TCONS_00024178 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00024178
Unique Name	TCONS_00024178
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2088

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000478:119208..125062+
coding sequence from alignment at sc0000478:119208..125062+

transcript sequence

>TCONS_00024178 ID=TCONS_00024178|Name=TCONS_00024178|organism=Clytia hemisphaerica|type=transcript|length=2088bp
GTATTGATTTAAACGGACCAATAATTCATATAATTATCAACATTAATTAT
TGACAACTATTGCTATGGTAACAACTCGCGTCTgttagatgaaaaaataa
tatgtttTTGCTGAAGTTTACTTTGTATCATAGTTTCAATGGAATGTTGG
AAAATCTGCAAACATTTAGATGAAAAACGCAGCTTTATTTGAATCGTTCA
TCAAACATCAaccacaaaaaagtcataactcaacaaaaagaaagtttgaa
ttAGAAATGGTACCGAGTAAACATTCGTAGAGtgtagagaaaaaaattat
gcgttgtcaaataaatacttaaTGGTTATTTTAAAATGTCGGTTGCAAGC
TATGATAGGACACATCCATCGAATTATTTGTCTAAAACTTTCGAGTCGAA
TGTTTTGTTCAGTCCCGGTCAGACGGGCAGGCGAACAATCTCAAACgaaa
aTTATGTGCGGCAAGTAGCCAAGGACTTCTACCAACCACCGACACCATGG
GGCCGCAAGAACAGTTACGGGGCACGCAATTTTATCCATTTAAAAGGAAC
ACCAAACGGTAATGACATGGTGATTGTTGCTAAGGGTTCCAAACATTTTG
GATCTGGTATAACGTCAAAGCCAAGagGCGTTGTTATCCAAGAGCAATAC
CAGATCACACCTTACATCAAAAATAAGCTACGCCCTGATGACGAACTAAT
ACCAGCTAGCACAAAGGTAGATTTAACATCACACCAAGTGGATCACAAAT
ATCCAATAGATCACCCATACACTTCACATATTCCCAAGAACGACCTCCTG
CCATCTTCAACACCCGACGAAGATGCGGTGTCACTCCAAGATGAGAATTA
CATCCATCCTGCTGATAGTCCTGCATCTGCACCACAGCCTTACATCCATT
CCAAAACCAGAGGAGCTCCCTACCGCCATGAATTGATCGATATACCGTTA
GATTCCAAGCGCAAACCTACGACTTGGCCACAAGCTCAGAATTTACAGAG
CATCAGAGGACCTGGTTGTCAACGAAATGTATATTATCCTACACCAAGAA
CACAGTTAGATTCCAGTCTCACTCAACCACAACCTGAACGACCGGTTTCC
AAGGAGACGTTGAAAACATTGAAAGACGTTAATAAATCCATGATGCAGTC
CAtttatcaaaaagattttgtcgGTGAACGAAACGAAAAACCAAAGACTT
TGGAGAATGATGAGATTCTAAATACTTTCAAAGACATGGAAATACAGAGC
TATTCGGGTGTTCCGTCACACGTTGCTGATGCTATTGCCTCAAACAAAAA
CGAAAATACCCTGATGGGATCGAGTGACGAGCCTCGTTTTAAAAGACCCA
TGTATAAAGGTGTTCGGCCTTACACAACTGTGGgcattttcaaagaaact
tcCCCATCAGCTGTGAGCCAATCAGAACTCGCGAAATCAAAGCCAAACCA
ATCAGAACGCGCTAAAACAGCTCACTTAGCAACCAACCAATATCATAAAA
GTGAAGATGAACCTTTGGTACCCTTTGAGCGAACGGAATATCAAAGAACT
TATAATTCCAAATATCCAGAGAGAGAAGTGCCTGATTTGAGAGCTACTTG
GGATGTTCGAAAACCGCTGCTAGAGAAAAGACATTTTGTACCGATCGGTG
AGCGAAAACTTTATATACAAAGGTGATAAAAAAGACAGGAAATCAACAGA
TTTTGTACCGATCGGCcagcaaaaaaattacatataaaGTCAATGGACGA
AGAATCGACAGAGTGGTAATTGTGTAAATATTAAAATGGGAAAAATGCTT
TTTATTGTTCGAAAGTCACTTTAAAGTAAATTACCAGATGTTGTTTCTTA
AGTTTGTAAAATCATTGAAAAGAAACagttttatgttttgtttcttgAAT
CACACTGCAAATTTTGGCTAagtttaccttaagggaacttattttggcgg
gaagtaATTTTGACAAGCtgcaaaaatcctgaaaatttttaatttgccaa
aattagttcccaccaaaataagttcccttaaggcaGTAGACAACAAATCC
GAATTATAAGAACAGTGAggctcaaaatgtcaaaattt

