TCONS_00024009 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024009
Unique NameTCONS_00024009
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024009 ID=TCONS_00024009|Name=TCONS_00024009|organism=Clytia hemisphaerica|type=transcript|length=3489bp
agaaaataaattcatagAAAAATCACCAAGAACGTCCAATTGATGTATCA
AAATTTACCATCACACATAAAATTTTATCACTGGTTTACAAGTTCGCATG
ATCtacattttttcttcaatttattTTGCCTGGGCCTAAGCTCACCGGAC
AAGTCTGTGATGAAAACTCACACCAACAAGCTTTTATATTAATTCGATCA
TCAAACGTGAACCACCAAGACGTCAAGATTCCACCTACCAATATTTTATC
CCACCACAGCGGCCATATGGCTGTATGTAAAGCTCATGGCCCACCATATA
ATACATCTGCAGCCTTGACACCTCAGTCAAACATCACAGATGATGATGGC
CCAAGTTACAAGAAATATCGCTCATGTACCTCAACCAAGGAACCTTCTAC
TCCAACTTCCAGAGAACTCAAGACTCTTGAAGCTGACAGGCCCATTGGTT
ATGGTGCATTTGGTGTTGTCTGggCTGTTACTGACCCACGAACTGGGAAA
AGGATTGCTTTGAAAAAGATGCCAAATGTATTTCAGAATATTGTCTCAAG
TAAAAGAGTTTATCGAGAACTAAGAATGTTATGCTTCTTTAAACATGAAA
ACgttATCCAAGCACTTGACATTTTACAGCCAGACCCTGTAGATCACATG
GATGAGCTATATGTTGTTACAGAACTCATGCAAAGTGACTTACACAAAAT
TATAGTGTCACCTCAACCCTTATCCTCTGATCATGTGAAAGTTTTCTTGT
ATCAAATCCTGAGAGGCTTGAAGTATCTACATTCTATTGGCATTCTTCAC
AGAGATATCAAGCCAGGAAATCTCCTTGTAAACAGCAattgtttattgaa
aatttgtgattttggtTTGGCACGAAGTGAAGAACCTGATAGAACGAAAG
AAATGACACAAGAGGTTGTAACTCAATATTATCGATCACCAGAACTGCTT
TCAGGGGCAACATATCATTCATATGGAGtTGACATGTGGAGTGTAGGTTG
CATATTTGCTGAACTACTGGGACGTAAAATTCTCTTTCAAGCTCAATCAC
CCATTCAACAGCTGAATCAAGTGATTAAACTACTTGGTACACCACATCCA
GAAGATATCAGAGAGTCTGGAGCAAGTGAAGGGGCATTTCAATATATTAT
GTCACAGCCCTACCAACCACCTGTCATGCACACACTACACAATCTATCAC
CAAGAGCTAACCACGAGGCAGTCCATTTACTATGCAGGATGCTTGTTTTC
AATCCATATAAGAGAATTTCGGTAACAGATGCATTAACACATCCGTATCT
TGACGAGGGCAGACTTCGTTATCATACCTGCATGTGCACTTGCTGTAAAA
CAACTCCCTCTGGTAGGGTGTATGTTGATGCACTGGAACCTGCAAATACT
CTACCTTATGACCTGAATTATGAAGAACATCTGTATACTGTACATCAAGT
AAAGGAAGCAGTTAgtaattttatatccaattGGCATCGGCAGAAAGGAG
TTGTACCATTGTGTTTAAATACAGCATCACCTGTTTATCATCAATTCCAG
TCgTCAACAGTTGCTCCACAACCAGAATTGACAGACTCTCCACATCCATG
GTGAAGTGGGCCTGAAATTCTTTCAATTTGGTGTAAATTCGAGAGAGGTG
TCTCTATCCTTAGCGGTGCTGCTCAGCTGAAAACCATTGGTTTGTTTGAG
CAGAAGGTTGCATGAAGCTGTACTTCATGAGCAATGGAAAGTTTTTTAAG
CATTCCTGATAAGAAATCCGTTTTTAAGGAATACCAGACTACATAGTCCA
AGAAAgtaatttattttcataaaaagataATGGTCATCTAATGATCAAAT
GAGAGAACCCCCCTCTCTCTAACCATCAATGCGTTGAACCCTCAAGCAGT
AAAAGAAGACTTGACTGGGCAGAGACCAATGATACTCAACTACAACAAGA
TGTAAATATAATAAACagaacaatattttttatgatcACCATCCCCTCTT
CTAAAAACATGAATTATAATGCAAGTTAGCATAACaatgctttctttttc
tgtACTATTTTTACCATAATGTCTCCCTCGTATATCAGAAAACGATCATG
TttagtttcatttttatcgtgTATTAAGAGATTTTTagccaaaaatattc
aaatttagaACAACCAGTTTTTTAATCGAGAATAACTCGGCATTGCTAGT
TGACTGACTGCAAAAACTTGGTTGTATTTAAAGACGAATATGCTTATATT
TAAAACATTCATTTCAAGAGGAAGaataaaagcatttttttaacaatttt
tttccttGCTTTGCAGCGGGAAAGTTTAATAAATTATAGTTGTAAAATAT
GAGAATTTACAGAAACTACTTTATTTTCATTAGTCAATgtaatttgtttt
ttataaatattataaatattatcataatttttttcctcCCTTTCTCAATA
AAATGGCTTTAATcctcctttttcaaatttttcagcctTGAGATCTTTTT
