|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024189 ID=TCONS_00024189|Name=TCONS_00024189|organism=Clytia hemisphaerica|type=transcript|length=3706bpRun BLAST on NCBI protein sequence of TCONS_00024189-protein >TCONS_00024189-protein ID=TCONS_00024189-protein|Name=TCONS_00024189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=686bp MSSMKVKKSTVLTKFGIGSSKRPQFNPDPSSPQKWIHAAKDIKEGHVVYQRun BLAST on NCBI transcript from alignment at sc0000478:23630..49411- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024189 ID=TCONS_00024189|Name=TCONS_00024189|organism=Clytia hemisphaerica|type=transcript|length=25782bp|location=Sequence derived from alignment at sc0000478:23630..49411- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000478:23630..49411- >TCONS_00024189 ID=TCONS_00024189|Name=TCONS_00024189|organism=Clytia hemisphaerica|type=CDS|length=22671bp|location=Sequence derived from alignment at sc0000478:23630..49411- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024189 vs. Swiss-Prot (Human)
Match: GULP1 (PTB domain-containing engulfment adapter protein 1 OS=Homo sapiens GN=GULP1 PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.234e-38 Identity = 102/321 (31.78%), Postives = 175/321 (54.52%), Query Frame = 1
Query: 298 WIHAAKDIKEGHVVYQAKYLGTTEVQKAKGTEVVKEAIXXXXXXXXXXXAEAGNKGSKLPRVEINISIDSLKVIDSRTRQMICGRPLHRVSYCADDHSEKKLFAFIAKDQETKQHSCFVFICDKLAADLTMTLGQAFQMAYRRYCXXXXXXXXXXXXMISIGKEIEIMKTENVHLREKLAEHEKSHEEQPKDGGELVTTNGGTNGNPDSSSMFFHGDDEETPPTTPRDINSLANPFSP-----SMPSPRNNSENLFDASFETSFPPNSSSAKPTATEGDLFDPFSTATTTYVSQGDNGLNSLSSQNNVDLFGTSSAFNTSP 1245
W+H + + + + Y AK+LG+TEV++ KGTEVV++A++KLK +KK+E G K+P+VE+ ISI +K+++ +T+++ LHR+S+CADD ++K++F FI KD E+ +H C+VF +K A ++T+T+GQAF +AYR++ E+ +++ K++ + K I+ ++TEN+ L+ K+ + E +L T P + SM TP + DI + PFSP SMP+ RN ++ P S+ K + FDPF+ + + L+ + + L + F P
Sbjct: 13 WMHTPEALSKHFIPYNAKFLGSTEVEQPKGTEVVRDAVRKLKFARHIKKSE----GQKIPKVELQISIYGVKILEPKTKEVQHNCQLHRISFCADDKTDKRIFTFICKDSESNKHLCYVFDSEKCAEEITLTIGQAFDLAYRKFLESGGKDVETRKQIAGLQKRIQDLETENMELKNKVQDLE----------NQLRITQVSA---PPAGSM--------TPKSPSTDIFDMI-PFSPISHQSSMPT-RNGTQ-------PPPVPSRSTEIKRDLFGAEPFDPFNCGAADFPPDIQSKLDEMQEGFKMGLTLEGTVFCLDP 299 The following BLAST results are available for this feature:
BLAST of TCONS_00024189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.