TCONS_00024058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024058
Unique NameTCONS_00024058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024058 ID=TCONS_00024058|Name=TCONS_00024058|organism=Clytia hemisphaerica|type=transcript|length=1680bp
CTCCtatctaaaatattttgttattgttcttttctttttccttcaaagcC
GTCTTTTATAGTTctgatttaatttaaaaaatcagtttttaaatatattt
gtCCTCTTGACTCATAGAAAGTTTCTTAGTTGACATCAGATTGCAAGAGG
GTAGCAACAACGAAGAGACCCAACTTAAAATGAAGTCCTtgattgtattt
ttatttttggttatCTCACTCGCAAAAGGTAATGTATTAAAAGGACCATG
CGGCAGTTTGGCAACCAAATGCTACAATGATCTTTTATTCCGGGGTAAAG
ATTTCATTGTCTGTGAAAATTTGTACGATGTGAATATCTGGAGGATGGCA
ATATACCACGAGAACAATGTGTCCAAAGGtgtGCAGATATAGCGATAGAT
TGTGAAAAACAATACCCCTCTTGGATGTGGTGGCTCAAATTTAAGCGAAC
TGCTTGTGGTACCAATGGTTATAAATGCTTGAATGGATGTAAACAGAAAC
ATGACAGCGCTGGACGAAAAAGAACGATGCTTAAAGATTTCGGTCAATTT
GAAGAACAAAAAAGAGGTCTTTATGAAGATGCGAGAAGAGACAGAAGAAT
GGAAAACAAACGGCCACAACATGACGACTTCAATGAATTTTATGATTTCG
CATTTGACAAATATTAAATTATTGTCGAAAATTTGTTGTACATTGTTTCC
TTTTGTTATCGAGCACTATTTTCTTCATCGTTCTccatgatttgatttga
tttttttgtgcacGAAAGTTTTTATTTATATCGGGTACTATATTGAAGAC
GGTGAGTTTTGCACAATCTAAGATCAGATTGGGTTCAAAAATCTGGTAAT
GTCCCGCACCATGTCAATTATTTGTTCTATCTCGAACCCAAATTAAGAAT
TCATTGTCTCTTGTCACATTGTCACACCACACACCTATGTATCAAACCCc
aacttttaaaaattatttcactgACATCAATTTCCATTTTCCTCGCGGAA
AACTTGTATGCTTAAAAAACGTTCCATTCTCCCGCCAAAACTGATTCTAA
ACGTTTCCAAAATGGTGGCTGTGAACAAGAGCATCTTATTGAAGAAGAGG
CCGGTAGTAAGCATGTtattaaagaagatttttcaatttgagACATTTTG
AGAGCGGAAAAGGAAAAAAGTTGGATTGGCCACTTTATAATCATTTAATT
GACTATCATTTTAATGGTGTTTACTTTATCTTATGTAAaatcttttgtaa
tttttttcttgagaCCTTTTCCAGGATAATacatacttttttttataaga
atgatgtaaatccatttcatcatggatattcttaacttaacCTAAAATAT
TATTTATAGCATCCTTAGGTTAAGAtctaaatcttaattttttggccatt
ttcatcatggacattcttataaggtgtattcttatataaaaaacgttgAA
TGTCCGTTTAAGGTCTCTTTTAGCTATTAACCACTTCAGTTGTAAAGAAG
CTCGCATGCACTGCGGCGGTAAGTTTTAAGTGGaaaaatttctcagaaaa
aggccaaaagttttcatttttgattcttAATCtcaatagatttaaaaaaa
ttcatgagtATTGAAAAAAGGGATAAACCTCCTTTATCTCGTCATATATC
CGCAGCATATTAAATTATTGAGCAGTCGAG
Run BLAST on NCBI

transcript from alignment at sc0000471:170962..177339-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024058 ID=TCONS_00024058|Name=TCONS_00024058|organism=Clytia hemisphaerica|type=transcript|length=6378bp|location=Sequence derived from alignment at sc0000471:170962..177339- (Clytia hemisphaerica)
