TCONS_00024050 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024050
Unique NameTCONS_00024050
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024050 ID=TCONS_00024050|Name=TCONS_00024050|organism=Clytia hemisphaerica|type=transcript|length=3456bp
tttagaaaattaacttaaaattaaaatagCACAAACAACCAAAACACAGC
ACTACATAAAAATAACGCATAATGACTCTTGGACGGACTGTTAAAGATGA
ACTCGCAGACATCATGAGTTCTATCAACGATCACGTCGAGTTAGCAGACT
ATATCATCAAATCACCGCCCAAAGAGAAACAACACAACGCCCTGGTGAGG
TGGTGCATGAGATGGTTTGTCTTGTATTACAACAGGGCGCAAAATAAATG
TTGGTTACTGTACTTCCAAAACGAAGAAGCGTTTCTAAGTGGAAAACTAC
CAAAAGGTAAAATCGATTTAAAGTTATCGAAGATCAAGGAACACAAAACA
CCTATGAACAAATATGAATACGTGATCGATGTCATAGCTATCAAACGTAC
CTTTCACCTCTGTTTTTTGAATcggaaaatttatcaaaaatggcTGACCG
CGTTGAAAGAATGTCATTCGGAAGTatggTCATCACAAGTTCAACAAAAA
Gttacaaacaacaacaacaacaacaacaacaacaacaacaacaacaacac
atACAATCAGCAGCAACAAAAACAACTTCCGATCGTTAACGACAACGACA
TAGAAGAAGATAACAATCTCGACAACGCCAATCCCGATCCCGATAACGAT
AACGACGACCATTATCTACACAGGCTGGACTATGAAGAGGATCTATCATC
ATCCATCACTAACTCACTTGGAAATCATAATGAAGACCTAGAAGAAGAGG
ATGAGGAAGATCAAAGATACCTTGACAATGGCGAAGTTGATTTAATGGAA
TCGTTAAGAATAAATGACAATGGTGACAGTCTTGGAAATATAAGAGAAGA
AAATGATGATGTCTTTGATGaaACTGCTAGTATCTCATCCAATCGATCGT
CTATTTCATACCAGAGCTACACTCCACCTCCATCACGGTATCGAAACTCC
ATCGATGTCGGTGCCATGCGTAGCCAACACCAACATTCACCATTCCTCTT
AAACAATCGAAAAATGCCTTCAAGATCAACTACAATACCAAAAGATATAA
ATGAACTTTTACTTGAAGCCGATACCAAGCATGAGAAAAGATATGCAAGT
TTACAAGAAGTTTCCACCACAAAACGAACATCTATATCACCATTGAATAT
CCACCTGGAAATGCTTGAACGTCTGGAGAAAGCAGCTGCTAAAAGACCAC
TATCTGATGGTTCTGATTATGACATGGGAGGTTTTACAGGACCAAGGTTC
AATTACTCGCATCAgtgattgaaaattaaaaacagtaGTTGTTGATTGAA
AGTCACTCATATTGAGTGAAAGAAAATTGACCATGAAAAGCGGATTATTT
TTCTAGGAAATACGTGGTAGTTTAAGGTTTCTGTTATGTTCAGTTCATTG
TAGAATATCGTGACATTCAAACTTTATTTCTATATTTGAGTTTTTTCATA
CTATTTTATCTTTTTGACAAATTATATAGATTTTACGGGACAATATTATC
TTTCTTGGTTGATGTAAATATTATTAATGTACATGtttttagaaataaaa
cttaaaattcattctTAAAAAGCCTTTACATTCGCTGGAGTTGGTGATAT
GGAAATTAGCTTCCCACATCCATTGGCACCTCCATCTtagcacccctgtc
tcaaagccccggtgaaacttttttcctcagtggggataaaacttcctatt
gaaatccaaaTGGGGTTAGAAAGTTCATTGGGgatgggtttggagtgcaa
ctcttaaacattgaatttcaaatggggatgaaatcaaagtcaatttccca
gtggggctgacatttcagggtattttcccactggggaccaaattttccag
tggggctgggctcccagcgggtctgtaacACAGACATGAAACTCTACCAA
AAGAGTTCTCCCGGTGAAACAATACTCAGAATATATCATTTTaatatcat
tctatcatttccACCTGGGAACGATCCCAAAGCCAGGATAATTCTCGGTG
AATTTTTTAGCTATACAAAGAAAATTCGATATTTTGATTCTTCCCAAATG
GGATGAGctagagtttttacaagatacttcactaattggtcatttgaagt
gatagcgatgacgcgttctttagaacaagtaacaaaattgttttattact
ggttaacgaccaaccaaatcaaataagagcttgtaaaaactccagcttgt
