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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024094 ID=TCONS_00024094|Name=TCONS_00024094|organism=Clytia hemisphaerica|type=transcript|length=500bp
AAAGTCAAGCCTTATTTGCTCATAACACATTACGTAACCTACACGGTGCA
CCTGCGATGACGCTCGATTCTCAGCTGTCACAACAAGCGGCCGCTTATGC
GCAGGAGATTGCCAACCTTGGGAAGCTTCAACACGCAACTAATTTGAATG
GCATGGGAGAGAACCTTGCAATGTTTTGTGGGTCGTCAGTTTCTGATTAC
AAAGGAGATATTCCTGTTACTAATTGGTACGCAGAAGTGTGTAAACCAGG
GTACACGTTCAGCCCACCCACTGGCTTCAGTAGCGGTACCGGCCACTTCA
CACAGGTGGTGTGGAAGTCATCCGTTACCTTGGGAATTGGAAAAGCGGTC
AGCCAGAAGAACGGGATGCAGTGTGTTTACACTGTTGGAAGATATTCACC
TGGTGGAAATATGCAAGGGAAATTCGATACCGAAGTTGTAGAAGATCATA
AGAAGATGAATTATCATCCACCAACACGAAGTTGTCGTTGAAGAAGACGC Run BLAST on NCBI transcript from alignment at sc0000474:120954..123259- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024094 ID=TCONS_00024094|Name=TCONS_00024094|organism=Clytia hemisphaerica|type=transcript|length=2306bp|location=Sequence derived from alignment at sc0000474:120954..123259- (Clytia hemisphaerica)
AAAGTCAAGCCTTATTTGCTCATAACACATTACGTAACCTACACGGTGCA
CCTGCGATGACGCTCGATTCTCAGCTGTCACAACAAGCGGCCGCTTATGC
GCAGGAGATTGCCAACCTTGGGAAGCTTCAACACGCAACTAATTTGAATG
GCATGGGAGAGAACCTTGCAATGTTTTGTGGGTCGTCAGTTTCTGATTAC
AAAGGAGATATTCCTGTTACTAATTGGTGAGTTTTAATTTTCTTATTGCA
GTTGAATGGACTGTCAGATGGTGTCTGATCCGGAGGTAGTAGCGAGATTA
TGTATCTGGAATTCTCTACGGTTACGGCTAAAGTGGCGAGGGAAATGGCG
AGTAAGGCAAGTAATGGCGGGTGAAAGCAAGTTCGATATTTGACGTACGG
CATTATGTCGACTTTGCTTATACGGTGTTTTGGTGTTTTCCCCGTACAGA
GCAAAGTAGACAACGACATGTCGCCTTTGTTGACAACCCGTACAGGCAGC
CCCGCAACCGTAGCCGTAGAATATCTCCGATACATGTTTGTTAGAATGTC
TGGTGTGTGTGACTGGACCTCTAGCGAAACTAGCCACTATCCTCTGAAAC
TTCACGAATATGGTCTCAATTAGTTTGTGTACAACCTATTTTTCTGTTAT
TCCTTTCGATTTCTGTTTGAAAAGTCAACGATTAACCAGACAATTAAGCA
TGATTACTAATGTGAATCTTTTCCCTCGTGAAATTCCGCCTAAAGAATGT
TTGAATTTCCCTGTGAAATTCAGTTATTCTTTGTGACTTTCTGAGCAGGA
AGAATCTATTGGGTGGTAAACGTTCTCAAATCTGAAAGATCCCACCTCTT
CCCACCCTAGGTACGCAGAAGTGTGTAAACCAGGGTACACGTTCAGCCCA
CCCACTGGCTTCAGTAGCGGTACCGGCCACTTCACACAGGTGGTGTGGAA
GTCATCCGTTACCTTGGGAATTGGAAAAGCGGTCAGCCAGAAGAACGGGA
TGCAGTGTGTTTACACTGTTGGAAGATATTCACCTGGTGGAAATATGCAA
GGGAAATTCGATACCGAAGTTGTAGAAGGTATTTAATTCTTTTATTGTTT
TCTATTTGTTTTGGAATACGATTTTTCCAAATCTTAATCATCCCCNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGATAACGAAAA
TCATATTTTTACATGTTGAAGTTTACAAATGAATCCAAACTAAAAGCACT
TTTTTATTATATTCTTTCTTCAAAGAAACCGGCTCAAAGAAATAGAAGCA
CTTCTTCGACCAGCGGTAAGTGTATGCTATTTTATATCTTAAGCAGATTA
TATCATTTCATATACCTAGTTTTTTTACAATTCTTCTGAGTATTATAAAA
ATGCCGTAAAATAAGTTTCCTTCAGATTGACCTAAACACTGAAACCCAAC
CAACAGTCATCCCATCCTTTGAACGTTCCTCTCCCCACTCCTTTGATCAT
TACCGCGTTTATGTATCGGAGGATATCGAGGGCGACGGTAAGTGAAATCG
ATACAAAACAAAGTCGATAGTTGATGTACGGCTCTATATCGCCTTTGCTC
ACCTAAAGTTTTTACCGTCGTCGAGCAAAGTGGACGGCGATTTCGACCTC
ATGCCAACTTTGCTTTATACCGTCCCCCCTCGATTTATCTCGATTACATA
