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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024054 ID=TCONS_00024054|Name=TCONS_00024054|organism=Clytia hemisphaerica|type=transcript|length=866bp
GATTTTTAGCTGACAAGAGAGCAACAGCTGGTAAGAGAAGTGATGGAATT
AAAAATGAAGTCTTTGATTGTACTTTTAAGTTTGGTAATAACATATGCAA
AAGTGTGGTGGCTTGGGAAGCAAATGCAAGACAGATCTGTTTTCGGGTGC
AGATTTCAatgtttgtgaaaaatttgtGCGGTGCGAATATCTGGAGGATG
GCAATAAACCACGAGAACAATGTGTCCAAAGGTGTTCGTATACGGCGATG
GGATGTGAGAAACAATATCCCGTTTCGATGTGGTGGTTTAGACCACTACG
AATTGCTTGTGGACAGACCGCCTACGATTGCTTGAACAGGTGTAGACTGG
TTCATGACAGTGTCGGACGAAAAAGAACCATGTTTAAAGATTTCGATAAA
TTTGAAGAACAAAAAAGAGATCTTTATGAAGATGCGAGAAGAGACAGAAG
AATGGAAACCAGACGGCCACAACATGACGACTTCAATGAATTTTATGATT
TCGAATTTGacaaatattaaattatttgaCACCATGACAGTGAAATTTTA
TCATTATAACAACTATATTCTATGCTTGACTATTTTAAACACCTCTGTCT
AATAGCCCCGGTGTTAGTTTTTCCATCActggggatgaaattttttatAG
AAACCCCAATGGAGATAGAAGTTCTATTGTTCCCTGATCAAAAATTGTAg
cggggatggttttgaagcgcaattttttccattgaatttcaagttgggat
gaaataaaaatcaatttccaaGTGGGAAGAAATTATAAGATATTTTTCCG
GCGAGGACAAAATGTGgggcaattttccagtggggctggggtccgaGCGG
GTCTGTGAAACAGGTG Run BLAST on NCBI transcript from alignment at sc0000471:164837..169933- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024054 ID=TCONS_00024054|Name=TCONS_00024054|organism=Clytia hemisphaerica|type=transcript|length=5097bp|location=Sequence derived from alignment at sc0000471:164837..169933- (Clytia hemisphaerica)
GATTTTTAGCTGACAAGAGAGCAACAGCTGGTAAGAGAAGTGATGGAATT
AAAAATGAAGTCTTTGATTGTACTTTTAAGTTTGGTAATAACATATGCAA
AAGGTAAAGAGATATTTAGGTATACTTTTGTCAACAAACACTAGGTTTTC
CTTCCCAGCTGACACACAACGTTGTTTCAACGTTGATCTAACGTTATATG
GACGTTGTGAATATTAGAAAAACGTTGAAACGACGTTTTGTGTCAGCTTG
TGTGGAAAAATACCAATTTTTAGCGCTTTTGACTTTGAGCTTCTTACAAA
GTCTTCCTGGAAAGTAGACAAACTCCTTCAAATATTTTTTCTGCATTTGG
TCTGTACTAAATTTGGTCTTATTTGTGTGGATATTCATTCGTAGTCTAAA
CTCAACTAATCAACTCTTCAGATGACTCCAAAGCTGAAAATTGACGAAAA
AAAAACAAATTCAAAAATTTTGGTTGCTAGGCAACCTAGGCTGGTTGCTA
GGAGCAAAATATCATTAGCTTTTGAATATGTATTCACAGACTCTACATTT
TATATGCTTTCAGAAAATATATAGTTTTACAGGTGTATATAAAACCATCA
AAAAGTCATTCTTCATCGCATTCGCCTAAAAGTCAAGGAACCCTAAAATA
CTAAAATAATGTGCGGATGCAAAGGGTTAAAGTATAAACTGTTTGAATGG
CTTTTATCAAGCACCTTTGAAACTCCTTAACTAAAATATATCCAAAAGAT
GAGGTAATATTGGCATGTTCCATAATGTGGATGCGTAATTTCTATGGACA
CTTGTCTTTACGCACACCCTGAAAAAGACGTCAAAACAACGTTTTTCTAA
CATATTCATAACTGTCATTTAAGTCGAGACAGCGTTCTATGTTTGCTGGG
TACTTATTCAATTTTTAAATCATATCATCTCATTTTTCAGGTATTGCAGC
TCAAGGACCTGTGAGTAAAATGCAATTATTTCATTAAACATTAAAAAGTT
TATTTTCAACCCCTTGCATTTTATTTTAAAGCTGAGAAATTAAAATTTCA
AGTAATGGTAACAATTCTTCAGCCCCTACTCTCGGATACCTAATAGCCGC
CCCCCCGCTAATTTGTAATTAATTTTTCAAAAATTTTCTACCCAGGACAT