Run BLAST on NCBI

protein sequence of TCONS_00024178-protein

>TCONS_00024178-protein ID=TCONS_00024178-protein|Name=TCONS_00024178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
MSVASYDRTHPSNYLSKTFESNVLFSPGQTGRRTISNENYVRQVAKDFYQ
PPTPWGRKNSYGARNFIHLKGTPNGNDMVIVAKGSKHFGSGITSKPRGVV
IQEQYQITPYIKNKLRPDDELIPASTKVDLTSHQVDHKYPIDHPYTSHIP
KNDLLPSSTPDEDAVSLQDENYIHPADSPASAPQPYIHSKTRGAPYRHEL
IDIPLDSKRKPTTWPQAQNLQSIRGPGCQRNVYYPTPRTQLDSSLTQPQP
ERPVSKETLKTLKDVNKSMMQSIYQKDFVGERNEKPKTLENDEILNTFKD
MEIQSYSGVPSHVADAIASNKNENTLMGSSDEPRFKRPMYKGVRPYTTVG
IFKETSPSAVSQSELAKSKPNQSERAKTAHLATNQYHKSEDEPLVPFERT
EYQRTYNSKYPEREVPDLRATWDVRKPLLEKRHFVPIGERKLYIQR

Run BLAST on NCBI

transcript from alignment at sc0000478:119208..125062+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00024178 ID=TCONS_00024178|Name=TCONS_00024178|organism=Clytia hemisphaerica|type=transcript|length=5855bp|location=Sequence derived from alignment at sc0000478:119208..125062+ (Clytia hemisphaerica)
GTATTGATTTAAACGGACCAATAATTCATATAATTATCAACATTAATTAT
TGACAACTATTGCTATGGTAACAACTCGCGTCTgttagatgaaaaaataa
tatgtttTTGCTGAAGTTTACTTTGTATCATAGTTTCAATGGAATGTTGG
AAAATCTGCAAACATTTAGATGAAAAACGCAGCTTTATTTGAATCGTTCA
TCAAACATCAaccacaaaaaagtcataactcaacaaaaagaaagtttgaa
ttAGAAATGGTACCGAGTAAACATTCGTAGAGtgtagagaaaaaaattat
gcgttgtcaaataaatacttaaTGGTTATTTTAAAATGTCGGTTGCAAGC
TATGATAGGACACATCCATCGAATTATTTGTCTAAAACTTTCGAGTCGAA
TGTTTTGTTCAGTCCCGGTCAGACGGGCAGGCGAACAATCTCAAACgaaa
agtaagtttttttctCTCTATATGTTCCAGTTTCACTTTATTATATCGTC
TTCAGCCATAATAAtaaagtctctttaactcgaaccaccaaatttttcga
gttatagaTACTTAAGGTGGATACATAACTTTCTGATTCGTAAGTTGtcc
aaataaaagaaaacgtTTGACCTTTAGAGGGGTCGTTTGACGGGTTTGAC
GGCATTAGTCCTTTTTTCGTCGGTGtttcaagataaaaagtgacggtatt
tcggtgtcaaaaGTGCCATGTGGTGacaaaataagaatttgaaaatACTT
GTTGTCGGTGTTGACGGTGATCTAAGAAAAATACGTCGGCATTTAGGTGT
TTTCGACCCCCGTATACGACTAAACTTCTGTGTATGATTGTATGagggtt
gaaaaattttctagGGTAGAAAGAAGGAAAGGTATGAAGTGGTTTAAAGT
GTTGTTCTCAGTCAAGGAAATTCAACATTGCTTAGTctttaaataaattt
caaatactttttgaaatagagcacttttaggtaaaaataaatagaaaatg
acCCCTACAATCAAACACAAAGAAAGAAATTGATCCCACTTGGTTCTTTC
TaacacacgttttttataagaacattcaattTTCGGagcctttgaatgtt
cttacctttttgagttcCAAGCCTTAAGAAtattactttataagaatatt
catgatgaaataagccaaaattaagaatatgcgcTAAGAATACCTGCATC
ATGGAGTTTGGCAACTGagcctaagaatgccatttttagagcattttacc
atgaaattgccaattattcccCAGTAAGCTAAAAGGTTTCACAAGAATGC