AACTCGCTAGTGATATCGCCAGGGCTATATAAAAGAAACAATATATATAG
AATAAATAAGTGATGCATATTCAACGAGGCGAAGCTTCGGGTTAACAAAT
CTCAATAACCAACTTTTACCTATTGAATATCTTCTTATTAAAAAAATAGA
TTTAAGGGAGTTTTTGTAGCGGTTTTATGCATAAAAGCAACCAAAGAACA
AAAGGTTGCTTGGTTCAAAAATGGAGTTAGGCTTTCATCATCATCGTGCA
GAATATTTCGTGGGCCGCAGTCGGTTAGTTATGTAATGGTGACTCGGCTA
AGAGAGTGTAACCCTCTAATTACAAATGTTTGATTTTATTTCTTCTGCAA
ATAAAAAATGACCTCATTCTTTTCGTTTTTGAAATCATTCCAATTCATAT
TGTAGAAATCATATTTCGACGAATGCTTTTGTTGGTTTTTACGGCTGACG
AGGAAGAGTTCGGAATTCTTTTCATTGAAATCCGTGATTTGTATTAAAAG
ATCATAAGAAGATGAATTATCATCCACCAACACGAAGTTGTCGTTGAAGA
AGACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024094-exon-sc0000474-1575043694:123034..123259 | TCONS_00024094-exon-sc0000474-1575043694:123034..123259 | Clytia hemisphaerica | exon |
| TCONS_00024094-exon-sc0000474-1575043694:122182..122399 | TCONS_00024094-exon-sc0000474-1575043694:122182..122399 | Clytia hemisphaerica | exon |
| TCONS_00024094-exon-sc0000474-1575043694:120954..121009 | TCONS_00024094-exon-sc0000474-1575043694:120954..121009 | Clytia hemisphaerica | exon |
| TCONS_00024094-exon-sc0000474-1510915933:123034..123259 | TCONS_00024094-exon-sc0000474-1510915933:123034..123259 | Clytia hemisphaerica | exon |
| TCONS_00024094-exon-sc0000474-1510915933:122182..122399 | TCONS_00024094-exon-sc0000474-1510915933:122182..122399 | Clytia hemisphaerica | exon |
| TCONS_00024094-exon-sc0000474-1510915933:120954..121009 | TCONS_00024094-exon-sc0000474-1510915933:120954..121009 | Clytia hemisphaerica | exon |
| TCONS_00024094-exon-sc0000474-1491911889:123034..123259 | TCONS_00024094-exon-sc0000474-1491911889:123034..123259 | Clytia hemisphaerica | exon |
| TCONS_00024094-exon-sc0000474-1491911889:122182..122399 | TCONS_00024094-exon-sc0000474-1491911889:122182..122399 | Clytia hemisphaerica | exon |
| TCONS_00024094-exon-sc0000474-1491911889:120954..121009 | TCONS_00024094-exon-sc0000474-1491911889:120954..121009 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000474 | supercontig | sc0000474:120954..123259 - |
Blast
BLAST of TCONS_00024094 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3) HSP 1 Score: 74.3294 bits (181), Expect = 8.306e-17 Identity = 56/154 (36.36%), Postives = 85/154 (55.19%), Query Frame = 3
Query: 3 SQALFAHNTLRNLHGAPAMTLDXXXXXXXXXXXXEIANLGKLQHA--TNLNGMGENLAMFCGSSVSDYKGDIPVTNWYAEVCKPGYTFSPPTGFSSGTGHFTQVVWKSSVTLGIGKAVSQKNGMQCVYTVGRYSPGGNM--QGKFDTEVVEDHK 452
++ L AHN R HG P + L L+++A Y++ +A+ L+H+ ++ GENLA + D G WY+E+ Y F P GF+SGTGHFT +VWK++ +G+GKA S +G + V RY P GN+ +G F+ V+ K
Sbjct: 11 NEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAW----ASYDQTGKEVADRWYSEI--KNYNFQQP-GFTSGTGHFTAMVWKNTKKMGVGKA-SASDG--SSFVVARYFPAGNVVNEGFFEENVLPPKK 154
The following BLAST results are available for this feature:
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