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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023986 ID=TCONS_00023986|Name=TCONS_00023986|organism=Clytia hemisphaerica|type=transcript|length=1642bp CTTGTAAGCATCTTCTATGTTAATTATTTCACCAGTTGCTGCAGCATTTC CTGCAATTCCTACTCCAAATGGTATAATTATAGCATCTTCAATTGGTTTA ACAGCCTCTTCCACAGTGCAATCAGCAGTGACATCAAACAATCTAGATAT TAGATACTTTCTATCTTTGTGTCCTTTGCACAGAAAGAGTGATGATCTAT CACACTTTGTTAGTACTGAAACATTAACTAAAATTTTATGAGACAATGCA TCAACATCCAATTCATGAGCAATGTCTCTGATTAGTTCCATAAAAAGATC TTTTTCATTGAGAGCAGAAAGCTCTTCAAATGTCTTCCTTTTAGGTCTAA TTGGAGGTATTCCAACATTACCAACATTGAGATTATTAGCACTTCCATGA CCAGAAGTTCCGCTGAGAAATCGGTTAAGTCTAACATTTGATGTAGCTGT TAGTGGTCTGAGAACCAGATCTGTTGAAGATCTTGAAATTTTGTTCACAC GATTTACATCTGGTACTGAAATAGCTCTTGATCTTTGCATAACCCATGTT TCCACAAGTTTTGGTGATGCATGAGTTAAAAAGTACTCTTTTGCGAATTG TGGATTATTCCTTAAAAATTCTGTCACCTCCTCCTTGGTTGGCATTCTTA AATCAAATTATAATCATACAAACCATTATTTAGCCAACCATTTTTAACAA TAATAGTTGACAGTGAGTTTACATCCTGAAACTCGCTGCACAACCCCCAA AACCTCATGGGCAACAAATTGAGGCTGCAATATTCCCGGGTTACTGGAGC AACACAACCGCGCGGTGACGTCACTTTGTTTACATGTTGTAAAAACACAT CCAATGAATGAAGAAAACTCCAATAATACCCATACAGTGAATAGACTTTA CGCGggaaaagaataaaaaacttgatTTTAGTGAAAGCCAACAGCGCAGC CTAGCAGTGAGTAGTGAGTAGCGAAAAAAATCTTGCCTCCTCCTTCGCAC TACACGACCAATCAACAAGGTGTTGCTTACTTCTGTTCACATACCAAAAT TTGGATACTTATTCACagacatggaaaaaaagaatCCTACAGTAATTAAA GAACCAATTTCGCTGATCAAAAGTCTTCTAGATGAGCACCCAGAAATGTT GAAAGATCTTGCTAAAGTTGGCGAATATGTTAAAGCTCTTTTAGAAGATG AAACAAAGATACCATGCATCAATGAAACTCAACTTGAAAAAGTTCAACCA AATACTTTGGTCAAATTTAGAGGAATGGTACAAGATATGCTTGACCCAGA ATTTTATTTAGGCAAATATTTCACCAGAAATACCAATACTGGAGAAAAGA CCACTCGAATAGGCTGCTTTACAGATACAGGGTGTAAGCAGTCACCACTT GAAATTATTGATTTCGATGCAGAGGAAAATGTAACATTAGAAAGACAAAC TTATTACTGTGTTCCAGTGCCTGGAGAGAATCAATGGATTAAGGATTCAT ATAAACAGGCTTTCAACAATGACCCTGTCATAATGcaagaagaaagaaat aacGCTCAAAAAAGACGACTGGATGAGGACGAAATAGTCGTGAATGAGGA AAAAATGGAAACAGAAATATCAAGCAAGACCTCTAATAGTAT Run BLAST on NCBI transcript from alignment at sc0000468:220204..227039- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023986 ID=TCONS_00023986|Name=TCONS_00023986|organism=Clytia hemisphaerica|type=transcript|length=6836bp|location=Sequence derived from alignment at sc0000468:220204..227039- (Clytia hemisphaerica) CTTGTAAGCATCTTCTATGTTAATTATTTCACCAGTTGCTGCAGCATTTC
CTGCAATTCCTACTCCAAATGGTATAATTATAGCATCTTCAATTGGTTTA
ACAGCCTCTTCCACAGTGCAATCAGCAGTGACATCAAACAATCTAGATAT
TAGATACTTTCTATCTTTGTGTCCTTTGCACAGAAAGAGTGATGATCTAT
CACACTTTGTTAGTACTGAAACATTAACTAAAATTTTATGAGACAATGCA
TCAACATCCAATTCATGAGCAATGTCTCTGATTAGTTCCATAAAAAGATC