CACATTTTTGCTTCAGGTATGTATAACATGCTAGATTTTGGCTGGGTTTG
GGtccaaacctaagaataccgttaAAAATATTCATCATGAATCGgaaaaa
cactattcttataaaaaaagcgtgtaatgttTTTTTCCGTTTTGTAGGAT
AGAAGTCCCCGATACCTTAAATGttattttgttcttaatattttggccat
cgaagtgtTGTCTTCTAACATATTATAGTTTGATCTTGAAAAAAGTGTAA
TACAAATCTCTCTTTACCTTACATCAGTTATGTGCGGCAAGTAGCCAAGG
ACTTCTACCAACCACCGACACCATGGGGCCGCAAGAACAGTTACGGGGCA
CGCAATTTTATCCATTTAAAAGGAACACCAAACGGTAATGACATGGTGAT
TGTTGCTAAGGGTTCCAAACATTTTGGATCTGGTATAACGTCAAAGCCAA
GGTTTGTCAACTCCATTATTTCTTCCTGTTATCTAGGTAGATATAATATA
TACGTTTTTAATCGATTGTATGACACTATGGGTGATCTTATAGAACAGCT
GAGAGTTAGAAATATTGTAGATGGCCCCGTTTCTGGTGACTATGATCTAG
CTGTACGAAATAGAATACACGAAGATATTATCTTTAATCCTTGTAAGGCC
TTACGGAGCCTTATGGTAATCAGCGCTTATAGTCACCTGGAAATcaccta
gtctgaatcgcagacctctacaaaaccccaggtagtctATGAGGAGCACA
AATCCGTGGGATGGCACTCAAGGTAAGTGACCTATCGTAGGTGAGGAACT
TAAGTGTACGCTTTTCAGTCCACGCATAGTCCACGGTAGTTTTCTGATCG
AATGACCCCGAAGAAAATCAGCATTACCATAACAACCTGTGACTTCACTT
TTTAATGCgaaaacttttacttttatttttcagagGCGTTGTTATCCAAG
AGCAATACCAGATCACACCTTACATCAAAAATAAGCTACGCCCTGATGAC
GAACTGTAAGGAGACATTTAATTTTAATACTTTTGGGTCGATATGCTAAA
CAGGAGCACCAGtacagtggcgttgtgggaaaatttttctggaggggcca
aagtcaatttttttaaaatggcgcccccaattttccaaagtggcgcCCCC
ACCCATCAGTTGCTGAACTCTTACCATTTACTAATTCGTTTGCCTAGGCA
TAACGAGGAaagaaatatttagtggataaaagtagatatatctttgataa
aTGGAAAGGGGAAAAACAGgtcccaccatggttggggccgactagaaaat
ttttgaaaatcgactgccaagataccctgaatcactaaataaaaatagac
aaatttcatattggctagagtgaaaagaaacttaaagaaacaatgtgcaa
atgcgagcgaagcgagcgaaaaaatttatgtttcgcgatttcaatattgt
tgtcagcaaattgatattggggcgcagttagatttttattcaataatgct
attgtacacaaaaaaacttttaagttAGCTATATTACAAAGAACTTACCa
attaactttattgcgagcgaagcgagcgagaaaaaaaattgcaagtaatC
TCAGTgaaattggtcctgggcgcaatttcAGGAgtataaagtatgatttt
taagattggggcgtttaaaaaatcttttggcgccccttgctcttcggcgc
cccttcagcaaagctccgctggggggccatggccccccggccccccctgc
cacaacgccactgaagCACCTTATTCGATTCCTTATTATTCTATTAACTA
AAATATTATCCATGTTATTCCCTGGCAGgaccgaaaaaaattttaaagta
tGAGTACTTATCAGTAATGTACTTTTCGACCGATAAGATTTCATTATTTt
gagggttagggttagggttagggttagggttagggttagggttatcAAAC
ATATAAAAATAAACACAGATACGTAAAATAGATAATAGAtaatttaaaac
tattttaagtttaaaactcaTAAACATAGTTTTCCTACTTATCTCACCAT
AGAATACCAGCTAGCACAAAGGTAGATTTAACATCACACCAAGTGGATCA
CAAATATCCAATAGATCACCCATACACTTCACATATTCCCAAGAACGACC
TCCTGCCATCTTCAACACCCGACGAAGATGCGGTGTCACTCCAAGATGAG
AATTACATCCATCCTGCTGATAGTCCTGCATCTGCACCACAGCCTTACAT
CCATTCCAAAACCAGAGGAGCTCCCTACCGCCATGAATTGATCGATATAC