GGAGGTATTTTTCTTTGTCCTCTTTTTTGTATATACTTGAATGGGTATAG
ATGCTCTTTGTTTTCGTGTTGTggctttttctaattttcttaactctttt
tttcaaatctattttttcttttcaatttatataatttttttttttcattt
tttaatcaattaagaTGTCAGAATTTATCGTAAGGATTTTAGAGCAAAAA
CATTCCTTTAGGTCTACTTTTATACAATTCTTAACATTTAGTTGTATTTT
GTGTTTGTTATTTTAAATAAAGTagtcacttttttttatttttcgattat
TTCGACAAAATTTGTTATTTCTCACTTtaacgaaaattttaaaacaaaat
aagtTTTCTAAGTTCAAGGGTCCAAGTTCTCTATTCTTTGCCACAGAAAG
TCACGTGATCCACTATTAACCAATGGGATTCAATCATTTCGTGTGGCAAA
GAATCGAGAAAGGAATAGTCACCCTTAAACAAATTGTTGAAACAAATCAA
CGTCATTATTCATCAAAAGacgttactttttctaaatcaTATTCTGGATG
ACGTCACTAAGTATGCACCACacctttcatttttatttagttCTCGTGTT
GAATTAGCCACGAAATTAgcttcttattttttcaaatgactAATATTGCA
GGAGAACCTTACTAACTGTGTAAGCTGGTAGTGAAATTACTATTGTAAGC
AGTTAAATGtagaaaattagaatttttttatcccaTAATTATATCGAAAA
CTTGTCAAATTGTATTTTCTACAAACCAATAAGTACTAATTATTTGTCAT
TCGtcatgttttttttgttaattataTCTCTATAATTACGTTTACCATTT
TGTACAGATATTATTGTAAATTACCTTTTCCCCTATTTTTCACACGCCTC
AGTGTTGTGGATACGAAATATTGTTTTGTTAAAAACCAACTAAAATCTCG
TTGAAAAACGAGgagaataaaaaaagttttaaaaacaaa
Run BLAST on NCBI

transcript from alignment at sc0000470:29992..42042-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024009 ID=TCONS_00024009|Name=TCONS_00024009|organism=Clytia hemisphaerica|type=transcript|length=12051bp|location=Sequence derived from alignment at sc0000470:29992..42042- (Clytia hemisphaerica)
AGAAAATAAATTCATAGAAAAATCACCAAGAACGTCCAATTGATGTATCA
AAATTTACCATCACACATAAAATTTTATCACTGGTTTACAAGTTCGCATG
ATCTACATTTTTTCTTCAATTTATTTTGGTAAGTTTTCATAAACATAACC
TCTTGGATAGGACGACGGATTTTTTGAAAATTATCAAATGAAGAAAAAAT
TTTATATGACATGTTTTCAAATACTACAGAAGTTCGCTTGGTCAGCCTCA
CATACCCAAGATTTATATAATACTAACTAGGAGATTCCGTACAAGTGCAA
TATATTGAATTCACTGAAACTATACTCTAATATGTGACGGAGCCCGATGC
TTAACCCTTCCACTAAAATGGTTGTTTACTATTAATAATGACGTAATTTT
TAATACGGAGAAGCACCCAAATATGCCGGACATTCTTTTGCTACTAGATT
TATTACTTGAATCCAAAATAAGTCGCAAATATCCGGTCTTTTTTCGGGTG
GGGGGTTCTTTATAAAAGATTGTTTCATGAATATCATGAATTAAATCATA
TTCATGTTCAGGTCAAAAATACAAATTGATGAATTCCAATTGTATATAAT
TTTCCAGAAAAGTATTAAAAAGGTTTGGAATTAGAATATGTGCCTTGCTT
TCCCTGGTTCGTGACTTTGTCAGTTTTAGATTTCAGCATGACGTTACTAC
ATGCTAGAGAAGTCAATGTTACATTTATTTTCGAGGTTGATTTTAACTGT
TTGATTACGTGCTAAAACTGACTTTCTCTCCTCTTTGAGTTGATTAGACA
AAAAGAAATGTGACTTTTAGATGAAAAGAAGCTTATCTGTTTGGAAAGCC
CACTAAAACTTTGTCTGTCAATTTCAAATTTTATTGAAATGACCTTTTGT
ATTGACCTCTTCCGATTTCGGCAAATAAAGATACACACGTTCAGACGTCC
TGTTTCCTTTTTGATTTAATTGGATAGCTTTTTAAGTTTTTCTTAACTTG
TTGAGACGGTTTCCCCGTATATCAATGATGAGCGACTGGTTTAGAAGTAT
TGCCAGGAAGAGAATATTAGCAGGTTCACTTTCTGTCATCTTATTGGGCT
CTATATTACACCCCCTTCTCACAGGCCCACTGGCACCCCTTCCCACTGAA
AAGAATGACCAAAATATCGTCCCCAGTGGAAAATTTTCCTCCAATTTTTG
TCCTTACTGAAAATAATCAATTAAACCAATCTCGATGCAAAAGATGATGC
TATTTTTCCTATCCCCACTGAACTTTCTGACTTAAAAACAAAAGAATCGA
AATCTCCAGCCATAAAAAATATGGGAATATCAATCCCCATCGAGTTTCAG
TTCGTTATTTTCATCCCCACTGGTTGACAAAATCCTACTGGGTCTGTGAA
AAGGGGTGTTATATCATACACTAAAGTGATTGCGACATATCTGTGTCGTG
TCTTCACATTTCTTTCGCAAAATTTGTAGAAAGAAGCTCGGTCACTCAGA
