TCONS_00023985 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023985
Unique NameTCONS_00023985
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023985 ID=TCONS_00023985|Name=TCONS_00023985|organism=Clytia hemisphaerica|type=transcript|length=571bp
TAGAAAAGAAGTTGAGGGAAAACAACACAGAAAGTGCAGAGGGCTCACAA
CAAAAGGGTGCAGAGGCAAAACCAAAAAGTAAAATTGATTATGCAAGAAA
CTTTCCATTGTCAGAAGAAAAGGGCAATGCTGCTTTTGTAAAGATGTATT
CCAAAACAACTAGCTTGAAATTAAACGATGTTGCTGAATTCATTTGTATC
CTTTCTGTTGATCCACATTTTGCTCAAAGCTCAATGCAAGAAGAAATGGA
AACAAACGAAGTAACATGGCATGAGTTTAACATGGAAGAGGATCGCGCAC
ATTGCCCACCCCCTTCACTTGTACCCAGACTCCATTGTTTATATTACAAC
AAGTTGGAGGAATTAAATCCAAACGTCAGAAACAATCATACAGACTACGA
ATGTGCCAGTAAAGAATTGACATCCATTCGAGCAGATCTCATCCAAACAC
TCAAAGGGCTTCTTGGAGGAGACGGAATTGCTGCAGAATATCTCCTACTT
CACCTCATATCGTCTGTATATGGTCGAGTAGGGGCAATGTGTGTTGGAAA
ATTTGCACTAAACTTGTTCAA
Run BLAST on NCBI

transcript from alignment at sc0000468:216854..220060-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023985 ID=TCONS_00023985|Name=TCONS_00023985|organism=Clytia hemisphaerica|type=transcript|length=3207bp|location=Sequence derived from alignment at sc0000468:216854..220060- (Clytia hemisphaerica)
TAGAAAAGAAGTTGAGGGAAAACAACACAGAAAGTGCAGAGGGTAAGAAT
TTTCAAACTTCCTTGATAATAATAGTTAATGCATTACTGATTCGGTGTTA
TGTAATCTTTCAATCTTCACTAAACAAATTTTTATCCTTGCAGGCTCACA
ACAAAAGGGTGCAGAGGCAAAACCAAAAAGTAAAATTGATTATGCAAGAA
ACTTTCCATTGTCAGAAGAAAAGGGCAATGCTGCTTTTGTAAAGGTACAT
TATTATTAATATTGTATTACAGCAATTTTCGAGTTGCTAAATGTTCTCTA
ATGCGTAGATAGTCTTGTGTTGGGGCTCCTTAGGAGATGATTAAGATTAA
GATTAAGATTAAGATTAAGATTATCTACTCAGGGTATTTTTCAAGCATTT
TTTACCACCGTTTTGGTCCGAAAAATTAAGCTTCGATGCAGTGGTTTTAA
ATGTGGTTAACCATGGTTTGGCAAGGAAGAAAATTTTTGCCCTGTGAACG
ACTTTGATAGGTGTTTTCATGTGTCTATAAAATAGCCTAGAAATTCTAAC
TTGGTTTAAAAAAATAACCTTGCTACTTGTTAGGCTCAGTGCAATATATC
AAGAAAACTCTATCTTTTGTGTTTTGTAGATGTATTCCAAAACAACTAGC
TTGAAATTAAACGATGTTGCTGAATTCATTTGTATCCTTTCTGTTGATCC
ACATTTTGCTCAAAGCTCAATGCAGTAAGTCTTTATTGAGAACAGTGTCT
AGGATTTACTCTTGAACACCTTACAAATAATTTGAAATCCAGTCTAAAGG
CTGGTCTCCACTTTCGCGCGACATGAGCGAAATCTGTTGATGTTTTTGTA
AGCTCATTGGTCGGTTGAAAAATGAGGCAATTTTCAAAATTGACGTAACG
GTTGAAAAAACTTGAACTTCCTGAACTTTTTTTTGTTTGCCCGAAACTCT
TTTATGACGTAATCTTTTCTTTAGGCAAAAAAGGTTGAGAAAAGACCTGT
CGCCCAATTCGCTTGAAAGTGAATACCAGCCTTAAAACCCTAAAAATAAT
TCTGTTTAATTCCTCTGGGACTTAATATTCTACTTTTTTAACAGCCTAAA
TACAAAAGTCTACTTGAACAGTTATCATAATAATCATAAAGATCTTTTCA
TTAATAAAATAAGAGCCGAAGACTATTTTCGAAACCAAATTTAAATTACA
GAGAAGAAATGGAAACAAACGAAGTAACATGGCATGAGTTTAACATGGAA
GAGGATCGCGCACATTGCCCACCCCCTTCACTTGTACCCAGACTCCATTG
TTTATATTACAACAAGTTGGAGGAATTAAATCCAAACGTCAGAAACAATC
ATACAGACTACGGTATGATATTCGTCTACGTCATAGTTATATGGAAAAAA
ATTGAAAAAAGTTAACTTTAATCATTATTTTCTAACAAACAAATAAATTA
TATTTCTTTTGCTAAAAGAGATCAATTCACCTTTTCGACCATAGCCGCCA
ATTGCTGCGCTGACATTTTTTTTTTTATTTTACCACCCTAAAACCATCCC
AGTCTGACAGTGCGCACCTATAGACAACAGAAAAAGGTGTAAAAAAAGGA
TTGGATCGAGTTTAGGGGGATAATTAAATAATAAAGTGGCACACGACTGA
