TCONS_00023971 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023971
Unique Name	TCONS_00023971
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1348

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000468:148890..153448+

transcript sequence

>TCONS_00023971 ID=TCONS_00023971|Name=TCONS_00023971|organism=Clytia hemisphaerica|type=transcript|length=1348bp
CATTGAAGACGGAAAACCTTGCAACAATGAAACAGATTTTGCAAGATACA
AACAACACAATGTGAAACATTGTGGGGAGAAACGGGCGCCAAAGCAGAGA
ATCCATGTTTCAACGCCAACGTCGATGGGGACGGCTTTGGTAACTGCGGA
ACCAAAGAAAACGGAGATCATATTCCTTGCTCAGAAACAAACAAGCTTTG
TGGAAAGATTCAATGTGACAGCAAACCAGGAACTAGTCTACCGAGGTTTC
CGAAGATCGGAAGTAACCGTGCGGTGAAGATCACAACGTATTACGTCGGT
GGGAGATCCTTCGACTGCAGGGTTGTGAAGATGGATTACCCGAAGAATTT
AGATGATCCAACGATGACTTTCGATGGAACAAAATGTGGTGACAATTCTg
TCTGCATCAGCAACAAATGTGTAAACATTAATTCATTACCTCATCGGAAG
ACGTGCGAACCAGGTCGATGTAAAAATGGAGGGGTTTGTAACAGTAACGG
AAATTGTCACTGCCCGAATGGATGGGCGTGCCCGTATTGTAATGTGACCG
GTATCGGAGGGAGTTTGGATTCCGGACAAGGATGTTTTAAAAACGAGACA
GACGGAGGTGAAGGTGGAGGAGAAGGTGGCGGGGAAGGCGGTGGAAAGGG
CGGACAGGGCGGAAATTCAGGAGAAGAAACAGACGAATACCTAGTTTACT
TGTGGCTCCTCCTGATCCCCGTCGTCATCTTGGTCGTGGTCCTTCTTATC
CTCAAGAAAGATGTCATCTGCAAAAAGACCAATCCTAAGCGGCAATGGAG
AGTTTCGGCAAGTGATGGTGGGGCATACGGCTCCAATCAAACTGGCCAAA
AAATAAACACCGTCAAAGTTCAAGAAAATGATCATTCAGAGCATTTCGTC
AAAAATCCGTACGCTTAAGACTTGCAGATGGAAAAGATGTTTTCTTCAGG
ACAAACTCTTGTTACAAGTACCATTTTATTACAGAGCTTTAAGTGACGGA
AccattcttttataaaaaattttggacATTGTTTTAAGAAATTTAAGTGA
TTTCAAAATCACGATTAGGGATTACACGAGAAATCCCGCTCAAATCAGAT
GTATTCATTTAAAAGATCAATGCGAccataacttgaaaattttctgCGAT
TTAGTTTAGTTTAGCTATCAGTTTGTAAATATCTAGTTTTAGAATTTTCA
TAGATTTTATACCTTCGGtgtttgaatttcttttcaagagATATTTTAAT
CTtattgtaaattattttgaattataatcaagttataatttcaaaaatct
taacaAACTATTTTCTTCATTGAGCTGCTTTGGTGCCCTATGAACAGA