CTCCTATCTAAAATATTTTGTTATTGTTCTTTTCTTTTTCCTTCAAAGCC
GTCTTTTATAGTTCTGATTTAATTTAAAAAATCAGTTTTTAAATATATTT
GTCCTCTTGACTCATAGAAAGTTTCTTAGTTGACATCAGATTGCAAGAGG
GTAGCAACAACGAAGAGACCCAACTTAAAATGAAGTCCTTGATTGTATTT
TTATTTTTGGTTATCTCACTCGCAAAAGGTAAGGGTGTATTTTTTTTAGG
ATGGACCATTTATGTATTTTCTATTCCTAAATAAAAAATCATCCAGTTGA
GAGCATTTGGGATAATTTATTCCTGATCCTCTTTGAGTCTTTTTGAACTG
AGGATTGTAGTATGTTAATTTGATGTTATAAAATTTTAATTTTTCACGGA
ATGTACTTTTGATGGCTAAGCGACAACAAAAACTGTCAAAATTGGTTCAA
TCACACAAAAATAGCAAAAATCTTTGAAATCAAGATATGGCCAAAATCTT
GATCACGCTATCACACCCCTGTGTCAGTGATCCGGTCAGTTCCACCCGGT
GGATAACCCGTTGAAGAGAATTGCCGAAAATTGCCCAATTTTAAGCCATA
GTTGGATATTGACTGAACCCGTAGTTTAGCGAGCTAAACGACTAATTCAG
ATATAGTAGAAATAAAGCAAAAAGTAATGGAGGGAACAAATTTTAGTTTA
TACAAACTAAATCCCGTCACAATAATCGAATTATCATATAACGCCTATTC
TAATGTATTACACGCAATATAAACGAATCCACTGAACCCGGTAAAAATTA
ATCAAACTTTTCCACCCCTGGGCAGAATCTGGAAGTTTATGGTCATACCC
GCCAGTCATTGTTAACATTAGGTAGGTCAACCCGGTAAAAGTTATTGGAA
TTTGTAGTCATATGCGCTTGTCATTAATTACATTATGTAGGCCAACCCGG
TCAAAAATTCCAGATTTAGCGGCGAGCAGCCTAGTAAAGTAAAAGTTTGC
CTTAATTTTTTATTCGCCTTCTCATCGACAAATGTCACTGTCTTTTCCCT
AGTGAAAAATTATCTTTCTTAAAATCAGACCCGTGAAGTTTTTTAATTTT
CATAGTCCCCTCGGTGGTTTTAAAATGCCACCCGGGGTTATCAAATATGG
TCATCCCGCAAACTGAAAATTTTGTTTAAAGTAACCAGCCCTAAAGATAT
ATATATTTTGTCATTTTTCTTTCAGGTAATGTATTAAAAGGACCAGTAAG
TACAATACATTGTTTTCTTCAAATAATTCTTGTTATCATTTACTTCACCA
ATAGAATCTATCGTTTTTTTATCATGTGATTTTTGCACTTGCAACATTAC
TCTTCTGTGCTTAAAATTACTTTATAATTACCCCCCCTATTTTATGACTT
TTTGCCTAAAAGTGTCAAAAACCTTCATTTTCTCAGGGAAATTCACCAAA
ACCACTCCAATATCACGTAATTATGACCCCCCATTTTATGATTTTTCTTC
CAAAATTTCATCTCCCCTGCTTATTCTCCCCCATACAATTAAGCACAGAA
GAGTACCGTACTCAACCTCAAAAAGAATTCAGTCGCAGTCGCACTAAATT
TAGGCAATATTTGAAGATATTATATAGCTATAGTGCCCTATAGTGAGCTG
GTCGTCACCCAGCTGACACACAACGTTGTTTCAACGTTCATCTAATATTA
TATGGACTTTGTGAATATTAGAAAACGTTGAAACGAAGTTGTGTGCCAGC
TGGGCAATCATTTTCTCTGATAGCACGAGGACAGCCAAGTTATACTGCCT
ATTTTGATTGATAAATTCAGTGCGGGGATCTCGATTCAGATTTGTCTTTT
CAGTGGTGAAAAAAAGGAGTTCTTTTGACAAAAGTTTTCATAGCCTCAGT
TTTCTGACAATTTTATAATCCTAGTGCTGTAAAGCATACGCACTTTTTCT
TTTATAAGAATATACTTTATACAAAATTAATAATACTTTATAAAAATATA
TATAAGAATATTTATGATGAAATTGACCCAAAAATTTAAAAAATGCCAGA