TTTTTCATTGAGAGCAGAAAGCTCTTCAAATGTCTTCCTTTTAGGTCTAA
TTGGAGGTATTCCAACATTACCAACATTGAGATTATTAGCACTTCCATGA
CCAGAAGTTCCGCTGAGAAATCGGTTAAGTCTAACATTTGATGTAGCTGT
TAGTGGTCTGAGAACCAGATCTGTTGAAGATCTTGAAATTTTGTTCACAC
GATTTACATCTGGTACTGAAATAGCTCTTGATCTTTGCATAACCCATGTT
TCCACAAGTTTTGGTGATGCATGAGTTAAAAAGTACTCTTTTGCGAATTG
TGGATTATTCCTTAAAAATTCTGTCACCTCCTCCTTGGTTGGCATTCTTA
AATCAAATTATAATCATACAAACCATTATTTAGCCAACCATTTTTAACAA
TAATAGTTGACAGTGAGTTTACATCCTGAAACTCGCTGCACAACCCCCAA
AACCTCATGGGCAACAAATTGAGGCTGCAATATTCCCGGGTTACTGGAGC
AACACAACCGCGCGGTGACGTCACTTTGTTTACATGTTGTAAAAACACAT
CCAATGAATGAAGAAAACTCCAATAATACCCATACAGTGAATAGACTTTA
CGCGGGAAAAGAATAAAAAACTTGATTTTAGTGAAAGCCAACAGCGCAGC
CTAGCAGTGAGTAGTGAGTAGCGAAAAAAATCTTGCCTCCTCCTTCGCAC
TACACGACCAATCAACAAGGTGTTGCTTACTTCTGTTCACATACCAAAAT
TTGGATACTTATTCACAGACATGGAAAAAAAGAATCCTACAGTAATTAAA
GAACCAATTTCGCTGATCAAAAGTCTTCTAGGTATGAACATAGATAGGAA
TTATTATTTTTCGTTTGGTTATTATTTTTGTGCTGTTTGGAAAAAAAGTT
GATTGTATGAACTTGTTTCTTTTTTTGAATCTTTCTCTCTGTTTTGAATA
TTTTTTTCTTTCCTAATCATATTTTCAATTTGAAATATATTATAAAACAT
TACAAGGGGAATAGACCTTTTTCCAAAGAGGCCACCCTGTTGAATATTTA
TGTGTAGTCCAGCAGAAAAACAATGATAAAACTATGCATAATTATCACAA
TATGCATGATACAGTAATTATGCATGGCTCTATCATTTTTTTATGGCTGG
ACTACATAATTATTCAACAGGATGTCCTCTTTAAAAAAAGGTCTATAGTT
TTTTAGCCTGTCTTTGACCATTCAGCAGGCAGGGAAAAGACCCTGCCGAC
GCACCGGACTGTCCAGTGTATTTGTCTGGTGACAAAAAGTATCCTTTTGC
TACACCGGACGCAATAAGTCCGGTGTCAGTCCGGTGTTGCATACAGGGAA
TTTTGGACGCCGGACATTTATGAAACAAAAAATTAAGAAACACCGGACGC
ACCGGACTGGTCATGTCCGGTGTTTTGATTGTCCGGTGGGAAAAAATATC
CTTCTCCAACACCGGACATCTGTCTTCCTTAAGTCCGGTGTAGAAATTGT
CCGGTGGTAAAAAAAATTCTCTTTTACACCAGATTTTCGCGTGTCCGGTG
TTAAGTCCGGTGCGTCGGCAGGGTCCTGCAGGGAACTCAAGCAAAATAAA
GGCCGAGGACTACCTCGACCCTGTGTCCAGAAGGTGTCAATCAAAGGAAT
CGAACGCCGCATCAATTGAACACAATGAACTCAATTGAATAATTGCAATT
CCATTGTCGAACGCAATCGAATTACAATAGAATATTACCAAGGATTTGCC
GTTCGATTGTATTTGATTAAGTCTGATTACGTTCGATTGATTCAATTGTA
TTAGATTTTATTCGCTTTCGTACGGTACTTAAGCGCTCAGCGGCCCACGC
TAAAAAGCTTTAAAACGGAGTGATCCAATTAAATTTAATCGCGATCAAAC
CAATTTTTAGAGTATGGCAGAAATCATTGAGATCTCCAGGGCAGAGACTG
CTCACTTTTCAAGGGCAGGGGCAAAATTTTGATAATATCTACAATTCAGG
GGAAAAAATCATTGAAAACTGGCTATATTTACCTGTTTTTCTAGCTTTTT
TTGTGGTGGGAAACGGATCTTAGGGGTAGAGTTTTATGTTTGAAATTTTC
CTTTGGGGCAACCATGACATGCTCTGAAAACTGGCAATCAAACTCATCGA
ACATAATCGTAATCGAACAAAATCAAAGATTAATCGAATATAATTGACAA
TCAATCGAACTAATCGAGCATAGTCAACTATCAATCAAACCAATCTAACC
GTACTCGAATTCAATCGTATAGTACCCAGAAATCGGCCGGTCCATCGAGA
TTCGCTTACGTTCGACAATAAAATCACAATTATAATCGTGTTTGATTATG
TATGATTGCTTCGATTGCGATTTTTGTTCAAAGTTGTTCGATTGACACCA
TATGGCTGTGTATTCCTGGCTTTATTTTCCTTATTGATTGACGCCAGAGA
ATACCCTGGTGCTGGCCCCTTCTCAGAGGGGGAACTTCTCAAAACAATAC
