Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024167 ID=TCONS_00024167|Name=TCONS_00024167|organism=Clytia hemisphaerica|type=transcript|length=2211bpRun BLAST on NCBI transcript from alignment at sc0000478:58145..66162+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024167 ID=TCONS_00024167|Name=TCONS_00024167|organism=Clytia hemisphaerica|type=transcript|length=8018bp|location=Sequence derived from alignment at sc0000478:58145..66162+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00024167 vs. Swiss-Prot (Human)
Match: CSN4 (COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1 SV=1) HSP 1 Score: 503.827 bits (1296), Expect = 6.056e-172 Identity = 241/396 (60.86%), Postives = 307/396 (77.53%), Query Frame = 1 Query: 55 MAENIRTSLTNLANQGRSQKDSIDKYRAHLNEILSLQNPELTDLLKSFLTTALQENVSVVVSRQLVSDVATALKSLDATTIKDVSYFTLNNLQTRAISFEEQVVNIRQHLANVLQEEGDWRKSAEALVGIPLETGQKQYSNAFKMEIYLNIAQLYLEDDDPVQADIYINRASLLQKSDDTTDALTIKYKVCYARVLDYRRKFLEAAQRYNELSYNTLIADSERINALKHSLICTILASAGRQRSRMLATLFKDERCQQLPAHEILEKMYLDRIIRGPQLKEFSDMLLDHQKATTADGSTILDRAVVEHNLLAISKIYKNISIDQLGILLEISQQKAEKIVSSMICNNTIKGFIDQVEGFVYFEAQEVLESFDQQIQSVCLHVNDVMDRIQEHVPDW 1242 MA +R L L N S KD KYR L + + L E + LK+F+ + ENVS+V+SRQL++D T L +L +T K++ +FTL +Q R ISFEEQV +IRQHLA++ ++E DWR +A+ LVGIPLETGQKQY+ +K+E YL IA+LYLEDDDPVQA+ YINRASLLQ ++ T + L I YKVCYARVLDYRRKF+EAAQRYNELSY T++ +SER+ ALKH+L CTILASAG+QRSRMLATLFKDERCQQL A+ ILEKMYLDRIIRG QL+EF+ ML+ HQKATTADGS+ILDRAV+EHNLL+ SK+Y NI+ ++LG LLEI KAEKI S MI + GFIDQ++G V+FE +E L ++D+QIQS+C VN+++++I + P+W Sbjct: 1 MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQ-NESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREALPTWDKQIQSLCFQVNNLLEKISQTAPEW 395 The following BLAST results are available for this feature:
BLAST of TCONS_00024167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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