AAATCACCATCATGAAATTCGGCAAAAGAATGATCATTTTATAGCTTTAT
TACCTGTAAATTGCCAGTTACCCCCTTCCAATAAGGTTCAACACTTTCAC
AAAAATGCTATTTCACGCTTCAGGGTATGTATCACGCATGTTAAGTTCAG
GTTGGATGCAACTTTTCGACCGTAGCTGCCAATTACCGCACGGGCATTTT
TTTGTTCATTTTACCACCCTAAAACCGTCCCAGTCTTTTTTTCTCACCTA
GACAATAGAAAAAGGTGTTAAAAAAGGATTGGATCGAGTTTAGGGGGAAA
AATGCCTGCGCGGCATGATTTTCCCAAAAAGTTAAGAATATCCATCATGA
AATGGAAAAACACCATCCTAATAATTAAAAGCATGTACCTAATAGCCGTT
CCCCCCCGCTAATTAATTTCCACCCAGGACATTCTTATTCCAACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCCCCCCCCCCCGCTTGTTAGGTTTTGAGATTTT
TTCCAACCCCCCACTTATTCCAATCCCCCCGGCTATTAGGTACCCGAGAG
TAGTGCATTTTTTACCCATAGTGCATTTCACCTATACAATGCATTTTTTA
CTCATAGTGCGGCAGTTTGGCAACCAAATGCTACAATGATCTTTTATTCC
GGGGTAAAGATTTCATTGTCTGTGAAAATTTGTACGATGTGAATATCTGG
AGGATGGCAATATACCACGAGAACAATGTGTCCAAAGGGTAATTATCCGA
TCCCAGCTGACACACAACGTTATTTCAACGTTCATCAACGTTATGTGGAC
GTTGTGAACGTTAGATAAACGTTGAAACAACGTTGTGTGCCAGCTGGGGT
ATTTTAGATTGGGGATTCAATAGATTGCTTAAAAAGAATGAAAGTCGGCC
TGAGATATGCTTCATCCCTTCAATACTCTTGTCTCCCGAATAGACGCCCC
CCTGCTAATTGTTAAGAGAAACAAAGCCATCCCCCGCTCTTATTAAGACC
CCCCTAATTAAATTCGACTAATTCAATATTTTATTACAGTGTAGATAGAC
CTTAAACTTGTTAAAGTTTTCATTTTTGTTAGTATTGGTTCTTATTTTAC
GTGTTCATTTCTTTTTTGTTGTTGAAATTGATATCAGTTAAAAAAAATGC
TGTCTTCAAATTCCCCCCCCCCCGCTTATATTCCATCCCCACGCTAATTA
GAATTTAGAAAACTGCGTTCGCAGACTTACTTATCGCTACTTGGGTTTAA
CTTATCGGTATCGGTAACTTTTTATTTTCAGTGTGCAGATATAGCGATAG
ATTGTGAAAAACAATACCCCTCTTGGATGTGGTGGCTCAAATTTAAGCGA
ACTGCTTGTGGTACCAATGGTTATAAATGCTTGAATGGATGTAAACAGGT
GGGTAGCATATTTTTAATTCATTCTTTATATTTTAGCTGTCGAAGCCTCT
TGTTCTTGTACACGTTTTTCATAAGAACTACATAAGAACAGGCTTTGAGG
ACAAAATACCATTAAGAACAAGATGTTAAGAACATTTAAGGCTTTGCAGA
CCCTAAAACACCTAATTTCTTGGAAAAATGAACAAAAAAACTCACAAAAT
GGTGAAAATAAGAACATGTTGAGAACATTTAATCCTGTTCGTACTAGGGG
GGGGGGTGTTTCTGTTTGGTAGTGAAACTATTGTTAAAAGCTCCTGAAAT
AATACAGCTTTTGGCATGAAATTTTCTGTAAATTCATAACTTTTATTTAG
CTTCAAAATAAAAACAAATTTGACACCTAAAAATTTTCACACCTTGAGCA
TGATGACATTTCTGACAGTAAGGTGTTACAAAATTGACACATTTCCTTAC
CAGTTTACCTTTTATGTCAAATATATCGTTTAACCCGTAATTTCTTGAAT
ATTTAGGATAAAATAGCCATTTTAGACGCAGGGAACATTTTCTAAAGCCT
TTGTTTGAATACAACAGCTAGTTATAAGAACAAAGGAAATTTTCGGTTTT
TGCTCACTTTGGGCATGATGAGTGACGTCATCAACAATATTTTGTCAAAA
CTTACCTTATATAAGAAGAATCTTGTGTTTCAAATTTCATCCAAAAGAAC
AAATAGATCATATAAGTAATGGTGTGGTGCAGGAACACCCCCTAGTTTTG