GTCATAAAAAGATCTGATGTTACATAGTTACACTGCAAATCAATGGTCTC
AAATCCAGGAACAAATGAATTTTGACGTTTTGTTTTTGACTTATGTAATC
TTTCGCATAAGAAAAACAGACAATGCCAGGGTATTATCTAGCGCTATCAG
TAAGCCAAGGTCAAAACATGGGATTGTTGATAACTGGCCTGTATTTTCAC
TTACTGTTAAATCACTTTGACAACANCAAAACATGGGATTGTTGATATCT
GGCCTGTATTTTCACTTACTGTTAAATCACTTTGACAACAATTTTGTTTT
GATACTTCAACAAATTTTATCAATCAAACTTTTACCTTCCCGTAATCACA
ACCAAATGTATTTTTAAAGCATTTTAAAGGTACATAATTTGAAGAAGTTA
TTATTAACAATTTAATCACACACACTCTGCTATACATCTTGACGTCATCT
TTTTGTTTTATATTGTTTTTTCGGTGAAATAGTAACCGAATTGCCATCCC
ATGTTTTGTCCCAAGTTAGAGCTGTTGACAATACCAATTTATTGTGAAAA
AAGATAGCAAATATCTTTGGTTAAACCAAAACAATATTTTTAGTCTTTTT
AGTTATGAAAAATTATGTTTTTTTAGTTTCGCATGACAAAATTAGTGTCA
AACCTTAATGTGTTTGGTACCAATGGAAAGCTAAGGGAATTCCCCATCAG
GCCCTGATTTTGACTTTTGCATTTAATTTTTTCAGGGGGTGCAATAACCA
AAAATGTACCTAAATTTCTCTTTTTTCATCTTTAAATACCAATAATATTG
AGTCAGCCGTTATATACAAAAATCCAGGTCAGAAATACATGCAGATTGAG
CTTTCTTTTCAATCGGTTACATATTCAACTATCTTCAAAGTCAATGGCTC
AGCCAAAAGATAGGTGAAAATGGGTGGAAAATTTTCCCTGGTGCTGTCTT
TTCAAGCTCTTATCGCTATCACTGGCTTTTTCAGAAAGGTTTTGTTACTC
TTTATATCTTGACTTGTAGTCATTGCTTGAAAAATATTTACAAGTACGGT
GAGGAATGGTTTTTGCGGGTCTGTCGATGATGTTTGTTGTTGGGTCACAA
TTCAGTGATATGGTTTAGAAAAAGGAGCTAGCCTATCAGCCTATTCACAC
CATTCAAATAAATGGGATATTCTAAGATAATTTTGGTGATTAGCTGTGGA
CAATTCCTGCTCTTTTCAGCAATATGTAACAAAAAATTCCAAATCATCAG
AAAAGTAATGCATTTCATTATTTGTATTTCAGCATGAAAAATTTCATGAA
AGATTTTTCAACATCAGAAAAGTGATTGACAGATAAATTTATTCATCTGT
TGATTGTCCTGGGTGTTTAAAAGGGTGGCATCTAACTCTCCCCAAGCTTG
TAAGGAACTGTCCAGACGTATTGTTATGTTTCAATGTGTTGAAACCAATT
CTTTTGTATGATTGTGATATTTTTAATGACAGTGACTTTAATAAGTTTGG
TTCATTTGGCAAGTTGATGTTTGTTAGTGCACTTTACAGTTTCTAAAATT
GTTGTTAAAAAAATTCACACTAGTTTTTATGTTACAAGATGCTATGAGAG
AGCTTTATACATACCTGGCTAATTGGGACTAATGACTAAATTTTGACCAG
TAATCAAAGACAATGATAACTATGTGATGTTGGATGATAAACTGATAAAA
TGGCTATTCAGTACAGAGTGTTTCACTGCTTTGGGTGTAATATTAGTCAC
TTGATTTCCTCAAAAATAGGCCACACTTTTCTTTGAATTTTAACACGTTC
ATTGCTGAGCCTTTTTCAGAAATCGAAAATTCAACCTCTTGGAATTTCAT
TAAAAGTAGCTTGCATCAATTGCCTTCAAATTATATACCAATCAAAGCAA
AATTTGGTTTAATTGAAACCATAACTTCTTGAAAAAACGCTCATAAATGA
CGGTTTATTATTTGCTAAGCTTCTGTTTTTGATAAAGATCTTAACCCCTT
AATGTTTTTAAATTCTATCTTTCGATTTGAAGTATAAAAAAGTATTTAAG
ACAAATATTTCCACTATGCATAGTTNGTTTTTAAATTCTATCTTTCCATT
TGAAGCATAAAAAAGTATTTAAGACAAATATTTCCACTATGCATAGTTCA
AATTTCCCTTAACAAGATAGAGTTTGAGAGCATCATCAATACCTTTTTTA
TCATCCTAAGGACTTTAGATGCACAAGTTAAAAAACCAAAGTTTGTGACG
ACGGGAACCGTCTAGTATTTTCTAATTAAAGCACTCAAAAAAGCTGGATT
TTGACAACTGTGTTTCTATTTTTAATAACCAAGAGAGTTTGTGTCCTGGC
TCTTTCAGAAGTTTCCGTAAGAAAAATGACTTTCAAGCTCTCTCGCCATG
TTTTTTTTAAGGAAAATAAAAAAAATAAAAATATTGTGTTTTCTTAATTT