CGTTAGATTCCAAGCGCAAACCTACGACTTGGCCACAAGCTCAGAATTTA
CAGGTCAGAATCTAATTGATTCGATTTCTTCTTTTCCTGCATATATAGAA
TAACGTATTTCTAACTTGAATAAACAGGGATACGTGAATTGAAAATTGGC
GAAAATGTCGATtgagaaaatgttatattttttagtCTAAAGCTAGACTA
CTAATTAAcatcagttttactcaaaagctTCTTTTACAGTAGTAGAAAAA
AACCTACCAAACATTTGTTTACTTTTCGAGTGTTTGAATTTGTATTCCAA
CTTTTCGTACggctttttttcttatttttaactTTGAGGCAGGATTGCTC
CTACGTTTTGTGTTAAAAGAATACTGATCTGGAAATCGAGACTATTCTTT
TACATgcatatatttttcaacttctaGAGCATCAGAGGACCTGGTTGTCA
ACGAAATGTATATTATCCTACACCAAGAACACAGTTAGATTCCAGTCTCA
CTCAACCACAACCTGAACGACCGGTTTCCAAGGAGACGTTGAAAACATTG
AAAGACGTTAATAAATCCATGATGCAGTCCAtttatcaaaaagattttgt
cgGTGAACGAAACGAAAAACCAAAGACTTTGGAGAATGATGAGATTCTAA
ATACTTTCAAAGACATGGAAATACAGGTATAaagtaccgtattacttcga
ataaacaacgtcttcttttaaacgccccctcaaataaactcCCCCTTCAA
ATAAACGCCTCCCTTTTAGGAGGAGGGTTTATTGAAATAATAGCTACATT
ATTTTCTCTCCTACATTCCTAAATTGACAAATTTCTACTCAGACAATAAT
AACAAGGCAAAATAAGGTTCTAATACTTTCTAATAGTTCTaatttctttt
aaacgcccccactcgaataaacgcccctcctaaatatcaaaaaattaata
aacgccTCTGCAgtattttctctcaaaatcttACTTCTATCTACTATAAA
ATTCGAACGAGAACATAAGTCACATTCCAGCTCGTTGATTAGCTTCGCTA
ATAATTCCAGAGCACTTAATTTTAGGATTTTCACATTATcgataaaaaaa
tattctacTGGTCGAATTACTGCTGAAATTATTCTTTTTCCTTATTTATA
AAGAGCCACCCCTGTTTCTCTGCCCCAACAGAAACCTTTTACTCAGCACG
GATAAAAAATCTATTGCTTCAGCTCAACCAGTGGGGGTGATTCAAAAGGA
TGATTCCTATATTCCATTTCCCAATGGGGAAGAGATTCTataatattttt
tcccaccgggtaTGATATTGGAGCCAAATTTTTCAAGTGAGGTTGGGGCT
ACACACGGGTCTAAGTTGTCATATAAAGGCTAAGAAAtgaatttttcctt
cttttaatTTGCAGAGCTATTCGGGTGTTCCGTCACACGTTGCTGATGCT
ATTGCCTCAAACAAAAACGAAAATACCCTGATGGGATCGAGTGACGAGCC
TCGTTTTAAAAGACCCATGTATAAAGGTGTTCGGCCTTACACAACTGTGG
gcattttcaaagaaacttcCCCATCAGCTGTGAGCCAATCAGAACTCGCG
AAATCAAAGCCAAACCAATCAGAACGCGCTAAAACAGCTCACTTAGCAAC
CAACCAATATCATAAAAGTGAAGATGAACCTTTGGTACCCTTTGAGCGAA
CGGAATATCAAAGAACTTATAATTCCAAATATCCAGAGAGAGAAGTGCCT
GATTTGAGAGCTACTTGGGATGTTCGAAAACCGCTGCTAGAGAAAAGACA
TTTTGTACCGATCGGTGAGCGAAAACTTTATATACAAAGGTGATAAAAAA
GACAGGAAATCAACAGATTTTGTACCGATCGGCcagcaaaaaaattacat
ataaaGTCAATGGACGAAGAATCGACAGAGTGGTAATTGTGTAAATATTA
AAATGGGAAAAATGCTTTTTATTGTTCGAAAGTCACTTTAAAGTAAATTA
CCAGATGTTGTTTCTTAAGTTTGTAAAATCATTGAAAAGAAACagtttta
tgttttgtttcttgAATCACACTGCAAATTTTGGCTAagtttaccttaag
ggaacttattttggcgggaagtaATTTTGACAAGCtgcaaaaatcctgaa
aatttttaatttgccaaaattagttcccaccaaaataagttcccttaagg
caGTAGACAACAAATCCGAATTATAAGAACAGTGAggctcaaaatgtcaa
aattt