AACCGCCCCTTAAAGCCTAGTATGAATAAGTTTAAAACTCCAAAAGCTAA
GAACATCCGAAAGCTTCAAAATTTTGGATATTCTTATAAAAAATGTGTTT
TTTTATCTGTCGAAGCCTCTTGTGTTCTTACATAGTTTCTTATTATAAAA
AAATGGACCCTGCGTGGGAATCGCTTTTTCAAAAATTTTGCCGACATTTG
CGATAAAAATGTCCTTGAATGGGACTAAAATTCCCAAATTTTCTCAGATT
TTCTACTTTTCCCAAAAATTTTCCAAAATAGACACCCTACGAGGGACTGA
TTTTNTTCAAAAATTTGCGAAAAAAATGTCCTTGAATGGAACTAAAATTC
CCAAATTTTCTCAGATTTTCTACTTTTCCCCAAAATTTTCCAAAATAGGC
ACCATACGAGGGCCTGATTTTTCTATTTTGGTGTTTTTGCGACCCTACCT
GGAACTAGTAAAGGTTAAAAAGGTACCCTGACCAGCGGTGCATCCCCGTA
ACACATTTTACCCTATCCCCCCCCGGTGAAAAACACATTATTTGGAAGTG
AAGATTGAAATAAGCACTGGTGGGTGTTTTCGAATGATGATCGTTTCCCT
TTGAAATTACATCTTCAAAGCAATTCATTTTGTCAATTCTTTAGAAACAT
GACAGCGCTGGACGAAAAAGAACGATGCTTAAAGATTTCGGTCAATTTGA
AGAACAAAAAAGAGGTCTTTATGAAGATGCGAGAAGAGACAGAAGAATGG
AAAACAAACGGCCACAACATGACGACTTCAATGAATTTTATGATTTCGCA
TTTGACAAATATTAAATTATTGTCGAAAATTTGTTGTACATTGTTTCCTT
TTGTTATCGAGCACTATTTTCTTCATCGTTCTCCATGATTTGATTTGATT
TTTTTGTGCACGAAAGTTTTTATTTATATCGGGTACTATATTGAAGACGG
TGAGTTTTGCACAATCTAAGATCAGATTGGGTTCAAAAATCTGGTAATGT
CCCGCACCATGTCAATTATTTGTTCTATCTCGAACCCAAATTAAGAATTC
ATTGTCTCTTGTCACATTGTCACACCACACACCTATGTATCAAACCCCAA
CTTTTAAAAATTATTTCACTGACATCAATTTCCATTTTCCTCGCGGAAAA
CTTGTATGCTTAAAAAACGTTCCATTCTCCCGCCAAAACTGATTCTAAAC
GTTTCCAAAATGGTGGCTGTGAACAAGAGCATCTTATTGAAGAAGAGGCC
GGTAGTAAGCATGTTATTAAAGAAGATTTTTCAATTTGAGACATTTTGAG
AGCGGAAAAGGAAAAAAGTTGGATTGGCCACTTTATAATCATTTAATTGA
CTATCATTTTAATGGTGTTTACTTTATCTTATGTAAAATCTTTTGTAATT
TTTTTCTTGAGACCTTTTCCAGGATAATACATACTTTTTTTTATAAGAAT
GATGTAAATCCATTTCATCATGGATATTCTTAACTTAACCTAAAATATTA
TTTATAGCATCCTTAGGTTAAGATCTAAATCTTAATTTTTTGGCCATTTT
CATCATGGACATTCTTATAAGGTGTATTCTTATATAAAAAACGTTGAATG
TCCGTTTAAGGTCTCTTTTAGCTATTAACCACTTCAGTTGTAAAGAAGCT
CGCATGCACTGCGGCGGTAAGTTTTAAGTGGAAAAATTTCTCAGAAAAAG
GCCAAAAGTTTTCATTTTTGATTCTTAATCTCAATAGATTTAAAAAAATT
CATGAGTATTGAAAAAAGGGATAAACCTCCTTTATCTCGTCATATATCCG
CAGCATATTAAATTATTGAGCAGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013510XLOC_013510Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024058-exon-sc0000471-1575043694:177112..177339TCONS_00024058-exon-sc0000471-1575043694:177112..177339Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1575043694:176095..176114TCONS_00024058-exon-sc0000471-1575