Run BLAST on NCBI

transcript from alignment at sc0000468:148890..153448+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023971 ID=TCONS_00023971|Name=TCONS_00023971|organism=Clytia hemisphaerica|type=transcript|length=4559bp|location=Sequence derived from alignment at sc0000468:148890..153448+ (Clytia hemisphaerica)
CATTGTTAATTTCAGTGTCCGAGAAATGTATATATTATTAATTTCAGTGT
CCGAGAAATTTATACATTGTTAATTTCAGTGTCCGAGAAATGTATACATT
ATTAATTTCAGTGTCCGAGAAATTTATACATTGTTAATTTCAGTGTCCGA
GAAATGTATACATTGAAGACGGAAAACCTTGCAACAATGAAACAGTAAGT
AGTCTGCCAACATAcgtagatagatagatagaatgGGTATTCGATATTTA
ACGTGGATTGCCTAGTAACTAGGACTTTCAGACATTCTTTCGATTGTACT
CACGGGGTCCACAGCCAGCCGGTTTGGCTATCATTGgattgaacggaaca
ttggaagaaGCGGGAAATCCTTGGTTTGAAACGCTAACGCCTTTGAcaac
ttggccatcgctccttaACTCattagatgttttttttaatcataaaaatg
tttcatttatcTCAACTACACGCTAGTACGTTTTACAGCAGTTCCCAATC
CTGCTTAAACAATTTTGGTCTTGATCTATAACGTGAAATTTATTTTAAGG
GAGTCACTCAAGGACTTTGTTATTCAGGATTTTGCAAGATACAAACAACA
CAATGTGAAACATTGTGGGGAGAAAGTAAGTCCGCTAATCATATGGTTGT
GACGAAACTATCATATCTGTTAAAGTTGATTTGAAAAAACCCTAGCACTG
TATCTCTCGTGTCAAACCAGTAAATgtttaaatgtttctttttttaatta
tttgcgTTGATATAACTTAAAAACGTGTTGTTTActcacaaaatttgaaa
attcattattcttTTCTCTTCGCACTAGCGGGCGCCAAAGCAGAGAATCC
ATGTTTCAACGCCAACGTCGATGGGGACGGCTTTGGTAACTGCGGAACCA
AAGAAAACGGAGATCATATTCCTTGCTCAGAAACGTAAGTTTATAACTTC
CTTTCAAATCACCGCATGTTCACGTTTACGTTGGTTAAAAAAACCGTATT
TGTTTTTTGAGCGACGTTTGACCCATTTAATACTGTTTTGAGGAATTTTT
TCGAACTGTTCTAACCCTTTTCTTTCTTCTGTTTTTTCTGCAGAAACAAG
CTTTGTGGAAAGATTCAATGTGACAGCAAACCAGGAACTAGTCTACCGAG
GTTTCCGAAGATCGGAAGTAACCGTGCGGTGAAGATCACAACGTATTACG
TCGGTGGGAGATCCTTCGACTGCAGGTAAAGAATTCATATCTACTTCAAC
TGCTTACTTTTAAGTTACTAAACATACGTTTACAACAACATAAATTCATG
GAacatttcttttgatattttaaggTTTATGTTAGGTCTacgttttagat
tttttttgacNTTACTTTTAAGTTACTAAACATACGTTTACAACAACATA
AATTCATGGAacatttcttttgatatttttttggacaTTTTAGGGTTGTG
AAGATGGATTACCCGAAGAATTTAGATGATCCAACGATGACTTTCGATGG
AACAAAATGTGGTGACAATTCTGTAAGATTTTTCATATCATGGAACGTtc
agttttttgatttttgaatccaACAATAGCTCAAATACTAAAACTTTGTT
CTGATTTCAaatgttttagataaaaaatttacTTAGCCGattggcttttc
cagaaaaaaatcgtataccccctgttgagaaGGTCCATCCTTCtatggct
ggaaatgctgtaccCCCCTGGAACTCCAGGTAAATTCAggcttaaacccc
tctggaattatGAATTTtcgtaggatttaaaaagctacccatggaattcc
agttatttttgacagatttttgtatctccctatggaattccaccACATAT
GAAACCTTGCTCCCTTGGAACGAAAATAGACCTcatcaacagggggtata
cggttttctTCGGGAAAAGCCCAACGAGAACTCCCATAATCACACTGTAA
TTCATTTAATTGAATGATCTTCCACCATCCTTGGATATTTTGAAGTACGC
AGAggttattttgatgttttaggTCTGCATCAGCAACAAATGTGTAAACA
TTAATTCATTACCTCATCGGAAGACGTGTGAACCAGGTCGATGTAAAAAT
GGAGGGGTAAGTAAAAAACAGGTCGTATTTTTAACAAGCTATTAAATGAA
CGCAACAGAGACTTTTCCTTTCATTCTTCTACAAGACCTGGTTGATTTCA
TAATGCCCGTTATACTGGATTTATCCTTCGGTCCAATTGATTTCATTATC
GAGGTTAATAATCAAAACtagaattattttcaatttttgatttNTCGGTC
CAATTGATTTCCTTATCGAGGTTAATAATCAAAACtagaattattttcaa
tttttaattcagGTTTGTAACAGTAACGGAAATTGTCACTGCCCGAATGG
ATGGGCGTGCCCGTATTGTAATGTGACCGGTATCGGAGGGAGTTTGGATT
CCGGACAAGGATGTTTTAAAAACGAGACAGACGGAGGTGAAGGTGGAGGT
ACACAAATTTGAATTTAGACGGAAATGTTCATTTTGATTGAAGCCAGTGC
AACTTTCTAATTGCTTAAAAGGCATTATTTTGAGCTGAATACACTTTCTC
AATCCCAGTAACCACGAAAATGATTCTTATAGGGAGGGGTAACTAAACTC
TTGCACACTGTCTTCATACAAAAgtttccattgtttttttctatGGCAGG
AGAAGGTGGCGGGGAAGGCNGCTGGAAATGCTGTACCCCCCTGGAACTCC
AGGTAAATTCAggcttaaacccctctggaattatGAATTTtcgtaggatt
taaaaagctacccatggaattccagttatttttgacagatttttgtatct
ccttatggaattccaccaCATATGAAACCTTGCTCCCTTGGAACGAAAAT
AGACCTcatcaacagggggtatacggttttcttctggaaaagcccaacgA
GAACTCCCATAATCACACTGTAATTCATTTAATTGAATGATCTTCCACCA
TCCTTGGATATTTTGAAGTACGCAGAggttattttgatgttttaggTCTG
CATCAGCAACAAATGTGTAAACATTAATTCATTACCTCATCGGAAGACGT
GCGAACCAGGTCGATGTAAAAATGGAGGGGTAAGTAAAAAACAGGTCGTA
TTTTTCACAAGCTATTAAATGAACGCAACAGAGACTTTTCCTTTCATTCT
TCTACAAGACCTGGTTGATTTCATAATGCCAGTTATACTGGATTTATCCT
TCGGTCCAATTGATTTCCTTATCGAGGTTAATAATCAAAACtagaattat
tttcaatttttaattcagGTTTGTAACAGTAACGGAAATTGTCACTGCCC
GAATGGATGGGCGTGCCCGTATTGTAATGTGACCGGTATCGGAGGGAGTT
TGGATTCCGGACAAGGATGTTTTAAAAACGAGACAGACGGAGGTGAAGGT
GGAGGTACACAAATTTGAATTTAGACGGAAATGTTCATTTTGATTGAAGC
CAGTGCAACTTTCTAATTGCTTAAAAGGCATTATTTTGAGCTGAATACAC
TTTCTCAATCCCAGTAACCACGAAAATGATTCTTATAGGGAGGGGTAACT
AAACTCTTGCACACTGTCTTCATACAAAAgtttccattgtttttttctat
GGCAGGAGAAGGTGGCGGGGAAGGCGGTGGAAAGGGCGGACAGGGCGGAA
ATTCAGGAGAAGAAACAGACGAATACCTAGTTTACTTGTGGCTCCTCCTG
ATCCCCGTCGTCATCTTGGTCGTGGTCCTTCTTATCCTCAAGAAAGATGT
CATCTGCAAAAAGACCAATCCTAAGCGGCAATGGAGGTTTGTCTTTCTCT
GAAGGCTTCTTTTTAATCTTTCACATACACAGTCAATACTGCGAATGTTA
ATTTGGTTTTATTTCAGACTTggttttaatatatttttttcattacaTAC
ATCAAACTCAGCAATAAAACTTCCCTTACTAATTTTCATATGcaacattt
tttctttgtagAGTTTCGGCAAGTGATGGTGGGGCATACGGCTCCAATCA
AACTGGCCAAAAAATAAACACCGTCAAAGTTCAAGAAAATGATCATTCAG
AGCATTTCGTCAAAAATCCGTACGCTTAAGACTTGCAGATGGAAAAGATG
TTTTCTTCAGGACAAACTCTTGTTACAAGTACCATTTTATTACAGAGCTT
TAAGTGACGGAAccattcttttataaaaaattttggacATTGTTTTAAGA
AATTTAAGTGATTTCAAAATCACGATTAGGGATTACACGAGAAATCCCGC
TCAAATCAGATGTATTCATTTAAAAGATCAATGCGAccataacttgaaaa
ttttctgCGATTTAGTTTAGTTTAGCTATCAGTTTGTAAATATCTAGTTT
TAGAATTTTCATAGATTTTATACCTTCGGtgtttgaatttcttttcaaga
gATATTTTAATCTtattgtaaattattttgaattataatcaagttataat
ttcaaaaatcttaacaAACTATTTTCTTCATTGAGCTGCTTTGGTGCCCT
ATGAACAGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013464	XLOC_013464	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000468	supercontig	sc0000468:148890..153448 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.069038	0.0352675	0	0	0	0	0	0	0	0	0	0	0	0	1.68241e-06	0	0	0	0	0	0	0.681794	3.72017e-10	0	0	0.00227751	0	0	0.121902