Coding sequence (CDS) from alignment at sc0000478:119208..125062+

>TCONS_00024178 ID=TCONS_00024178|Name=TCONS_00024178|organism=Clytia hemisphaerica|type=CDS|length=8046bp|location=Sequence derived from alignment at sc0000478:119208..125062+ (Clytia hemisphaerica)
ATGTCGGTTGCAAGCTATGATAGGACACATCCATCGAATTATTTGTCTAA
AACTTTCGAGTCGAATGTTTTGTTCAGTCCCGGTCAGACGGGCAGGCGAA
CAATCTCAAACgaaaaTTATGTGCGGCAAGTAGCCAAGGACTTCTACCAA
CCACCGACACCATGGGGCCGCAAGAACAGTTACGGGGCACGCAATTTTAT
CCATTTAAAAGGAACACCAAACGGTAATGACATGGTGATTGTTGCTAAGG
GTTCCAAACATTTTGGATCTGGTATAACGTCAAAGCCAAGagGCGTTGTT
ATCCAAGAGCAATACCAGATCACACCTTACATCAAAAATAAGCTACGCCC
TGATGACGAACTAATACCAGCTAGCACAAAGGTAGATTTAACATCACACC
AAGTGGATCACAAATATCCAATAGATCACCCATACACTTCACATATTCCC
AAGAACGACCTCCTGCCATCTTCAACACCCGACGAAGATGCGGTGTCACT
CCAAGATGAGAATTACATCCATCCTGCTGATAGTCCTGCATCTGCACCAC
AGCCTTACATCCATTCCAAAACCAGAGGAGCTCCCTACCGCCATGAATTG
ATCGATATACCGTTAGATTCCAAGCGCAAACCTACGACTTGGCCACAAGC
TCAGAATTTACAGAGCATCAGAGGACCTGGTTGTCAACGAAATGTATATT
ATCCTACACCAAGAACACAGTTAGATTCCAGTCTCACTCAACCACAACCT
GAACGACCGGTTTCCAAGGAGACGTTGAAAACATTGAAAGACGTTAATAA
ATCCATGATGCAGTCCAtttatcaaaaagattttgtcgGTGAACGAAACG
AAAAACCAAAGACTTTGGAGAATGATGAGATTCTAAATACTTTCAAAGAC
ATGGAAATACAGAGCTATTCGGGTGTTCCGTCACACGTTGCTGATGCTAT
TGCCTCAAACAAAAACGAAAATACCCTGATGGGATCGAGTGACGAGCCTC
GTTTTAAAAGACCCATGTATAAAGGTGTTCGGCCTTACACAACTGTGGgc
attttcaaagaaacttcCCCATCAGCTGTGAGCCAATCAGAACTCGCGAA
ATCAAAGCCAAACCAATCAGAACGCGCTAAAACAGCTCACTTAGCAACCA
ACCAATATCATAAAAGTGAAGATGAACCTTTGGTACCCTTTGAGCGAACG
GAATATCAAAGAACTTATAATTCCAAATATCCAGAGAGAGAAGTGCCTGA
TTTGAGAGCTACTTGGGATGTTCGAAAACCGCTGCTAGAGAAAAGACATT
TTGTACCGATCGGTGAGCGAAAACTTTATATACAAAGGTGAATGTCGGTT
GCAAGCTATGATAGGACACATCCATCGAATTATTTGTCTAAAACTTTCGA
GTCGAATGTTTTGTTCAGTCCCGGTCAGACGGGCAGGCGAACAATCTCAA
ACgaaaaTTATGTGCGGCAAGTAGCCAAGGACTTCTACCAACCACCGACA
CCATGGGGCCGCAAGAACAGTTACGGGGCACGCAATTTTATCCATTTAAA
AGGAACACCAAACGGTAATGACATGGTGATTGTTGCTAAGGGTTCCAAAC
ATTTTGGATCTGGTATAACGTCAAAGCCAAGagGCGTTGTTATCCAAGAG
CAATACCAGATCACACCTTACATCAAAAATAAGCTACGCCCTGATGACGA
ACTAATACCAGCTAGCACAAAGGTAGATTTAACATCACACCAAGTGGATC
ACAAATATCCAATAGATCACCCATACACTTCACATATTCCCAAGAACGAC
CTCCTGCCATCTTCAACACCCGACGAAGATGCGGTGTCACTCCAAGATGA
GAATTACATCCATCCTGCTGATAGTCCTGCATCTGCACCACAGCCTTACA
TCCATTCCAAAACCAGAGGAGCTCCCTACCGCCATGAATTGATCGATATA
CCGTTAGATTCCAAGCGCAAACCTACGACTTGGCCACAAGCTCAGAATTT
ACAGAGCATCAGAGGACCTGGTTGTCAACGAAATGTATATTATCCTACAC
CAAGAACACAGTTAGATTCCAGTCTCACTCAACCACAACCTGAACGACCG
GTTTCCAAGGAGACGTTGAAAACATTGAAAGACGTTAATAAATCCATGAT
GCAGTCCAtttatcaaaaagattttgtcgGTGAACGAAACGAAAAACCAA
AGACTTTGGAGAATGATGAGATTCTAAATACTTTCAAAGACATGGAAATA
CAGAGCTATTCGGGTGTTCCGTCACACGTTGCTGATGCTATTGCCTCAAA
CAAAAACGAAAATACCCTGATGGGATCGAGTGACGAGCCTCGTTTTAAAA
GACCCATGTATAAAGGTGTTCGGCCTTACACAACTGTGGgcattttcaaa
gaaacttcCCCATCAGCTGTGAGCCAATCAGAACTCGCGAAATCAAAGCC
AAACCAATCAGAACGCGCTAAAACAGCTCACTTAGCAACCAACCAATATC
ATAAAAGTGAAGATGAACCTTTGGTACCCTTTGAGCGAACGGAATATCAA
AGAACTTATAATTCCAAATATCCAGAGAGAGAAGTGCCTGATTTGAGAGC
TACTTGGGATGTTCGAAAACCGCTGCTAGAGAAAAGACATTTTGTACCGA
TCGGTGAGCGAAAACTTTATATACAAAGGTGAATGTCGGTTGCAAGCTAT