043694:176095..176114Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1575043694:174202..174332TCONS_00024058-exon-sc0000471-1575043694:174202..174332Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1575043694:173542..173658TCONS_00024058-exon-sc0000471-1575043694:173542..173658Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1575043694:170962..172145TCONS_00024058-exon-sc0000471-1575043694:170962..172145Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1510915933:177112..177339TCONS_00024058-exon-sc0000471-1510915933:177112..177339Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1510915933:176095..176114TCONS_00024058-exon-sc0000471-1510915933:176095..176114Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1510915933:174202..174332TCONS_00024058-exon-sc0000471-1510915933:174202..174332Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1510915933:173542..173658TCONS_00024058-exon-sc0000471-1510915933:173542..173658Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1510915933:170962..172145TCONS_00024058-exon-sc0000471-1510915933:170962..172145Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1491911889:177112..177339TCONS_00024058-exon-sc0000471-1491911889:177112..177339Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1491911889:176095..176114TCONS_00024058-exon-sc0000471-1491911889:176095..176114Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1491911889:174202..174332TCONS_00024058-exon-sc0000471-1491911889:174202..174332Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1491911889:173542..173658TCONS_00024058-exon-sc0000471-1491911889:173542..173658Clytia hemisphaericaexon
TCONS_00024058-exon-sc0000471-1491911889:170962..172145TCONS_00024058-exon-sc0000471-1491911889:170962..172145Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000471supercontigsc0000471:170962..177339 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.31914	0.221789	0.354988	0	0	0.0567098	0.155058	0	0.0896597	0	0	0	2.80353	1.66137	0	0	7.80773	9.59438	6.57627	6.53598	23.4835	23.7887	26.5171	32.4318	26.1975	26.8936	4.74118	0.379705	0.0590976	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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