TCONS_00023987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023987
Unique NameTCONS_00023987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023987 ID=TCONS_00023987|Name=TCONS_00023987|organism=Clytia hemisphaerica|type=transcript|length=623bp
GGCATGTAGCTGGGTTGACTCGATCGGGTCATCTGGGTTGTTAACACAAT
AGTTCCGGTCTATAATGACTTTACCGGCTTCTTTAAGCTCGTCGATAAGT
TGGTTCCACTCCTTAGATAGGTGGTCGGGCAATTGTTGATCCCATTCTTC
GACTTGCTCACACGTTTTACGAaacaaagttttcattttcacgATAAGAG
GGTTGATCAAACCCAGAGGATCATAAACGGATGCGATCGATGACAGCATA
GTACGTTTGGTAGCTTCTCGAACAAAGTTTTCAGCAATGTTTTTCAtgtc
aaaaacaattttgtcaCCTTGTTTGTTCCAATCAAGTCCCAATACTTTAT
CATCAGAAGCGACTTGTTTCTCCTCATCAGGATAGGATTCTTTGACTAAT
TGCTCAAGTTCTGGCGAGTTGGACTTGAATTTACGTAAGTTGAAAACACC
GGTGCTTAGACATTCCTTAGCTTTCTTGTAGAATGAAAAAGCTTCAGCAA
CAGTGTTCTTACCGGCGTTTAAATCGTCGACGTGTAATGAAGATAGTAGA
GTATCAGCGAATTCTGGGTCGTTTTCGCGAAACGGTGAAATGTGTTTGAT
AAGCGTAGCAGCGAGTAAAAACG
Run BLAST on NCBI

protein sequence of TCONS_00023987-protein

>TCONS_00023987-protein ID=TCONS_00023987-protein|Name=TCONS_00023987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
FLLAATLIKHISPFRENDPEFADTLLSSLHVDDLNAGKNTVAEAFSFYKK
AKECLSTGVFNLRKFKSNSPELEQLVKESYPDEEKQVASDDKVLGLDWNK
QGDKIVFDMKNIAENFVREATKRTMLSSIASVYDPLGLINPLIVKMKTLF
RKTCEQVEEWDQQLPDHLSKEWNQLIDELKEAGKVIIDRNYCVNNPDDPI
ESTQLHA
Run BLAST on NCBI

transcript from alignment at sc0000468:65743..66365

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023987 ID=TCONS_00023987|Name=TCONS_00023987|organism=Clytia hemisphaerica|type=transcript|length=623bp|location=Sequence derived from alignment at sc0000468:65743..66365 (Clytia hemisphaerica)
CGTTTTTACTCGCTGCTACGCTTATCAAACACATTTCACCGTTTCGCGAA
AACGACCCAGAATTCGCTGATACTCTACTATCTTCATTACACGTCGACGA
TTTAAACGCCGGTAAGAACACTGTTGCTGAAGCTTTTTCATTCTACAAGA
AAGCTAAGGAATGTCTAAGCACCGGTGTTTTCAACTTACGTAAATTCAAG
TCCAACTCGCCAGAACTTGAGCAATTAGTCAAAGAATCCTATCCTGATGA
GGAGAAACAAGTCGCTTCTGATGATAAAGTATTGGGACTTGATTGGAACA
AACAAGGtgacaaaattgtttttgacaTGAAAAACATTGCTGAAAACTTT
GTTCGAGAAGCTACCAAACGTACTATGCTGTCATCGATCGCATCCGTTTA
TGATCCTCTGGGTTTGATCAACCCTCTTATcgtgaaaatgaaaactttgt
tTCGTAAAACGTGTGAGCAAGTCGAAGAATGGGATCAACAATTGCCCGAC
CACCTATCTAAGGAGTGGAACCAACTTATCGACGAGCTTAAAGAAGCCGG
TAAAGTCATTATAGACCGGAACTATTGTGTTAACAACCCAGATGACCCGA
TCGAGTCAACCCAGCTACATGCC

Coding sequence (CDS) from alignment at sc0000468:65743..66365

>TCONS_00023987 ID=TCONS_00023987|Name=TCONS_00023987|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0000468:65743..66365 (Clytia hemisphaerica)
TTTTTACTCGCTGCTACGCTTATCAAACACATTTCACCGTTTCGCGAAAA
CGACCCAGAATTCGCTGATACTCTACTATCTTCATTACACGTCGACGATT
TAAACGCCGGTAAGAACACTGTTGCTGAAGCTTTTTCATTCTACAAGAAA
GCTAAGGAATGTCTAAGCACCGGTGTTTTCAACTTACGTAAATTCAAGTC
CAACTCGCCAGAACTTGAGCAATTAGTCAAAGAATCCTATCCTGATGAGG
AGAAACAAGTCGCTTCTGATGATAAAGTATTGGGACTTGATTGGAACAAA
CAAGGtgacaaaattgtttttgacaTGAAAAACATTGCTGAAAACTTTGT
TCGAGAAGCTACCAAACGTACTATGCTGTCATCGATCGCATCCGTTTATG
ATCCTCTGGGTTTGATCAACCCTCTTATcgtgaaaatgaaaactttgttT
CGTAAAACGTGTGAGCAAGTCGAAGAATGGGATCAACAATTGCCCGACCA
CCTATCTAAGGAGTGGAACCAACTTATCGACGAGCTTAAAGAAGCCGGTA
AAGTCATTATAGACCGGAACTATTGTGTTAACAACCCAGATGACCCGATC
GAGTCAACCCAGCTACATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013470XLOC_013470Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023987-exon-sc0000468-1491911889:65743..66365TCONS_00023987-exon-sc0000468-1491911889:65743..66365Clytia hemisphaericaexon
TCONS_00023987-exon-sc0000468-1510915933:65743..66365TCONS_00023987-exon-sc0000468-1510915933:65743..66365Clytia hemisphaericaexon
TCONS_00023987-exon-sc0000468-1575043694:65743..66365TCONS_00023987-exon-sc0000468-1575043694:65743..66365Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023987-proteinTCONS_00023987-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000468supercontigsc0000468:65743..66365 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156649	0.10132	0.87662	0.182346	1.89737	2.08598	0.470235	0	0.188671	0	0.925227	0.131123	0.24079	0	0.224518	0.538171	0.455239	0.383933	0	0	0.259715	0.0857903	0.689147	0.66981	0.568784	0.68475	0	0.160646	0.218525	0.357701
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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