GATAGGACACATCCATCGAATTATTTGTCTAAAACTTTCGAGTCGAATGT
TTTGTTCAGTCCCGGTCAGACGGGCAGGCGAACAATCTCAAACgaaaaTT
ATGTGCGGCAAGTAGCCAAGGACTTCTACCAACCACCGACACCATGGGGC
CGCAAGAACAGTTACGGGGCACGCAATTTTATCCATTTAAAAGGAACACC
AAACGGTAATGACATGGTGATTGTTGCTAAGGGTTCCAAACATTTTGGAT
CTGGTATAACGTCAAAGCCAAGagGCGTTGTTATCCAAGAGCAATACCAG
ATCACACCTTACATCAAAAATAAGCTACGCCCTGATGACGAACTAATACC
AGCTAGCACAAAGGTAGATTTAACATCACACCAAGTGGATCACAAATATC
CAATAGATCACCCATACACTTCACATATTCCCAAGAACGACCTCCTGCCA
TCTTCAACACCCGACGAAGATGCGGTGTCACTCCAAGATGAGAATTACAT
CCATCCTGCTGATAGTCCTGCATCTGCACCACAGCCTTACATCCATTCCA
AAACCAGAGGAGCTCCCTACCGCCATGAATTGATCGATATACCGTTAGAT
TCCAAGCGCAAACCTACGACTTGGCCACAAGCTCAGAATTTACAGAGCAT
CAGAGGACCTGGTTGTCAACGAAATGTATATTATCCTACACCAAGAACAC
AGTTAGATTCCAGTCTCACTCAACCACAACCTGAACGACCGGTTTCCAAG
GAGACGTTGAAAACATTGAAAGACGTTAATAAATCCATGATGCAGTCCAt
ttatcaaaaagattttgtcgGTGAACGAAACGAAAAACCAAAGACTTTGG
AGAATGATGAGATTCTAAATACTTTCAAAGACATGGAAATACAGAGCTAT
TCGGGTGTTCCGTCACACGTTGCTGATGCTATTGCCTCAAACAAAAACGA
AAATACCCTGATGGGATCGAGTGACGAGCCTCGTTTTAAAAGACCCATGT
ATAAAGGTGTTCGGCCTTACACAACTGTGGgcattttcaaagaaacttcC
CCATCAGCTGTGAGCCAATCAGAACTCGCGAAATCAAAGCCAAACCAATC
AGAACGCGCTAAAACAGCTCACTTAGCAACCAACCAATATCATAAAAGTG
AAGATGAACCTTTGGTACCCTTTGAGCGAACGGAATATCAAAGAACTTAT
AATTCCAAATATCCAGAGAGAGAAGTGCCTGATTTGAGAGCTACTTGGGA
TGTTCGAAAACCGCTGCTAGAGAAAAGACATTTTGTACCGATCGGTGAGC
GAAAACTTTATATACAAAGGTGAATGTCGGTTGCAAGCTATGATAGGACA
CATCCATCGAATTATTTGTCTAAAACTTTCGAGTCGAATGTTTTGTTCAG
TCCCGGTCAGACGGGCAGGCGAACAATCTCAAACgaaaaTTATGTGCGGC
AAGTAGCCAAGGACTTCTACCAACCACCGACACCATGGGGCCGCAAGAAC
AGTTACGGGGCACGCAATTTTATCCATTTAAAAGGAACACCAAACGGTAA
TGACATGGTGATTGTTGCTAAGGGTTCCAAACATTTTGGATCTGGTATAA
CGTCAAAGCCAAGagGCGTTGTTATCCAAGAGCAATACCAGATCACACCT
TACATCAAAAATAAGCTACGCCCTGATGACGAACTAATACCAGCTAGCAC
AAAGGTAGATTTAACATCACACCAAGTGGATCACAAATATCCAATAGATC
ACCCATACACTTCACATATTCCCAAGAACGACCTCCTGCCATCTTCAACA
CCCGACGAAGATGCGGTGTCACTCCAAGATGAGAATTACATCCATCCTGC
TGATAGTCCTGCATCTGCACCACAGCCTTACATCCATTCCAAAACCAGAG
GAGCTCCCTACCGCCATGAATTGATCGATATACCGTTAGATTCCAAGCGC
AAACCTACGACTTGGCCACAAGCTCAGAATTTACAGAGCATCAGAGGACC
TGGTTGTCAACGAAATGTATATTATCCTACACCAAGAACACAGTTAGATT
CCAGTCTCACTCAACCACAACCTGAACGACCGGTTTCCAAGGAGACGTTG
AAAACATTGAAAGACGTTAATAAATCCATGATGCAGTCCAtttatcaaaa
agattttgtcgGTGAACGAAACGAAAAACCAAAGACTTTGGAGAATGATG
AGATTCTAAATACTTTCAAAGACATGGAAATACAGAGCTATTCGGGTGTT
CCGTCACACGTTGCTGATGCTATTGCCTCAAACAAAAACGAAAATACCCT
GATGGGATCGAGTGACGAGCCTCGTTTTAAAAGACCCATGTATAAAGGTG
TTCGGCCTTACACAACTGTGGgcattttcaaagaaacttcCCCATCAGCT
GTGAGCCAATCAGAACTCGCGAAATCAAAGCCAAACCAATCAGAACGCGC
TAAAACAGCTCACTTAGCAACCAACCAATATCATAAAAGTGAAGATGAAC
CTTTGGTACCCTTTGAGCGAACGGAATATCAAAGAACTTATAATTCCAAA
TATCCAGAGAGAGAAGTGCCTGATTTGAGAGCTACTTGGGATGTTCGAAA
ACCGCTGCTAGAGAAAAGACATTTTGTACCGATCGGTGAGCGAAAACTTT
ATATACAAAGGTGAATGTCGGTTGCAAGCTATGATAGGACACATCCATCG
AATTATTTGTCTAAAACTTTCGAGTCGAATGTTTTGTTCAGTCCCGGTCA
GACGGGCAGGCGAACAATCTCAAACgaaaaTTATGTGCGGCAAGTAGCCA
AGGACTTCTACCAACCACCGACACCATGGGGCCGCAAGAACAGTTACGGG
GCACGCAATTTTATCCATTTAAAAGGAACACCAAACGGTAATGACATGGT
GATTGTTGCTAAGGGTTCCAAACATTTTGGATCTGGTATAACGTCAAAGC