CCTTGGGACTATGGTCGAAAAGGTTTATTCCATAATTTTACTTGAACCAA
TTGAAACCACATTGCTACCTTTTTAATGCAACATAATTGTCGATTATCTT
TGAGGGAGGGGGAACTGAATCCTTTAGTTTAGAAATCCCAACCTCCTATA
GATCATTAAATGTTTTCCTGCCAAATAAATCGAAAGTGTTGCTCTGTCGC
TCCAATCAACGCTTGTGCTAAAAGTTTCTAGTATTCAAAAGATAATGTTC
CTATGCAAACTTGTCTAATAATCTAATCCATGTCGAAAAGCTAGCATGCA
TAAATTAGAATGGTAAGTATAATAATTCAGAAACATAACACCATTCCCAA
AATATTACATTTTAACTTGATTGTAAATTTCTTCTATATCATTGAAGTAA
TGAAAAGGTTTAGAAAACAAAAACCTTATCAAAATATTTTCTGTGATGAG
AATTTGTGTTACCAACTTTTTAGCACCCATCCCCATGAATAATAAATGTT
AATTTCTTTTCAATAACATGTCTGGAGACTTCGATTTGTAAGTTGAAACC
TTTTTCTTTGTGTTCATGAAGATGACTCTTTAATTAATAATGATTTGGTT
GTGTCTACAAATGAAATGTTAAAAAACTTTCAAAAATATTCTGTTTTCCT
CTTAGATTATCTTTCCAGGAAAGAGTAAAAAAAACAAAAAATATTCAAAA
ATAGAACAAAAGGGTATTTTAGACAAGCTTGGTGACTTTTGTTTTTTTGG
CACCAAATCTAGAAGAGTTGATCCCTAACTCGTTTATAAATTTCAAATCA
ATATGAAAAATTCTTGGCTTTGCGTGTATTGATGGTGATTGGTCAAGTAA
CATATTATTCATTTTTTAGAATGTGCCAGTAAAGAATTGACATCCATTCG
AGCAGATCTCATCCAAACACTCAAAGGGCTTCTTGGAGGAGACGGAATTG
CTGCAGAATATCTCCTACTTCACCTCATATCGTCTGTGTAAGATCTCTCT
TTAATTTGGCATCTCCCTACCTTGAAAATAGCAGTCTGCTCTCACTTGTG
GGCATCCAGATAGGCCTAGAAGTCCACAGCCCTCTTGATTTTCCTGCTCT
TTAATTGAGGCTAATATCAAGTATTTTGATTGTCTACCACTCAAACAACA
CACTAAAATTGCCTTAAAGATTGAATTACATTTTAATTCCTTCTTTAAAA
ATCAGAAGTAAAAAATTGATTCACAATTTTGACCTGAAGAGAGGGATCTT
ACTTATCACACTCAATCAGTTTTTGGAGGTGCAATTTTCCTTTTAAACAC
TTAAAGAAAGGAGGCGGTTCGAATTATGTTTTATCATAATTCACCATAAG
TAACTGCTATTGAAAGAAATACTTTTAGTTTGAATTTTTTGTCAGCGTCA
ATACTCTGGTTTATTGCCTGTATAATGTACTATAATACTAATATTGAGAA
AAAGAGAATCTTGTAGAAATTTGTTAATGAATTACCGTTTTGCTTATTAC
TAGATATGGTCGAGTAGGGGCAATGTGTGTTGGAAAATTTGCACTAAACT
TGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013468XLOC_013468Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023985-exon-sc0000468-1575043694:220019..220060TCONS_00023985-exon-sc0000468-1575043694:220019..220060Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1575043694:219817..219917TCONS_00023985-exon-sc0000468-1575043694:219817..219917Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1575043694:219337..219431TCONS_00023985-exon-sc0000468-1575043694:219337..219431Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1575043694:218699..218859TCONS_00023985-exon-sc0000468-1575043694:218699..218859Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1575043694:217424..217541TCONS_00023985-exon-sc0000468-1575043694:217424..217541Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1575043694:216854..216907TCONS_00023985-exon-sc0000468-1575043694:216854..216907Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1510915933:220019..220060TCONS_00023985-exon-sc0000468-1510915933:220019..220060Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1510915933:219817..219917TCONS_00023985-exon-sc0000468-1510915933:219817..219917Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1510915