ACTAATTCAAAAGACATGGGAAATAAATTTGCTTAGAAATACTGATATTG
ATAATTATTTTTCTATCTGGAAGTTCCTGTCTAAAAGTAAACAATTTAAT
TTTCGATATACTGTATTTACTTTCAGTTGCTTTGCTTCCTTTCCTGCATT
CTTTATAGACTTTATATAAGTGATAAAAATCAAATCGTGAGTTTCTATTT
CCCACATACTGAAGCAATAAGATGTGTAAGCGGAAGCGAAAAATCGAGGT
AGAAAAATGATTTCCTTTTTCAAATAAATTGATTTTTAAGACAAATGATG
ACGAAAATTATTTTGTCATAATTATAACACTGTGAGATTACCGGAAGTAA
AATGCAAATATTTTTTTCTCTATCAGTTATAATTTTTTCTTTAGAAATTG
TTTATCAATCATTAACATTAATTACTTAATACTTAATGAATTAAAAGGAA
AAAATATAATATTAATTATGTAAATAAAAAATAATAGAAAAACAAAGAAT
AATAGAATATAATAAAAAATAACAATTAAGGAGAGTAATTAATGTAAATA
AAAATGACAAATCTTGAATCATTTGGTTTGGTCAAACCTATCTTTTATTG
TGACTGAACAAGGCGATTCAAGGTGTATTAGCAAGGAAATTATATTATAT
CTTCGGTATTAGTGGCAGGGATCAGCTCAAAGAAAAATTATGAGAATGGT
AGGTATATATATCATANTTATTTTTTTTTCTTTAGAAATTGTTTATCAAT
CATTAACATTAATTACTTAATACTTAATGAATTAAAAGGAAAAAATATAA
TATTAATTATGTAAATAAAAAATAATAGAAAAACAAAGAATAATAGAATA
TGATAAAAAATAACAATTAAGGAGAGTAATTAATGTAAATAAAAATGACA
AATCTTGAATCATTTGGTTTGGTCAAACCTATCTTTTATTGTGACTGAAC
AAGGCGATTCAAGGTGTATTAGCAAGGAAATTATATTATATCTTCGGTAT
TAGTGACAGGGATCATCTCAAAGAAAAATTATGAGAATGGTAGGTATATA
TATCATATATTGAAAATAAACTTTGATTAACTAAAACTTAATTTTACGAT
AGCTGTACCACACACATGATCCAGAGGAATGTAAAGAGATGGAAAAACAG
CTTTTCAGATTACTCAAAGTTCAACGATCACTTCTATTGTAAAAACGTTG
ATTAGGTCATTAAGTGAAAGTCCAGAAAAGACGGCTCGCCATACAAATCG
GACGGTTTCTACATGATTTGACGATGAAAATGAAAATTTGTTTTTCCTTT
TTTGCCGATTACTAGTTCAATTTTTAAGAATAAGGAGCAATATTTTTACC
AATGTACAGCAAAAGAAATTCTTAACGCAATGATATTAAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATGTTTTGCAT
ACATTCCAACTAAATCCAACCACGGCATTTTCGTTCCTGTATTTTTGCAT
ACAATTCAATATGGCGGACGCAAAGGCGAAAAGGTCTATTGGTTCTTGTA
AAACTATCAGAAGTCGAGTAAAATCAAGATGAAGTTATAATTTTTCTCGA
GCTCTAGCTTTCCATATTATGGTGCGGCCATGACGCGGTTATATCAGTAG
AATCGCTAGGAAATTCTGAGCAAGAAGATATAGGTACCTTTTCGTATAGC
AGAGGTGTAACCAAAATAGCCCTAAAAGTTTGCGCATAATCAGGCTTGAA
ACAAAAGAATTTTGTCACAGCACGCTAATTATGCAGATTTTTTATAGCGG
CAACAAAAGAAACCTATTTACTCGACATAAACTCCCTTAAGGGCAAGAGA
CCTGGTATATGACGAGCCGTTTGTCCATTGTTTTCAAGAAGCTGTTTTTC
CATCTCTATACATTCCTCTGCATGATCTAAGTTAGAGATCTCTGGTTTTA
AGAGCTAAAGCGTGGGTGGCCGTCGGCGGCCGTTGATACGCATTCAAATC
AGATAAGACACTGGTGTACCACGGAGGCATGCGTTTACATTTTTGCGCCG
TGAAGTTTGACGGAGACGGCATGCAAAATCACGCCTCTTCTTTAGTGACA
TAGTACATGATGTATTTTTAACAATTTTCTGACACTCTTACACAAAATTG
AGCTCAAAATAAAAACTTGCACAAAAAGGTTATCTGTTTCAATATTTCAA
GACACTAACACAAAAAAATGGAGTCCTTCTATAGGATAGGCTTAATGGTG
TCATTAGTTTTGACGTCATAACTCGCATAACATGACCAAGAGTGACGTTG
TTTATGAATAGATTTTGTATAAGGGAAAAGTACTTTGTGTCATATCTTTT
TTAAATGATGATAAACTATTTTTTCAAGAGTAGTTAGAGAGGGAAAGAGG
ACATATGTGTGTGTGTGTGTATTTGATAGAAGGACTAGCAGTTTATGATT
CATATAGTTTCTATTTGACAAGAGAAAAATCAAAGGAGAGGAGAGAAAAA
ATGAGAAAAGATCTCTTAGAAAATTAAACATTTATCGAATCAATTTGAAT
GGACGCTTTTTTCGTATCGTTCTCCCTTTGATTTTGTCGGATTTTTCTAC
TAAAATCTGGTAAGTAGTTTCACCAAGTTGAGAACGCATCACAAAGCGAA
ACCGTAATTTTGATTTGTTTACATGGTGCTGTAATTTACAGACCGGAATT
GAAACTTTAAATTTTCACTTCGTGCCGAGTCTTTTTTTTTCCCACGAAAG