TTTCATTTTAACCCCTCCGCTTATTCTAACCATCCCGGCTATTAGGTACG
CGCTCGGGTGAAACAAGGCATGTCCCAAATATATTTTGCGTGACGCACAC
CGCTTCCCATTATACATTAACTTTCATATTTAGCTCATATCGTCTCAACG
AGAGGATTTCGAAAAGTGCTGGGTCAAAAATTTACATCAAGCCAATCTCA
AGATATCGGTCAAAAACTGATTTTGACGTTATCAAATACATGGAAAAAAA
CACGTCAAAAAGACAATTTAAATGACGTCATTATTGAAAAAAGGCGATAA
TTCCGATTAACTTACTACAATCAAAGTAGAGTTTTGACTGGAGATGTAAA
TTAACGATTCTAAAATATTTCATGAAAAAAAATTGAAAATTCATGATGAC
CTCAGCATTTTTTGACGTATTTTTATTTTTCCCGACAACAAATGACGTCA
TTCAAATTTTCTGAAAATTTTTGAACAAATATTTCAGAATCATTAATTTA
CAACTCCGGTCAAAATTTGGTGTTGATTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCATTGAACACAAACTTCCGTTATCTTAAAAAGACATATCATCGAGGCTT
ACAGACACAAAATTTTGACTAATGTAGAAAGTTTAGAAGTATAATTTTTA
ATATTGTATTCGGCATTTATTTTAAGCCAAAACGATGTCAGGAATTAACC
CACATTGTAGTATTNGATATGATTCTTTTGAGCTATATATGAACGTTAAG
GAATAATTGGAAGCGGTGCGCGTCACGCAAAATATATTTGGGACATGCCT
TGTTTCACCCGAGCGAAAGTAAATATTGACGAATGTGCACGAAATCTATT
ATTCTGTCACTTAGGGAAATAATTGTGAATATTTCCCATAGTGTGGTGGC
TTGGGAAGCAAATGCAAGACAGATCTGTTTTCGGGTGCAGATTTCAATGT
TTGTGAAAAATTTGTGCGGTGCGAATATCTGGAGGATGGCAATAAACCAC
GAGAACAATGTGTCCAAAGGGTGAGATGATAAATTTGTAGCCTATTTTGT
TAACTACCAAGTTCATTGTCTATAGTCAGGGTTATCCCTTTGTAAGCGCT
GTTTTTTTTTTGAAAAAGTTAAAATTGTTTGTTTTTCCTCTAGTATTTGG
ATTGGAATTTTTTTGGTTTTACTAAATTTAATTATAAACTGTACTGAGAA
TTTTAAAACTGTAATGCACTTAAGAGGTGCCCTATACAAATCTTTTTATA
AGAACAAACAGTATAAGAACATAAGGCTTCGATGACCAAAATACTAAGAA
CATACTTAAAAACATTTTAAGGCTTCGTGGTCTCCAAAAGGCCCTATTCC
TTAGGAAAATACACAAAAATACTCAAAAAATGGCGAAAATAAGAACAAGT
TAAGAACATTTTTAGGCTTAAAACTCAAAAAGTTAAGAACATTCTAAGAT
CCAAAAATTCTTATAAAAATAAACTGTATATTAGAATCTAGTTTATACGT
AAGAAATCTCAGCGCTTTTGAAATTTTAGAGAAGACGTATATATTCATCA
ACTAAATGTCTTTCTTGTTTTCCAGTGTTCGTATACGGCGATGGGATGTG
AGAAACAATATCCCGTTTCGATGTGGTGGTTTAGACCACTACGAATTGCT
TGTGGACAGACCGCCTACGATTGCTTGAACAGGTGTAGACTGGTGGGTGT
TGTGGCGTCAAAAATTTGGCGCCCTTTAAAAGATATTCTGTTTTTCTAGT
GAGGATTGGAGTGGAGTGTTTTCTGCACCCCTCTCACCCCAATAACAGAG
TTATGCAAGAAAAATTATTTATTCCCAATACAATGCAATGCAAAAGAGAC
TTATGAAAGTCAGCCTTTTTTGTAATTAATAAGGACTTTTTTACGTTTTA
ATGATCGCTGCCTAAGCTGGGTTNCTTAGGAAAATACACAAAAATACTCA
AAAAATGGCGAAAATAAGAACAAGTTAAGAACATTTTTAGGCTTAAAACT
CAAAAAGTTAAGAACATTCAAAGATCCAAAAATATATATTAAAATCTAGT
TTATACGTAAGAAATCTCAGCGTTTTTGAGATTTTAGAGAAGACGTATAT
ATCTTACTATACTAAACGAGTTTATGAAAAATGTCTGTAACGCTAGCCCA
GTAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTACACT
GCTATTTGTAAACGAAAAAAGTTCTGACGTCAATTTCATGAAAAAGTACT
GCGACGTCACAAAGTTTCAAATAAAAAGGTGTGGCATTTTTATTGCACGA
TTTCGAATTATTTTATATCAAAACACGCAACAAAATCCAACATTATTGTT
TGATGATTAAACTTCGTCTAACATTATTTAAAAAGGTTTCAATGTTGGTT
GCATTGCATATGCACCGGTCTTAAGCTGTCTGCATGTGAAGCCAACAAAC
GGGAAAACCTTCAGTGCTCAATCGCAAAGCGCGATCCTCTCCTTCACAAC