CCTTACAGATGAGCACCCAGAAATGTTGAAAGATCTTGCTAAAGTTGGCG
AATATGTTAAAGCTCTTTTAGAAGATGAAACAAAGGTATACTTTTTTACT
GCTTTTCCAAAAATATTTTAAGAGTCATTCTCTACAGACTGCTTTTAATA
ATATAAGGAAACTCCTCAGTTGGATTATTACACTTTCACTTTTGTGTTTG
CGCTTTTATATGAAATCACATTACAAAATCAAATCTACCAAACAATGACT
CAGAGCACTTCCCTAGGAGAAACAAAAGTGACAGCACTTTCTTATTTTCC
CAAGAGTAATTACTTGCAGAATTTCACAGATAATTATTCAAACAGTCTTC
TGTATTTCTCAAGGGAAGTAACCTAAAAACAATCCTATTGAAAATGCCAA
AAACAGACAGAAAGCAGAAGAATACAAAGCTGAAAGTTACAAGGAAGGTT
TTCAAGTAGTATCCAAGTCACGTGATATCCGAAAGATTCACATCGCAGTA
ATACACCTTTGTAACCATTTGCCCAGATAATATTTCAATTTTAATTGTTT
TTATGATTTATGGATTTCTAGATACCATGCATCAATGAAACTCAACTTGA
AAAAGTTCAACCAAATACTTTGGTCAAATTTAGAGGAATGGTACAAGATA
TGCTTGACCCAGAATTTTATTTAGGCAAATATTTCACCAGAAATACCAAT
ACTGGAGAAAAGGTATTTAGAAATTTATAACATGATTAAGTTTATTAGGC
AGGGCTTTTTGATCCTGAAAGATTGGCTATTTTTGTATTAAGTACCATTT
CAGTACCACGTTTATTAAAAGGTTGATGTAAACAAGTAAGATGTTCATCA
CAAGGCTCTCTTCAAAAGTAAATCATATTCTTTTTTTTAAAGAATAACTT
GGACCCAGGCTATCAAGACATATTTTAGATAGGTACATTTCTTATTGAAC
ACACTCATTTCTTTCAGACCACTCGAATAGGCTGCTTTACAGATACAGGG
TGTAAGCAGGTATTTATATTAACCTAATTTCTGTATTGTTGTCATTAATT
CAAAGCAAATCAATGTTAACCAAGGAAAACTAGAGTCTTCACTTGGCTTC
AAATCTTGTGTGTTTTTGTATAAAATTCAATAATATTGCTCAAAAACCAT
AGTAATAATCTTGCTATTTGTTTTCCTTTTCTCATAGTCACCACTTGAAA
TTATTGATTTCGATGCAGAGGAAAATGTAACATTAGAAAGACAAACTTAT
TACTGTGTTCCAGTGCCTGGAGAGAATCAATGGATTAAGGATGTATCTTT
TCACCTATTTATGCAATTTTTTACCGAAACGCAGGAAATTATGAATTTCA
AATCTTAAATGGACCTCAAAAAATTCAATATCATTATTTCCAACAATTCT
ATAATATCCTTGTATTTCCTTAACTAACAATAACTTCAAGTCATATAAAC
AGGCTTTCAACAATGACCCTGTCATAATGCAAGAAGAAAGAAATAACGCT
CAAAAAAGACGACTGGATGAGGACGAAATAGTCGTGAATGAGGAAAAAAT
GGAAACAGAAATATCAAGCAAGACCTCTAATAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00023986-exon-sc0000468-1575043694:225909..227039 | TCONS_00023986-exon-sc0000468-1575043694:225909..227039 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1575043694:221705..221781 | TCONS_00023986-exon-sc0000468-1575043694:221705..221781 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1575043694:221078..221218 | TCONS_00023986-exon-sc0000468-1575043694:221078..221218 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1575043694:220781..220822 | TCONS_00023986-exon-sc0000468-1575043694:220781..220822 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1575043694:220498..220602 | TCONS_00023986-exon-sc0000468-1575043694:220498..220602 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1575043694:220204..220349 | TCONS_00023986-exon-sc0000468-1575043694:220204..220349 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1510915933:225909..227039 | TCONS_00023986-exon-sc0000468-1510915933:225909..227039 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1510915933:221705..221781 | TCONS_00023986-exon-sc0000468-1510915933:221705..221781 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1510915933:221078..221218 | TCONS_00023986-exon-sc0000468-1510915933:221078..221218 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1510915933:220781..220822 | TCONS_00023986-exon-sc0000468-1510915933:220781..220822 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1510915933:220498..220602 | TCONS_00023986-exon-sc0000468-1510915933:220498..220602 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1510915933:220204..220349 | TCONS_00023986-exon-sc0000468-1510915933:220204..220349 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1491911889:225909..227039 | TCONS_00023986-exon-sc0000468-1491911889:225909..227039 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1491911889:221705..221781 | TCONS_00023986-exon-sc0000468-1491911889:221705..221781 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1491911889:221078..221218 | TCONS_00023986-exon-sc0000468-1491911889:221078..221218 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1491911889:220781..220822 | TCONS_00023986-exon-sc0000468-1491911889:220781..220822 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1491911889:220498..220602 | TCONS_00023986-exon-sc0000468-1491911889:220498..220602 | Clytia hemisphaerica | exon |
TCONS_00023986-exon-sc0000468-1491911889:220204..220349 | TCONS_00023986-exon-sc0000468-1491911889:220204..220349 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000468 | supercontig | sc0000468:220204..227039 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR029016 | GAF_dom-like |
Blast
BLAST of TCONS_00023986 vs. Swiss-Prot (Human)
Match: MCMBP (Mini-chromosome maintenance complex-binding protein OS=Homo sapiens GN=MCMBP PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 1.241e-25 Identity = 54/119 (45.38%), Postives = 74/119 (62.18%), Query Frame = 3
Query: 1164 KVGEYVKALLEDETK---IPCINETQLEKVQPNTLVKFRGMVQDMLDPEFYLGKYFTRNTNTGEKTTRIGCFTDTGCKQSPLEIIDFDAEENVTLERQTYYCVPVPGENQWIKDSYKQA 1511
KV EY K L++ +P +NE L ++PN+ VKFR M+QDM DPEFY+G Y T N NT G + D + P + +D ++ N TLERQT+YCVPVPGE+ W+K++Y A
Sbjct: 31 KVIEYFKEKLKENNAPKWVPSLNEVPLHYLKPNSFVKFRCMIQDMFDPEFYMGVYETVNQNTKAHVLHFGKYRDVA-ECGPQQELDLNSPRNTTLERQTFYCVPVPGESTWVKEAYVNA 148
The following BLAST results are available for this feature:
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