ACAAAAATTCAAGAAGTCTGGGGTTGAAGTTGGCCAAAAATTCGATTTAC
GCATGCGTTGACTCCATCCTTTCAGAAACTTTTTTTATGATCATTCGTGT
AGAAATATTATATGTATTGTCTTCTTGCTTGAAGAAGCCGGTAGCTTCGA
GTAGTGTCAAGTAGCAAGCAACAAAAAAGGCTACTCGACGATGCAACTAC
CAACAAAATAAATTATTTTATTGTGTCTTTTTTTTCTTTTATGGTACTTG
GCTTCTTTTAGCCTGGGCCTAAGCTCACCGGACAAGTCTGTGATGAAAAC
TCACACCAACAAGCTTTTATATTAATTCGATCATCAAACGTGAACCACCA
AGACGTCAAGATTCCACCTACCAATATTTTATCCCACCACAGCGGCCATA
TGGCTGTATGTAAAGCTCATGGCCCACCATATAATACATCTGCAGCCTTG
ACACCTCAGTCAAACATCACAGATGATGATGGCCCAAGTTACAAGAAATA
TCGCTCATGTACCTCAACCAAGGAACCTTCTACTCCAACTTCCAGAGAAC
TCAAGACTCTTGAAGCTGACAGGCCCATTGGTTATGGTGCATTTGGTGTT
GTCTGGTAAGTGAATTGCTATATGCTGTCTAACTTTGTCATTGAAAGATT
TTATTTATACAATGTATGGCTGCTTATTTAAAATATATTTTTTCTTCCCC
ACCAATCAAATAACTTCAAACTGGGTTATTCAAAAAACAGGGCTGTAAAA
CAGCTATGGATGTCGGTCATGAGGAAAGAACCTCATAGAAAAGTTTCTTC
GATCAATTACTTTGTATGGTTGAAACAGCCCATTCTACATGAGTTGAAAA
AGTAGTTTTTCAAGACCTTTCCTATTGTTCAAGTTCACTCAGGCCTGTAA
ACTTCAAATTCAAAATTTCCAAGGCGAGAGAAGAAAATGTATGTATTTCC
AAGGCAATTGAATTAAAAAACGCGAAAAAGAGTGGAATTTCCGATGCATT
TTGCAAAAGTACATGAATTTTTATTGGAATTTCTGACCACCACTGGAAAA
AAAAAAATATTTCTGAGGCTAGAAAAAATTAAAAAATGTAGTCCGATGGG
GGGTAACAAAAATTTTCTGGAATGGCCCACTTTAAGACGAGGCCAATTTG
ATATGTTGTTTTACGGGCCAAGCTACCCAAAAAAGAGCCAAAAAAGATGG
AAGGTCGGTCAGCAAAAAAATAAAAATAAAAGTAGAATTTTACCTATGAA
ATTTAAAACTACTGCATCTTGACAAAAAAGGGAAATAGAAAATTAAAAGG
CACAAAAAGGTCAAATTCATGGCTAAAATGAAAAATTTAACATAAAATAC
TTACTAAATTGTTACCTGTGTTACTTANTATTTCTGAGGCTAGAAAAAAT
TAAAAAATGCACGTCGTCCGACAGGGGGTAACAAAAATTTTCTGGAATGG
CCCACTTTAGATACAAGACGAGGCCAATTTGATATGCTGTTTTACAGGCC
AAGCTACCCAAAAAAGAGGGAAGGTCGGTCAGCAAAAAAATAAATATAAA
AAGAAAAAGAAATATAAAACTACTGCATCTTGAAAGGGGAAAAGAAAAGG
GAAATAGAAAATTAAAGAAAATTAAAAGGCGCAAAAAGGTCAAATTCATG
GCTAAAATGAAAAATTGAACATAAAATACTTACTAACTTGTTACCTGTGT
TACTTATTCTCAAAACTGGTATTACTGACTGGTCAGAGACGATGAATTGG
GAGAAATCCTTCCAGTGTAGTAGTTGGTGGATTCCAACACACTAGCAATG
TGGAGATGGATTTCTCCCAATTCATCGTCTCTGACCAGTCAGTAGATAAG
AATTCACTTCCAGCTCTACCAAGTGGCAATTGAGTCATCGGGTTCCACAT
GGACCCCAGGCCATTTTTCATGCCCTTTTAGCGTCCGGTCATCGGACGCT
GCCCCTCCTAAAATCTCTAAAATTTTGGTAAAAACAGTCTTTTTAGCAGA
AAAACACAAGAAAAAGTGCCCTTTTTGGCCACCAACGGACGCTGCCCTGC
CTTTCTAAAATATGACCTGGACCCGTAGCTCAATGGTAGAGCAAATTCCC
GCGAATGGCATGGTTGTGAGTTAGAGTCTTGCCGGATCTGTTGGTTTTCC
AACGGTTCTGGTGGCTGGTCAGAAAACAATATGAGAGCGACTGTATTCAC
CTCACTGTAATACATAAGGGCAATATTCATGATTAATAACTCTCATTATA
ATTTTTCATTTTTGTTATTTTAGGGCTGTTACTGACCCACGAACTGGGAA
AAGGATTGCTTTGAAAAAGATGCCAAATGTATTTCAGAATATTGTCTCAA
GTAAAAGAGTTTATCGAGAACTAAGAATGTTATGCTTCTTTAAACATGAA
AACGTAAGTTGTTGAAAATTTGTCCATCCTTTTTTGCAATTAGGAGAAGC
ATTGATTTTTCAAATATTTTAATAATTGAAAAACTTTATTTTGACTTAAA
ACAAGTTGTTTATCTTTTTATCTATATTTCAGTACAAAAAGATCCTAGGA
CCCATGTAAGAAATGAAATTGAACCCTCTCATGATTTTTCTTTTTTCAGG
TTATCCAAGCACTTGACATTTTACAGCCAGACCCTGTAGATCACATGGAT
GAGCTGTATCTTTTTCAAATTTTTCACCTATAATTGTAAAAAGAAGAGAG
AAAAAATCTTTTCCTCTTTCAATAATACTACCCACAGCTTGGGTGTGCTT