ccctccCAAATAGGtacaaaacattaaatttcacgaaaagaaaattaaaa
cgcGGTCATTATCCTTATCAGCTACCAACAATAATCCGTTAAAAACACAA
ACATCATTTGGACATTTAAACGACCTCAGAGATGTTCCATGGCGTCCAAA
CGAAGTTCGAAAATCACCATTTTCTTTCAATACACATATTCGGTGATTAC
CAGTGTCACAGACAATAATATGCCGAGAAACTTGGTCAGTTACGCCATCA
GGTTCATCAGAAGAATCATCGCAGCTGTTTTCACCAGCATCAATGGCCGT
GCATTTATTATGAGGCTCGATTCCAGCTCCAGCATCAACGGTTGTTGAAT
CATCTTTGACCACAGAATCAAAATTAGCTTGtgcttttttcaattcttca
acaagATCTAAATCATGGATATCAAGTGATTCCAAAGAAAAGTCTGATAC
ATCGAATCCATTTAAGCTCATATCTGAAGCATTTCTTCTGAGACGGGTTG
CATCCATTGATACGAATTGACAAGATTTGGATTTCTCAGTTTCCAGTTCT
GCAACTACAGACTTTTCATTTTGATCAAGGCTAGTGAATGAACCATCGTC
AAAAAAAATAGCAGTGGGCTGAACAAATTCACCATCGCCAATCCCCAACG
ATCCAACAGTTTGACATTCTAAAACATTGCAAGCGGATATTCTATACATA
TGAACACTGTGTTCACCACAATCAGTCACTAAGATGTTTGATTCATCTTG
GATGGTGAATTTGGATGGAGTGACGACATACTCTGATAAATCAACCATGT
TTTTGTAATGTCCCTCCAAATCATAGACGTGTATTCCCTTATTGACCTTA
TCCAAAAGATATAATTCTGATGTGTGAACATTGAACTTGATGCACGATAT
CTCTGGTAAATCCATCGTCCTGCCAAGATAATGTGGTACAAACTGTAAGA
CCAGTTCCGTTTGTTGATATTTCCGTATAATCCGACGCCCGGTGACATAG
TAACAATTTTCGAGATCTATTGCCAAGTCAACAGGCTCTAAAGTATCTAA
CcctatttcaaaatttgtttccCCGTTAAATCCGATATTAACAATCCGAT
ATCCTGTTTTATTACATCCATCCATCACAACGAGATTTCCATTTTGGTCG
ACCGCAATGAAGAAAGGTTGATTCAGTTTTGTTTTGGCGCTTTCTTGGAG
ATCATTTTTGACTTCATTTccaattgaatatatttttgaacCAAGCATGT
CGTAAT
Run BLAST on NCBI

transcript from alignment at sc0000471:62569..68600-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024050 ID=TCONS_00024050|Name=TCONS_00024050|organism=Clytia hemisphaerica|type=transcript|length=6032bp|location=Sequence derived from alignment at sc0000471:62569..68600- (Clytia hemisphaerica)
TTTAGAAAATTAACTTAAAATTAAAATAGCACAAACAACCAAAACACAGC
ACTACATAAAAATAACGCATAATGACTCTTGGACGGACTGTTAAAGATGA
ACTCGCAGACATCATGAGTTCTATCAACGATCACGTCGAGTTAGCAGACT
ATATCATCAAATCACCGCCCAAAGAGAAACAACACAACGCCCTGGTGAGG
TGGTGCATGAGATGGTTTGTCTTGTATTACAACAGGGCGCAAAATAAATG
TTGGTTACTGTACTTCCAAAACGAAGAAGCGTTTCTAAGTGGAAAACTAC
CAAAAGGTAAATCTCTATTTAAATATATTCTACACGTTTATTTATAAGAA
CATCCAAAGTTTTTGAAGCTTTCGGATGTTCTTAACTTTTTGGGTTTTAA
GCCTTAAAAGGTTCTTAACATTTTCTTATTTTCACCATTTTGTGACCAGT
TTTACCTATTTTCCTAAAAATTCGGGTGTTTTTGAGTCCGCAAAGCCTTA
AAATGTTCTTAAATTATTCTGAACATTTTGGCCGTCGAAACCTCATGTTC
TTATATAGCTTGTTCTTATAAAAATACATGTAGGTGGTCTGGAAGCGAGG
CAAACAATCAATCTTTTTATTGATCTGTGACATTTAATGGATATTTAAGC
TGAGTGATTCTTTAGTCCACCACTTTTACTATACCTCTGTTTTAACTAAA
AAACCAACCTCTGTCATAAAGTAATAAAGTTTATTCACGTACAGCGTACA
GTCATCTTATAAAAAAGCGTGTAATTAATTAAAATCTCATCCAGATTGAG
CTATAAAATACAGCTTGATTTTCAAGACCATGCTATTAAATTTCAATTGA
TATAAAGAGTAATTTTGCCGCTCATTTTCTTAAGAATGCAAATGCATTAC