933:219337..219431TCONS_00023985-exon-sc0000468-1510915933:219337..219431Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1510915933:218699..218859TCONS_00023985-exon-sc0000468-1510915933:218699..218859Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1510915933:217424..217541TCONS_00023985-exon-sc0000468-1510915933:217424..217541Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1510915933:216854..216907TCONS_00023985-exon-sc0000468-1510915933:216854..216907Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1491911889:220019..220060TCONS_00023985-exon-sc0000468-1491911889:220019..220060Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1491911889:219817..219917TCONS_00023985-exon-sc0000468-1491911889:219817..219917Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1491911889:219337..219431TCONS_00023985-exon-sc0000468-1491911889:219337..219431Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1491911889:218699..218859TCONS_00023985-exon-sc0000468-1491911889:218699..218859Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1491911889:217424..217541TCONS_00023985-exon-sc0000468-1491911889:217424..217541Clytia hemisphaericaexon
TCONS_00023985-exon-sc0000468-1491911889:216854..216907TCONS_00023985-exon-sc0000468-1491911889:216854..216907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000468supercontigsc0000468:216854..220060 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5599	10.2388	6.74107	8.36282	0.31018	0.179202	1.05324	0.142644	0.953295	1.46246	3.80546	1.77863	1.54372	2.32271	0.644147	0.909435	5.01933	3.19341	0	0.453002	0.732798	1.36565	1.03683	3.57215	0	0.559423	0.0300032	1.94057	1.72092	0.815703
Blast
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BLAST of TCONS_00023985 vs. Swiss-Prot (Human)
Match: MCMBP (Mini-chromosome maintenance complex-binding protein OS=Homo sapiens GN=MCMBP PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.256e-29
Identity = 69/172 (40.12%), Postives = 92/172 (53.49%), Query Frame = 3 
Query:   99 NFPLSEEKGNAAFVKMYSKTTSLKLNDVAEFICILSVDPHFA--------QSSMQEEMETNEVTWHEFNMEEDRAHCPPPSLVPRLHCLYYNKLEELNPNVR---NNHTDYECA-----SKELTSIRADLIQTLKGLLGGDGIAAEYLLLHLISSVYGRVGAMCVGKFALNL 566
            NFPL  EKG A  VK+Y      K+ND+ E   ILSVDP  +         S++ + ME  +        EE R H PP SLVPR+H +   KL+ +NP +    N      C        EL+ +RA+L+  L   L GD +AAEYL+LHLIS+VY R   + +GKF +NL
Sbjct:  228 NFPLPGEKGPACLVKVYEDWDCFKVNDILELYGILSVDPVLSILNNDERDASALLDPMECTDTA------EEQRVHSPPASLVPRIHVILAQKLQHINPLLPACLNKEESKTCKFVSSFMSELSPVRAELLGFLTHALLGDSLAAEYLILHLISTVYTRRDVLPLGKFTVNL 393
The following BLAST results are available for this feature:
BLAST of TCONS_00023985 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCMBP4.256e-2940.12Mini-chromosome maintenance complex-binding protei... [more]
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