TTTATCACAGGGTATTATGGTAATGTTAAAGGGCAAACACTTTCCCTCCT
ATAAAGGTTATGTGTGTGCTTATTGTTTTGAAAGCCACTGTCACAAACTG
TGCATATCAGGCCCTATTATTGTTGAGATTAAACTGTAATTGAACATTGT
CCACCCGGTTTCTGTCAATAATTACACATGAGGTGAAATGACAGTAATCA
ATCAAGTGGTCTTCAAATAATAGTTAACATTGTTAACTTCTTTCTCTTAA
CACCTGGGCTAGCTAATTAGAAAAAGTCATTAAAAGTTTTAATTATCATG
AATGATAGTTGGAATTGAATGGCATCTTTTCGAATGTTATGATTTTTTCA
TGAAAGTGTTTTTCCTTAACTCAGACTTTTTATGCAGATATGTTGTTACA
GAACTCATGCAAAGTGACTTACACAAAATTATAGTGTCACCTCAACCCTT
ATCCTCTGATCATGTGAAAGTTTTCTTGTATCAAATCCTGAGAGGTATTT
CATTATATACATTTTATCTTTAGAATTGACATTTATTATTAAAACATTTT
CTTTCAATGAAGCATGATTTGATTTTGAATGAAAGCCACATGGGTTTTCA
CAATATACAACTGTTTTCTATACATAAATATTACCTGTTTTTTATCTTTT
TCTTTTGTTTATTGTTCACATTTCACAAGATGCATTCCTTGCATTTCCCT
TATTAACTTATGGATTAAACTTATTTTTTAGGCTTGAAGTATCTACATTC
TATTGGCATTCTTCACAGAGATATCAAGCCAGGAAATCTCCTTGTAAACA
GCAATTGTTTATTGAAAATTTGTGATTTTGGTTTGGCACGAAGTGAAGAA
CCTGATAGAACGAAAGAAATGACACAAGAGGTACACATGCAATTTGATAT
TATTTAGATGAAATTTGAGTTGACATCGATACAACACATTGATGTTTCAC
ATAATTTTGACTACTATATTAATTTTGACAACCTTTTTTATTCTTTAAAA
TTAGAATTCACGTAAAAATATTAGAATGCTGCAAGTCACTTAAAAAGATT
TATTTTAGTAAATTTCTTTCTTGTATTGTAGGTTGTAACTCAATATTATC
GATCACCAGAACTGCTTTCAGGGGCAACATATCATTCATATGGAGGTTTG
TTCAATCCCTTGATCTTATCTTTTGTTGTTCTGCTTTGACACCACTCCTC
TGTTGGATTTGTTGTTTAGTGTTAATTTTGATTTGAGAAATTAGTACAAA
TTCCTTTGTCTCAGGCATATCAGGGACTGCTTTTCCTCTTTTCGAGCAAT
TCTTTTACAACACTGAACTTTTACTTTATTAAAGTCTTTTTCACATGTAC
ATAAATCTTACTTTAGACCTTACGGAAAATTGTTCTTAAGGTTGTCTTTT
GGGAATTTCCCCGCCCTTACGTACAGTTTTTCTGAGGGTCTTAAGTGACT
TTTCAAAGCAAACTAACCAAACTCTACTTAAGGCCTTAAAACACTACATA
AGCTTAGGGAAATCCCCCGCTCTCTAAGGTCTTAAGTAAAGTTTTACGTG
CATGTGAAAAAAGCTTAACAGACATGATTTTCATCTCCATGTTTTCTTTT
TGTTTCAGTTGACATGTGGAGTGTAGGTTGCATATTTGCTGAACTACTGG
GACGTAAAATTCTCTTTCAAGCTCAATCACCCATTCAACAGGTAATAAGC
TTCACCAAATTTTCTCATATTATTTACTGTTTCAATTTGTTGAGCCAATT
TTGGTATGTTAAGCTACGAATACATATACAGTTCACTCACTTGATTTTTA
CGGGGCAAAGAATTTTTTTTCAAATTAGAGAAAAATTCTAATTATGGAGA
GCAGTTTTTTTCCAGCTGAAGAGACCAGTGTCTCTGTTCGAACTACAGAA
AGATTGAAATAAAAGAGGTTTTAATTAGATTGACTGTATTTTGAAATTCT
ATTGTATTTAACTCTTTATTCAACTTTTTACTTTTGAATTTCAGCTGAAT
CAAGTGATTAAACTACTTGGTACACCACATCCAGAAGATATCAGAGAGTC
TGGAGCAAGTGAAGGGGCATTTCAATATATTATGTCACAGCCCTACCAAC
CACCTGTCATGCACACACTACACAATCTATCACCAAGAGCTAACCACGAG
GCAGTCCATTTACTATGCAGGATGCTTGTTTTCAATCCATATAAGAGAAT
TTCGGTAACAGATGCATTAACACATCCGTATCTTGACGAGGGCAGACTTC
GTTATCATACCTGCATGTGCACTTGCTGTAAAACAACTCCCTCTGGTAGG
GTGTATGTTGATGGTATGTTGCTTGATTTTGTTTGTTACTAATGTTCCCT
TACTAGTCTAAGACTATTCCAGTCTTTTGCATATCCTCACTGCTCATTTT
AATGACAATGCACAATGCAACAGGTACGACCAGGTACGACAGGTACAATG
GCTGCTATACCAGATTTTCACAAAAAAAAACCCGAAATTTTCCTTTTCGT
CAGTAAGGACATTATGTTGTATGTTCTCAAGAGATAACTTTTTAATTGTT
TCTTTTTTAGCACTGGAACCTGCAAATACTCTACCTTATGACCTGAATTA
TGAAGAACATCTGTATACTGTACATCAAGTAAAGGAAGCAGTTAGTAATT
TTATATCCAATTGGCATCGGCAGAAAGGAGTTGTACCATTGTGTTTAAAT
ACAGCATCACCTGTTTATCATCAATTCCAGTCGTAAGTATAAACTTTCAA
GCTTGAGGGAACTTAACCAAATTTTGGGTATGGTAATTGCTTCTTTTACA