TCTCCTGGTTTAGCAACACGGTGAGAATCTTTTAAAAGTCAATGGGATAA
AATCAATGGAAACTGAATTGTTCAACTCAATAGGTGCCTAACCCTAACCC
GGTCTATAGTGTATATTCAAAGATTTTGATATATAATAGATCTTTTTTAG
AGTTTTTTGTTTTTCTAAAAAAATCGCTTTTTTGAATTGTTTGTGGAATT
GTTTCGGGGGTATTACAATGAACATCTCTAAAAAATTCCTCGAGCGAATT
CTATTGTAATACACCCGAAACAATCCCACAATGCATCGTTATTTTAGAAA
AATCAAAAACTCCGATAAGGTCTATTGCAAAGGTATTGGTTGAATTTTCT
GAAAAAAGTATGGAAAAGATTTGGCCAAAAATGAGGTGATAAAACAAAAG
ATTCTGATCAATATTGATATTTCTATTATAGGTAAAATCGATTTAAAGTT
ATCGAAGATCAAGGAACACAAAACACCTATGAACAAATATGAATACGTGA
TCGATGTCATAGCTATCAAACGTACCTTTCACCTCTGTTTTTTGAATCGG
AAAATTTATCAAAAATGGCTGACCGCGTTGAAAGAATGTCATTCGGAAGT
AGTAAGTGTTTTTTTTTCTTTGTCTAACGTTTAAACCCTCTAAATCCTAA
CCCCCACGAGATTATGCATTTTTGGGAGATATTTCCAATGTAGTTTACAC
CAATATAGTTCTCTCTTCTTTTCTGGAATTGGATGATATAGGTCTCTTTC
TAACTACAACATCTGCCAAAGACATTATTCTAGATCCTTAGTTACTCTAT
ACACCCCCTTCTCACAGACCCGGTAGGACTTTTTCAGACGGTGGGCATGA
AAATAACAAGAACTGCTCGATGGGGATTGATATCCCTCATACCTGGGGAT
TCAATTATTTTGTTTTCAAAGTCAGAAAATTCAATTGGGATGTGAAAAAT
ATCAAAATGTTTTGCAGTATGGATTCGTTTATTTGATTATTTTCAAAAAT
GGGGACAAAAATTGGAGTATAATTTTCCACCGGGGACGATTTTTTTGGAC
AATTTTTCCAGTGGGAAGGATTCCCAGTGGGTCTGTGAGAAATGGGTGTC
TGTGTGTAGAATCAAATTTAGAAACGAAGAAAGTGAATTAAATTCATCCA
ATAAATTGCGATTTGCAAATCCTCATTCTCTGAAACAGTGCTGAAAGGCC
GCGTTGCCCGAAGTTAATAGCATCTGCTATAATTACTTAATTCGTACCAA
GAAAAAAATCAACTAATTGTAATGCCACGATGTCGGTCTAGAGCCTGCCA
AAAAAAGACAATTCTTAACCTTGCTTTATAAGTGTTCGACCTATGGGGTC
ATCCATATAGTACGTACGCAGTGAAGGGGGGAGAGCGGGGAGAGGGGGGT
TTAGTAAAAGCGTACATCTATTATTTGAATGACATAATTTCTATTGTTCT
CTGCGTACAAGGAGGGAGGGGTATCAAATTTTTGGAAAATCTTTGCGTAC
GTACTATATGGACGGCCTCTATCGTTTGATTTAATGAAGGAAGAAGGTCA
CAATCCAATACAGTACATACATGACATTATCAACNACAATGAGATAGAGG
GTACCACTTTTTATTGTGGGTTTTAAGGGGTATCCGCTGGTACATGACAT
TATCAAATTTTCTTCACTTTCATCTTGCGATTTCCATAAGTAGATGTGAG
GTCTTTGTAACAGACAATATTTTTTCTTTCAGTGGTCATCACAAGTTCAA
CAAAAAGTTACAAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACACATACAATCAGCAGCAACAAAAACAACTTCCGATCGTTAACGACA
ACGACATAGAAGAAGATAACAATCTCGACAACGCCAATCCCGATCCCGAT
AACGATAACGACGACCATTATCTACACAGGCTGGACTATGAAGAGGATCT
ATCATCATCCATCACTAACTCACTTGGAAATCATAATGAAGACCTAGAAG
AAGAGGATGAGGAAGATCAAAGATACCTTGACAATGGCGAAGTTGATTTA
ATGGAATCGTTAAGAATAAATGACAATGGTGACAGTCTTGGAAATATAAG
AGAAGAAAATGATGATGTCTTTGATGGTGAGTGTTTATAAATCACGAATT
TTATGTAATAAAAGATACATCTTTCAGCAAAATTACAAAATTTTTCAAAG
TTTTGCTGAAATTTTAATTCCAAAACTATGCAGCTTAATAGTCAAATCTC
CCTTTCAGTCTTTCCAGCTCTTGGAATAAAACGATATTGATGATGCTATT
TTCAATCATTTCTGCTGCCATTTCTAAGATACAGTCATCCAGACTGCAGC
TCTGTGGATATTTTTCAAGCTAATTCTCTTTAGATTTAGGACACGTTCTT