CAAGagGCGTTGTTATCCAAGAGCAATACCAGATCACACCTTACATCAAA
AATAAGCTACGCCCTGATGACGAACTAATACCAGCTAGCACAAAGGTAGA
TTTAACATCACACCAAGTGGATCACAAATATCCAATAGATCACCCATACA
CTTCACATATTCCCAAGAACGACCTCCTGCCATCTTCAACACCCGACGAA
GATGCGGTGTCACTCCAAGATGAGAATTACATCCATCCTGCTGATAGTCC
TGCATCTGCACCACAGCCTTACATCCATTCCAAAACCAGAGGAGCTCCCT
ACCGCCATGAATTGATCGATATACCGTTAGATTCCAAGCGCAAACCTACG
ACTTGGCCACAAGCTCAGAATTTACAGAGCATCAGAGGACCTGGTTGTCA
ACGAAATGTATATTATCCTACACCAAGAACACAGTTAGATTCCAGTCTCA
CTCAACCACAACCTGAACGACCGGTTTCCAAGGAGACGTTGAAAACATTG
AAAGACGTTAATAAATCCATGATGCAGTCCAtttatcaaaaagattttgt
cgGTGAACGAAACGAAAAACCAAAGACTTTGGAGAATGATGAGATTCTAA
ATACTTTCAAAGACATGGAAATACAGAGCTATTCGGGTGTTCCGTCACAC
GTTGCTGATGCTATTGCCTCAAACAAAAACGAAAATACCCTGATGGGATC
GAGTGACGAGCCTCGTTTTAAAAGACCCATGTATAAAGGTGTTCGGCCTT
ACACAACTGTGGgcattttcaaagaaacttcCCCATCAGCTGTGAGCCAA
TCAGAACTCGCGAAATCAAAGCCAAACCAATCAGAACGCGCTAAAACAGC
TCACTTAGCAACCAACCAATATCATAAAAGTGAAGATGAACCTTTGGTAC
CCTTTGAGCGAACGGAATATCAAAGAACTTATAATTCCAAATATCCAGAG
AGAGAAGTGCCTGATTTGAGAGCTACTTGGGATGTTCGAAAACCGCTGCT
AGAGAAAAGACATTTTGTACCGATCGGTGAGCGAAAACTTTATATACAAA
GGTGAATGTCGGTTGCAAGCTATGATAGGACACATCCATCGAATTATTTG
TCTAAAACTTTCGAGTCGAATGTTTTGTTCAGTCCCGGTCAGACGGGCAG
GCGAACAATCTCAAACgaaaaTTATGTGCGGCAAGTAGCCAAGGACTTCT
ACCAACCACCGACACCATGGGGCCGCAAGAACAGTTACGGGGCACGCAAT
TTTATCCATTTAAAAGGAACACCAAACGGTAATGACATGGTGATTGTTGC
TAAGGGTTCCAAACATTTTGGATCTGGTATAACGTCAAAGCCAAGagGCG
TTGTTATCCAAGAGCAATACCAGATCACACCTTACATCAAAAATAAGCTA
CGCCCTGATGACGAACTAATACCAGCTAGCACAAAGGTAGATTTAACATC
ACACCAAGTGGATCACAAATATCCAATAGATCACCCATACACTTCACATA
TTCCCAAGAACGACCTCCTGCCATCTTCAACACCCGACGAAGATGCGGTG
TCACTCCAAGATGAGAATTACATCCATCCTGCTGATAGTCCTGCATCTGC
ACCACAGCCTTACATCCATTCCAAAACCAGAGGAGCTCCCTACCGCCATG
AATTGATCGATATACCGTTAGATTCCAAGCGCAAACCTACGACTTGGCCA
CAAGCTCAGAATTTACAGAGCATCAGAGGACCTGGTTGTCAACGAAATGT
ATATTATCCTACACCAAGAACACAGTTAGATTCCAGTCTCACTCAACCAC
AACCTGAACGACCGGTTTCCAAGGAGACGTTGAAAACATTGAAAGACGTT
AATAAATCCATGATGCAGTCCAtttatcaaaaagattttgtcgGTGAACG
AAACGAAAAACCAAAGACTTTGGAGAATGATGAGATTCTAAATACTTTCA
AAGACATGGAAATACAGAGCTATTCGGGTGTTCCGTCACACGTTGCTGAT
GCTATTGCCTCAAACAAAAACGAAAATACCCTGATGGGATCGAGTGACGA
GCCTCGTTTTAAAAGACCCATGTATAAAGGTGTTCGGCCTTACACAACTG
TGGgcattttcaaagaaacttcCCCATCAGCTGTGAGCCAATCAGAACTC
GCGAAATCAAAGCCAAACCAATCAGAACGCGCTAAAACAGCTCACTTAGC
AACCAACCAATATCATAAAAGTGAAGATGAACCTTTGGTACCCTTTGAGC
GAACGGAATATCAAAGAACTTATAATTCCAAATATCCAGAGAGAGAAGTG
CCTGATTTGAGAGCTACTTGGGATGTTCGAAAACCGCTGCTAGAGAAAAG
ACATTTTGTACCGATCGGTGAGCGAAAACTTTATATACAAAGGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013571	XLOC_013571	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00024178-protein	TCONS_00024178-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000478	supercontig	sc0000478:119208..125062 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8581	12.7228	6.52036	5.81445	137.828	100.563	74.2807	72.0633	38.361	57.3309	28.1964	37.3219	19.514	22.6259	0.857709	1.79488	3.31672	3.61745	53.9512	61.5597	7.50297	7.93377	6.27815	7.26262	14.4336	14.9984	0.284788	0.359194	0.922092	1.53731