TCTTTTATCACATTAGTTTTTATTATTGATTCATTATTGATACTTGGTCA
ACAGTGTGTGGACAACTTATTGTCTTTATCAAGATTCCTAAACCCTACAT
TTTAACTCGAATAGNGGACAACTTATTGTTTTTACAGGTTTTTATCAAGA
TTCCTAAACCCTACATTTTAACTCAATAAAAAATGGATTTAATGTGTTGA
AAATTTTTTTACAGGTCAACAGTTGCTCCACAACCAGAATTGACAGACTC
TCCACATCCATGGTGAAGTGGGCCTGAAATTCTTTCAATTTGGTGTAAAT
TCGAGAGAGGTGTCTCTATCCTTAGCGGTGCTGCTCAGCTGAAAACCATT
GGTTTGTTTGAGCAGAAGGTTGCATGAAGCTGTACTTCATGAGCAATGGA
AAGTTTTTTAAGCATTCCTGATAAGAAATCCGTTTTTAAGGAATACCAGA
CTACATAGTCCAAGAAAGTAATTTATTTTCATAAAAAGATAATGGTCATC
TAATGATCAAATGAGAGAACCCCCCTCTCTCTAACCATCAATGCGTTGAA
CCCTCAAGCAGTAAAAGAAGACTTGACTGGGCAGAGACCAATGATACTCA
ACTACAACAAGATGTAAATATAATAAACAGAACAATATTTTTTATGATCA
CCATCCCCTCTTCTAAAAACATGAATTATAATGCAAGTTAGCATAACAAT
GCTTTCTTTTTCTGTACTATTTTTACCATAATGTCTCCCTCGTATATCAG
AAAACGATCATGTTTAGTTTCATTTTTATCGTGTATTAAGAGATTTTTAG
CCAAAAATATTCAAATTTAGAACAACCAGTTTTTTAATCGAGAATAACTC
GGCATTGCTAGTTGACTGACTGCAAAAACTTGGTTGTATTTAAAGACGAA
TATGCTTATATTTAAAACATTCATTTCAAGAGGAAGAATAAAAGCATTTT
TTTAACAATTTTTTTCCTTGCTTTGCAGCGGGAAAGTTTAATAAATTATA
GTTGTAAAATATGAGAATTTACAGAAACTACTTTATTTTCATTAGTCAAT
GTAATTTGTTTTTTATAAATATTATAAATATTATCATAATTTTTTTCCTC
CCTTTCTCAATAAAATGGCTTTAATCCTCCTTTTTCAAATTTTTCAGCCT
TGAGATCTTTTTGGAGGTATTTTTCTTTGTCCTCTTTTTTGTATATACTT
GAATGGGTATAGATGCTCTTTGTTTTCGTGTTGTGGCTTTTTCTAATTTT
CTTAACTCTTTTTTTCAAATCTATTTTTTCTTTTCAATTTATATAATTTT
TTTTTTTCATTTTTTAATCAATTAAGATGTCAGAATTTATCGTAAGGATT
TTAGAGCAAAAACATTCCTTTAGGTCTACTTTTATACAATTCTTAACATT
TAGTTGTATTTTGTGTTTGTTATTTTAAATAAAGTAGTCACTTTTTTTTA
TTTTTCGATTATTTCGACAAAATTTGTTATTTCTCACTTTAACGAAAATT
TTAAAACAAAATAAGTTTTCTAAGTTCAAGGGTCCAAGTTCTCTATTCTT
TGCCACAGAAAGTCACGTGATCCACTATTAACCAATGGGATTCAATCATT
TCGTGTGGCAAAGAATCGAGAAAGGAATAGTCACCCTTAAACAAATTGTT
GAAACAAATCAACGTCATTATTCATCAAAAGACGTTACTTTTTCTAAATC
ATATTCTGGATGACGTCACTAAGTATGCACCACACCTTTCATTTTTATTT
AGTTCTCGTGTTGAATTAGCCACGAAATTAGCTTCTTATTTTTTCAAATG
ACTAATATTGCAGGAGAACCTTACTAACTGTGTAAGCTGGTAGTGAAATT
ACTATTGTAAGCAGTTAAATGTAGAAAATTAGAATTTTTTTATCCCATAA
TTATATCGAAAACTTGTCAAATTGTATTTTCTACAAACCAATAAGTACTA
ATTATTTGTCATTCGTCATGTTTTTTTTGTTAATTATATCTCTATAATTA
CGTTTACCATTTTGTACAGATATTATTGTAAATTACCTTTTCCCCTATTT
TTCACACGCCTCAGTGTTGTGGATACGAAATATTGTTTTGTTAAAAACCA
ACTAAAATCTCGTTGAAAAACGAGGAGAATAAAAAAAGTTTTAAAAACAA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013488XLOC_013488Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024009-exon-sc0000470-1575043694:41915..42042TCONS_00024009-exon-sc0000470-1575043694:41915..42042Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:37088..37431TCONS_00024009-exon-sc0000470-1575043694:37088..37431Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:35290..35419TCONS_00024009-exon-sc0000470-1575043694:35290..35419Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:35038..35093TCONS_00024009-exon-sc0000470-1575043694:35038..35093Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