CTTTTAGAAGGAATTTTTAGATATTTTCTTTGTTTTCTGTAGGGGTTGTA
AAAATAACGATATATACCCACTATTTTCTGTTGGGTGATAAAAGCGAAGA
GAATAAAAAAATTAAATGTTGATTGTATGATTTCATTTCATTTCAGAAAC
TGCTAGTATCTCATCCAATCGATCGTCTATTTCATACCAGAGCTACACTC
CACCTCCATCACGGTATCGAAACTCCATCGATGTCGGTGCCATGCGTAGC
CAACACCAACATTCACCATTCCTCTTAAACAATCGAAAAATGCCTTCAAG
ATCAACTACAATACCAAAAGATATAAATGAACTTTTACTTGAAGCCGATA
CCAAGCATGAGAAAAGATATGCAAGTTTACAAGAAGTTTCCACCACAAAA
CGAACATCTATATCACCATTGAATATCCACCTGGAAATGCTTGAACGTCT
GGAGAAAGCAGCTGCTAAAAGACCACTATCTGATGGTTCTGATTATGACA
TGGGAGGTTTTACAGGACCAAGGTTCAATTACTCGCATCAGTGATTGAAA
ATTAAAAACAGTAGTTGTTGATTGAAAGTCACTCATATTGAGTGAAAGAA
AATTGACCATGAAAAGCGGATTATTTTTCTAGGAAATACGTGGTAGTTTA
AGGTTTCTGTTATGTTCAGTTCATTGTAGAATATCGTGACATTCAAACTT
TATTTCTATATTTGAGTTTTTTCATACTATTTTATCTTTTTGACAAATTA
TATAGATTTTACGGGACAATATTATCTTTCTTGGTTGATGTAAATATTAT
TAATGTACATGTTTTTAGAAATAAAACTTAAAATTCATTCTTAAAAAGCC
TTTACATTCGCTGGAGTTGGTGATATGGAAATTAGCTTCCCACATCCATT
GGCACCTCCATCTTAGCACCCCTGTCTCAAAGCCCCGGTGAAACTTTTTT
CCTCAGTGGGGATAAAACTTCCTATTGAAATCCAAATGGGGTTAGAAAGT
TCATTGGGGATGGGTTTGGAGTGCAACTCTTAAACATTGAATTTCAAATG
GGGATGAAATCAAAGTCAATTTCCCAGTGGGGCTGACATTTCAGGGTATT
TTCCCACTGGGGACCAAATTTTCCAGTGGGGCTGGGCTCCCAGCGGGTCT
GTAACACAGACATGAAACTCTACCAAAAGAGTTCTCCCGGTGAAACAATA
CTCAGAATATATCATTTTAATATCATTCTATCATTTCCACCTGGGAACGA
TCCCAAAGCCAGGATAATTCTCGGTGAATTTTTTAGCTATACAAAGAAAA
TTCGATATTTTGATTCTTCCCAAATGGGATGAGCTAGAGTTTTTACAAGA
TACTTCACTAATTGGTCATTTGAAGTGATAGCGATGACGCGTTCTTTAGA
ACAAGTAACAAAATTGTTTTATTACTGGTTAACGACCAACCAAATCAAAT
AAGAGCTTGTAAAAACTCCAGCTTGTCCCTCCCAAATAGGTACAAAACAT
TAAATTTCACGAAAAGAAAATTAAAACGCGGTCATTATCCTTATCAGCTA
CCAACAATAATCCGTTAAAAACACAAACATCATTTGGACATTTAAACGAC
CTCAGAGATGTTCCATGGCGTCCAAACGAAGTTCGAAAATCACCATTTTC
TTTCAATACACATATTCGGTGATTACCAGTGTCACAGACAATAATATGCC
GAGAAACTTGGTCAGTTACGCCATCAGGTTCATCAGAAGAATCATCGCAG
CTGTTTTCACCAGCATCAATGGCCGTGCATTTATTATGAGGCTCGATTCC
AGCTCCAGCATCAACGGTTGTTGAATCATCTTTGACCACAGAATCAAAAT
TAGCTTGTGCTTTTTTCAATTCTTCAACAAGATCTAAATCATGGATATCA
AGTGATTCCAAAGAAAAGTCTGATACATCGAATCCATTTAAGCTCATATC
TGAAGCATTTCTTCTGAGACGGGTTGCATCCATTGATACGAATTGACAAG
ATTTGGATTTCTCAGTTTCCAGTTCTGCAACTACAGACTTTTCATTTTGA
TCAAGGCTAGTGAATGAACCATCGTCAAAAAAAATAGCAGTGGGCTGAAC
AAATTCACCATCGCCAATCCCCAACGATCCAACAGTTTGACATTCTAAAA
CATTGCAAGCGGATATTCTATACATATGAACACTGTGTTCACCACAATCA
GTCACTAAGATGTTTGATTCATCTTGGATGGTGAATTTGGATGGAGTGAC
GACATACTCTGATAAATCAACCATGTTTTTGTAATGTCCCTCCAAATCAT
AGACGTGTATTCCCTTATTGACCTTATCCAAAAGATATAATTCTGATGTG
TGAACATTGAACTTGATGCACGATATCTCTGGTAAATCCATCGTCCTGCC
AAGATAATGTGGTACAAACTGTAAGACCAGTTCCGTTTGTTGATATTTCC
