattgtttttttctatGGCAGGAGAAGGTGGCGGGGAAGGCNGC
TGGAAATGCTGTACCCCCCTGGAACTCCAGGTAAATTCAggcttaaaccc
ctctggaattatGAATTTtcgtaggatttaaaaagctacccatggaattc
cagttatttttgacagatttttgtatctccttatggaattccaccaCATA
TGAAACCTTGCTCCCTTGGAACGAAAATAGACCTcatcaacagggggtat
acggttttcttctggaaaagcccaacgAGAACTCCCATAATCACACTGTA
ATTCATTTAATTGAATGATCTTCCACCATCCTTGGATATTTTGAAGTACG
CAGAggttattttgatgttttaggTCTGCATCAGCAACAAATGTGTAAAC
ATTAATTCATTACCTCATCGGAAGACGTGCGAACCAGGTCGATGTAAAAA
TGGAGGGGTAAGTAAAAAACAGGTCGTATTTTTCACAAGCTATTAAATGA
ACGCAACAGAGACTTTTCCTTTCATTCTTCTACAAGACCTGGTTGATTTC
ATAATGCCAGTTATACTGGATTTATCCTTCGGTCCAATTGATTTCCTTAT
CGAGGTTAATAATCAAAACtagaattattttcaatttttaattcagGTTT
GTAACAGTAACGGAAATTGTCACTGCCCGAATGGATGGGCGTGCCCGTAT
TGTAATGTGACCGGTATCGGAGGGAGTTTGGATTCCGGACAAGGATGTTT
TAAAAACGAGACAGACGGAGGTGAAGGTGGAGGTACACAAATTTGAATTT
AGACGGAAATGTTCATTTTGATTGAAGCCAGTGCAACTTTCTAATTGCTT
AAAAGGCATTATTTTGAGCTGAATACACTTTCTCAATCCCAGTAACCACG
AAAATGATTCTTATAGGGAGGGGTAACTAAACTCTTGCACACTGTCTTCA
TACAAAAgtttccattgtttttttctatGGCAGGAGAAGGTGGCGGGGAA
GGCGGTGGAAAGGGCGGACAGGGCGGAAATTCAGGAGAAGAAACAGACGA
ATACCTAGTTTACTTGTGGCTCCTCCTGATCCCCGTCGTCATCTTGGTCG
TGGTCCTTCTTATCCTCAAGAAAGATGTCATCTGCAAAAAGACCAATCCT
AAGCGGCAATGGAGGTTTGTCTTTCTCTGAAGGCTTCTTTTTAATCTTTC
ACATACACAGTCAATACTGCGAATGTTAATTTGGTTTTATTTCAGACTTg
gttttaatatatttttttcattacaTACATCAAACTCAGCAATAAAACTT
CCCTTACTAATTTTCATATGcaacattttttctttgtagAGTTTCGGCAA
GTGATGGTGGGGCATACGGCTCCAATCAAACTGGCCAAAAAATAAACACC
GTCAAAGTTCAAGAAAATGATCATTCAGAGCATTTCGTCAAAAATCCGTA
CGCTTAAGACTTGCAGATGGAAAAGATGTTTTCTTCAGGACAAACTCTTG
TTACAAGTACCATTTTATTACAGAGCTTTAAGTGACGGAAccattctttt
ataaaaaattttggacATTGTTTTAAGAAATTTAAGTGATTTCAAAATCA
CGATTAGGGATTACACGAGAAATCCCGCTCAAATCAGATGTATTCATTTA
AAAGATCAATGCGAccataacttgaaaattttctgCGATTTAGTTTAGTT
TAGCTATCAGTTTGTAAATATCTAGTTTTAGAATTTTCATAGATTTTATA
CCTTCGGtgtttgaatttcttttcaagagATATTTTAATCTtattgtaaa
ttattttgaattataatcaagttataatttcaaaaatcttaacaAACTAT
TTTCTTCATTGAGCTGCTTTGGTGCCCTATGAACAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013464	XLOC_013464	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000468	supercontig	sc0000468:148862..153448 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0238717	0	0	0	0.0800732	0	0.0821431	0	0	0	0	0	0.190385	0	0	0	0	0.213002	0	5.90062e-06	0.0108351	1.10482	0.15445	4.38923e-09	0	0	3.20511	5.04403e-09	0	0

Blast

[Close]

BLAST of TCONS_00023970 vs. Swiss-Prot (Human)
Match: ADA19 (Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.589e-34
Identity = 89/214 (41.59%), Postives = 109/214 (50.93%), Query Frame = 3

Query:    9 QCPRNVYIEDGKPCNNETGVTQGLCYSGFCKIQTTQCETLWGETGAKAENPCFN-ANVDGDGFGNCGTKENGDHIPCSETNKLCGKIQCDSKPGTSLPRFPKIGSNRAVKI-TTYYVGGRSFDCRVVKM----DYPKNLDDPTMTFDGTKCGDNSVCISNKCVNINSLPHRKTCEPGRCKNGGVCNSNGNCHCPNGWACPYCNVTGIGGSLDSG 632
             CP N Y  DG PC  E G  Q  CY+G C     QC+ LWG     A + CF   NV GD FGNCG   NG+H  C+  +  CGKIQC S     L        + AV I TT  + GR   CR   +    +   ++ DP +   GTKCG N +C   +C N  S    + C   +C   GVCN+N NCHC  GWA P+CN  G GGS+DSG
Sbjct:  493 HCPTNFYQMDGTPC--EGG--QAYCYNGMCLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKDMNGEHRKCNMRDAKCGKIQCQSSEARPL-------ESNAVPIDTTIIMNGRQIQCRGTHVYRGPEEEGDMLDPGLVMTGTKCGYNHICFEGQCRN-TSFFETEGCG-KKCNGHGVCNNNQNCHCLPGWAPPFCNTPGHGGSIDSG 693

The following BLAST results are available for this feature:

BLAST of TCONS_00023970 vs. Swiss-Prot (Human)

BLAST of TCONS_00023970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADA19	2.589e-34	41.59	Disintegrin and metalloproteinase domain-containin...	[more]

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TCONS_00023970 (transcript) - C. hemisphaerica