:34449..34555TCONS_00024009-exon-sc0000470-1575043694:34449..34555Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:34063..34211TCONS_00024009-exon-sc0000470-1575043694:34063..34211Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:33798..33861TCONS_00024009-exon-sc0000470-1575043694:33798..33861Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:33252..33334TCONS_00024009-exon-sc0000470-1575043694:33252..33334Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:32630..32948TCONS_00024009-exon-sc0000470-1575043694:32630..32948Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:32211..32382TCONS_00024009-exon-sc0000470-1575043694:32211..32382Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1575043694:29992..31928TCONS_00024009-exon-sc0000470-1575043694:29992..31928Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:41915..42042TCONS_00024009-exon-sc0000470-1510915933:41915..42042Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:37088..37431TCONS_00024009-exon-sc0000470-1510915933:37088..37431Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:35290..35419TCONS_00024009-exon-sc0000470-1510915933:35290..35419Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:35038..35093TCONS_00024009-exon-sc0000470-1510915933:35038..35093Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:34449..34555TCONS_00024009-exon-sc0000470-1510915933:34449..34555Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:34063..34211TCONS_00024009-exon-sc0000470-1510915933:34063..34211Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:33798..33861TCONS_00024009-exon-sc0000470-1510915933:33798..33861Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:33252..33334TCONS_00024009-exon-sc0000470-1510915933:33252..33334Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:32630..32948TCONS_00024009-exon-sc0000470-1510915933:32630..32948Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:32211..32382TCONS_00024009-exon-sc0000470-1510915933:32211..32382Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1510915933:29992..31928TCONS_00024009-exon-sc0000470-1510915933:29992..31928Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:41915..42042TCONS_00024009-exon-sc0000470-1491911889:41915..42042Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:37088..37431TCONS_00024009-exon-sc0000470-1491911889:37088..37431Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:35290..35419TCONS_00024009-exon-sc0000470-1491911889:35290..35419Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:35038..35093TCONS_00024009-exon-sc0000470-1491911889:35038..35093Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:34449..34555TCONS_00024009-exon-sc0000470-1491911889:34449..34555Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:34063..34211TCONS_00024009-exon-sc0000470-1491911889:34063