GTATAATCCGACGCCCGGTGACATAGTAACAATTTTCGAGATCTATTGCC
AAGTCAACAGGCTCTAAAGTATCTAACCCTATTTCAAAATTTGTTTCCCC
GTTAAATCCGATATTAACAATCCGATATCCTGTTTTATTACATCCATCCA
TCACAACGAGATTTCCATTTTGGTCGACCGCAATGAAGAAAGGTTGATTC
AGTTTTGTTTTGGCGCTTTCTTGGAGATCATTTTTGACTTCATTTCCAAT
TGAATATATTTTTGAACCAAGCATGTCGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013507XLOC_013507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024050-exon-sc0000471-1575043694:68295..68600TCONS_00024050-exon-sc0000471-1575043694:68295..68600Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1575043694:67100..67269TCONS_00024050-exon-sc0000471-1575043694:67100..67269Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1575043694:65575..65968TCONS_00024050-exon-sc0000471-1575043694:65575..65968Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1575043694:62569..65154TCONS_00024050-exon-sc0000471-1575043694:62569..65154Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1510915933:68295..68600TCONS_00024050-exon-sc0000471-1510915933:68295..68600Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1510915933:67100..67269TCONS_00024050-exon-sc0000471-1510915933:67100..67269Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1510915933:65575..65968TCONS_00024050-exon-sc0000471-1510915933:65575..65968Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1510915933:62569..65154TCONS_00024050-exon-sc0000471-1510915933:62569..65154Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1491911889:68295..68600TCONS_00024050-exon-sc0000471-1491911889:68295..68600Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1491911889:67100..67269TCONS_00024050-exon-sc0000471-1491911889:67100..67269Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1491911889:65575..65968TCONS_00024050-exon-sc0000471-1491911889:65575..65968Clytia hemisphaericaexon
TCONS_00024050-exon-sc0000471-1491911889:62569..65154TCONS_00024050-exon-sc0000471-1491911889:62569..65154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000471supercontigsc0000471:62569..68600 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.24561	1.97172	1.26839	1.0032	2.12151	1.25029	3.44835	3.13811	2.44282	3.95971	2.4748	5.17947	4.56342	4.39549	1.47141	3.46435	3.13723	5.23793	4.63588	5.52293	4.04755	5.01885	6.1569	6.5886	11.1986	7.65151	11.9809	5.92765	3.35417	3.14596
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001258NHL_repeat
IPR0110426-blade_b-propeller_TolB-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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