TAAGACTTTTTCTTTCCTAGAAGCAANCAATATTGTGTGCCAGTTGGGTA
TCCAGGAAAACATTCAACATTCTAGATTATTCTATTCTAGATTATTAAAA
GAAATTTTGTATTTCATTTTATTTATTCAGGTTCATGACAGTGTCGGACG
AAAAAGAACCATGTTTAAAGATTTCGATAAATTTGAAGAACAAAAAAGAG
ATCTTTATGAAGATGCGAGAAGAGACAGAAGAATGGAAACCAGACGGCCA
CAACATGACGACTTCAATGAATTTTATGATTTCGAATTTGACAAATATTA
AATTATTTGACACCATGACAGTGAAATTTTATCATTATAACAACTATATT
CTATGCTTGACTATTTTAAACACCTCTGTCTAATAGCCCCGGTGTTAGTT
TTTCCATCACTGGGGATGAAATTTTTTATAGAAACCCCAATGGAGATAGA
AGTTCTATTGTTCCCTGATCAAAAATTGTAGCGGGGATGGTTTTGAAGCG
CAATTTTTTCCATTGAATTTCAAGTTGGGATGAAATAAAAATCAATTTCC
AAGTGGGAAGAAATTATAAGATATTTTTCCGGCGAGGACAAAATGTGGGG
CAATTTTCCAGTGGGGCTGGGGTCCGAGCGGGTCTGTGAAACAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024054-exon-sc0000471-1575043694:169831..169933 | TCONS_00024054-exon-sc0000471-1575043694:169831..169933 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1575043694:167164..167292 | TCONS_00024054-exon-sc0000471-1575043694:167164..167292 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1575043694:166492..166608 | TCONS_00024054-exon-sc0000471-1575043694:166492..166608 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1575043694:164837..165353 | TCONS_00024054-exon-sc0000471-1575043694:164837..165353 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1510915933:169831..169933 | TCONS_00024054-exon-sc0000471-1510915933:169831..169933 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1510915933:167164..167292 | TCONS_00024054-exon-sc0000471-1510915933:167164..167292 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1510915933:166492..166608 | TCONS_00024054-exon-sc0000471-1510915933:166492..166608 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1510915933:164837..165353 | TCONS_00024054-exon-sc0000471-1510915933:164837..165353 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1491911889:169831..169933 | TCONS_00024054-exon-sc0000471-1491911889:169831..169933 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1491911889:167164..167292 | TCONS_00024054-exon-sc0000471-1491911889:167164..167292 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1491911889:166492..166608 | TCONS_00024054-exon-sc0000471-1491911889:166492..166608 | Clytia hemisphaerica | exon |
| TCONS_00024054-exon-sc0000471-1491911889:164837..165353 | TCONS_00024054-exon-sc0000471-1491911889:164837..165353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000471 | supercontig | sc0000471:164837..169933 - |
Blast
The following BLAST results are available for this feature:
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