..34211Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:33798..33861TCONS_00024009-exon-sc0000470-1491911889:33798..33861Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:33252..33334TCONS_00024009-exon-sc0000470-1491911889:33252..33334Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:32630..32948TCONS_00024009-exon-sc0000470-1491911889:32630..32948Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:32211..32382TCONS_00024009-exon-sc0000470-1491911889:32211..32382Clytia hemisphaericaexon
TCONS_00024009-exon-sc0000470-1491911889:29992..31928TCONS_00024009-exon-sc0000470-1491911889:29992..31928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000470supercontigsc0000470:29992..42042 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107686	0.073954	0	1.94043e-08	22.1036	4.0884	10.5946	1.24393	0.0105981	2.02244	0.00174363	0.0338782	1.1591	0.000151311	0.00104327	0.363015	18.1722	1.98562	3.19451	0.00159896	0.000112006	0.0372266	1.55744	6.02698e-06	9.06102e-06	0.113228	0	2.86771e-06	1.8478	1.94275
Blast
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BLAST of TCONS_00024009 vs. Swiss-Prot (Human)
Match: NLK (Serine/threonine-protein kinase NLK OS=Homo sapiens GN=NLK PE=1 SV=2)

HSP 1 Score: 551.977 bits (1421), Expect = 0.000e+0
Identity = 267/393 (67.94%), Postives = 313/393 (79.64%), Query Frame = 3 
Query:  426 LEADRPIGYGAFGVVWAVTDPRTGKRIALKKMPNVFQNIVSSKRVYRELRMLCFFKHENVIQALDILQPDPVDHMDELYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSIGILHRDIKPGNLLVNSNCLLKICDFGLARSEEPDRTKEMTQEVVTQYYRSPELLSGATYHSYGVDMWSVGCIFAELLGRKILFQAQSPIQQLNQVIKLLGTPHPEDIRESGASEGAFQYIMSQPYQPPVMHTLHNLSPRANHEAVHLLCRMLVFNPYKRISVTDALTHPYLDEGRLRYHTCMCTCCKTTPSGRVYVDALEPANTLPYDLNYEEHLYTVHQVKEAVSNFISNWHRQKG-VVPLCLNTASPVYHQFQSSTVAPQPELTDSPHPW 1601
            +E DRPIGYGAFGVVW+VTDPR GKR+ALKKMPNVFQN+VS KRV+REL+MLCFFKH+NV+ ALDILQP  +D+ +E+YVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHS GILHRDIKPGNLLVNSNC+LKICDFGLAR EE D ++ MTQEVVTQYYR+PE+L G+ ++S  +D+WSVGCIFAELLGR+ILFQAQSPIQQL+ +  LLGTP  E +R   A EGA  +I+  P++ P +  L+ LS +A HEAVHLLCRMLVF+P KRIS  DAL HPYLDEGRLRYHTCMC CC +T +GRVY    EP     +D  +E++L +V QVKE +  FI    +QKG  VPLC+N  S  +  F SSTVA   E+  SP  W
Sbjct:  138 IEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDYFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEELDESRHMTQEVVTQYYRAPEILMGSRHYSNAIDIWSVGCIFAELLGRRILFQAQSPIQQLDLITDLLGTPSLEAMRT--ACEGAKAHILRGPHKQPSLPVLYTLSSQATHEAVHLLCRMLVFDPSKRISAKDALAHPYLDEGRLRYHTCMCKCCFSTSTGRVYTSDFEPVTNPKFDDTFEKNLSSVRQVKEIIHQFI--LEQQKGNRVPLCINPQSAAFKSFISSTVAQPSEMPPSPLVW 526
The following BLAST results are available for this feature:
BLAST of TCONS_00024009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NLK0.000e+067.94Serine/threonine-protein kinase NLK OS=Homo sapien... [more]
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