Blast

[Close]

BLAST of TCONS_00023971 vs. Swiss-Prot (Human)
Match: ADA19 (Disintegrin and metalloproteinase domain-containing protein 19 OS=Homo sapiens GN=ADAM19 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.332e-28
Identity = 76/188 (40.43%), Postives = 95/188 (50.53%), Query Frame = 1

Query:   31 NRFCKIQTTQCETLWGETGAKAENPCFN-ANVDGDGFGNCGTKENGDHIPCSETNKLCGKIQCDSKPGTSLPRFPKIGSNRAVKI-TTYYVGGRSFDCRVVKM----DYPKNLDDPTMTFDGTKCGDNSVCISNKCVNINSLPHRKTCEPGRCKNGGVCNSNGNCHCPNGWACPYCNVTGIGGSLDSG 576
            N  C     QC+ LWG     A + CF   NV GD FGNCG   NG+H  C+  +  CGKIQC S     L        + AV I TT  + GR   CR   +    +   ++ DP +   GTKCG N +C   +C N  S    + C   +C   GVCN+N NCHC  GWA P+CN  G GGS+DSG
Sbjct:  515 NGMCLTYQEQCQQLWGPGARPAPDLCFEKVNVAGDTFGNCGKDMNGEHRKCNMRDAKCGKIQCQSSEARPL-------ESNAVPIDTTIIMNGRQIQCRGTHVYRGPEEEGDMLDPGLVMTGTKCGYNHICFEGQCRN-TSFFETEGCG-KKCNGHGVCNNNQNCHCLPGWAPPFCNTPGHGGSIDSG 693

The following BLAST results are available for this feature:

BLAST of TCONS_00023971 vs. Swiss-Prot (Human)

BLAST of TCONS_00023971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADA19	1.332e-28	40.43	Disintegrin and metalloproteinase domain-containin...	[more]

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TCONS_00023971 (transcript) - C. hemisphaerica