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR027886	DUF4555

Blast

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BLAST of TCONS_00024178 vs. Swiss-Prot (Human)
Match: CG031 (Uncharacterized protein C7orf31 OS=Homo sapiens GN=C7orf31 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 6.794e-26
Identity = 88/277 (31.77%), Postives = 135/277 (48.74%), Query Frame = 3

Query:  369 SNYLSKTFESNVLFSPGQTGRRTISNENYVRQVAKDFYQPPTPWGRKNSYGARNFIHL--KGTPNGNDMVIVAKGSKHFGSGITSKPRGVVIQEQYQITPYIKNKLRPDDELIPASTKVDLTSHQVDHKYPIDHPYTSHIPKNDLLPSSTPDEDAVSLQDENYIHPADSPASAPQPYIHS---KTRGAPYRHELIDIPLDSKRKPTTWP-QAQNLQSIRGPGCQRNVYYPTPRTQL--DSSLTQPQPERPVSKETLKTLKDVNKSMMQSIYQKDFVG 1175
            ++ LS TF SN L +P QT  R  ++E+  +++ +   Q   PWG +  YG    I L     P      ++ KG +H+G G  + PR + +++ Y +T   K+ +  +D LIP     + T  ++   YPI+HPY +HI +  + P+ T  ED  +        P   P + P     S   KTRG PYR+ELIDIP+DSK+K  TWP Q       RG    + V+YP P      ++SL    P    S +     +++ +S   + Y  DF G
Sbjct:   17 ADILSNTFYSNELHNPLQTVTRPTASEDRYQELRESLQQCRLPWGAEREYGGIIPISLPEDHRPKYEPPRVMGKGHQHYGFGGETWPRKLPVEQFYYLTQNKKSDVYGNDSLIPKPP--NSTVGEICLPYPIEHPYHTHICRGAMFPTFTSPEDLYTGIKARTQQPF--PPTVPTKAYDSTVLKTRGNPYRYELIDIPMDSKKKALTWPGQGVYYDFPRGVEKNKPVFYPKPPKTFAPNTSLNSWDPI--CSAKEANIQRNLERSHWLTSYTHDFTG 287

The following BLAST results are available for this feature:

BLAST of TCONS_00024178 vs. Swiss-Prot (Human)

BLAST of TCONS_00024178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CG031	6.794e-26	31.77	Uncharacterized protein C7orf31 OS=Homo sapiens GN...	[more]

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TCONS_00024178 (transcript) - C. hemisphaerica