TCONS_00024197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024197
Unique NameTCONS_00024197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1202

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024197 ID=TCONS_00024197|Name=TCONS_00024197|organism=Clytia hemisphaerica|type=transcript|length=1202bp
AAAATGTTAATCAATGCACATGCTTAGGATTGgagttgaaaatattgaaa
aaggtTGTCTCTCGTTTTAGATGGTTTGAATGATGAGATATTGGTGAGTG
TCAACATAACACACTTCGAGAGGTGAAGAGAAATAGATAATTTGTCTCGc
gaaaacaaaatggcagcACCAGAAAGTGTGGAATTACTGGCGATGGAAAG
AAAGGAAGAGCGTGACAAAATGGAGAACCACATCGAAGAAGACATGTCTT
CTGATCAGCAGAAAAGGCTGGAGAAGATCAAAGCCAGGGATCTGGAGAAG
TTGTCTCAGGAACAGATGAATAGGTGCCATCACGTCAGCTTCGAACTCGG
CCCGTTTTCGTTTTATTTCAACCCTGTTACGACACTTCTGTCGGCGGCAA
TTATTTGGCTTTTCGTCATTTTGGTTGTGGTCTTTCCAGAAGATGCTGAA
ACAATTATGGCAGATGTCAAAGATTGGATTACCGACAAATGGACATGGCT
TTATGTTGCAACCCAAGATGTCTGGGCTTTTTTTATCATTGCACTTTACT
TCTCCAAATATTCGAACATGCGGCTGGGCAAAGACGACGAAAAACCAGAA
TTCAACGATGGGACATACTTCATGATGTTGTTTTCAACTGGAATTTCTAT
CGGCCTTTTCTATTATGGCGTCGCTGAGCCAGTCTCACACTATAGAACAA
AAGATGAATATGGAAACAGATACCAAAACAGGTACTCTGACAATCAAGCA
GCTCAAGATGCTATCAATTTGACGTACTTTCATTGGGGAATTCACGGTTG
GATTGTATATGTGGTCATCGGTTTGCTGCTCGGATTCTTGAGTTACCGAA
AAGGATTACCGTTAACAATGAGGACCTGCTTCTATCCGATTCTCGGAGAT
CTCATTTATGGAGTGATTGGAGATATGATTGATACTCTGTGTATCATTTG
TACACTGTTTGGTGTCTGCACCAGTCTGGGGTTGGGAGTCATGCAATTGA
ACAATGGAATTCATCGAATCAATAGCGATATTGCTGAAAGTACCGACAAC
CAAATTATCATCATTTGGTGTGTCACAGCTTTGGCTACCATTTCTGTTAT
CAGTGGTTTGAAAGTCGGAATTCGAAGATTATCAGAAATTTGTTTCGGAA
TCGGTTGTTTCATCatgtttttcatctttttctcaTCTGATACTTGGTac
ct
Run BLAST on NCBI

transcript from alignment at sc0000478:97110..103318-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024197 ID=TCONS_00024197|Name=TCONS_00024197|organism=Clytia hemisphaerica|type=transcript|length=6209bp|location=Sequence derived from alignment at sc0000478:97110..103318- (Clytia hemisphaerica)
AAAATGTTAATCAATGCACATGCTTAGGATTGGAGTTGAAAATATTGAAA
AAGGTTGTCTCTCGTTTTAGATGGTTTGAATGATGAGATATTGGTGAGTG
TCAACATAACACACTTCGAGAGGTGAAGAGAAATAGATAATTTGTCTCGC
GAAAACAAAATGGCAGCACCAGAAAGTGTGGAATTACTGGCGATGGAAAG
GTGAGAATATCTTCTTTGCGGGTACATGTTCTAAAAAACTACACGCTTTT
CTTTATAATAATGTCCATGATAAAAATGGGTAAAAATTAAGAATACAGTA
ATGCTAAGAATATCACCATCATGGAATTTCGCTACTCAAGCTAAGAATGT
CATTTTTAGAGCATTTTCAATTATGAATTGCCAATTATCCCCAAGTAAGG
CTCACTCCTTTCACAAAAATGCCATTTTATGCTTGAGACGTATGTACTAA
ATGTTAAATCTAGTCTGAATTGAGATCCTAACCTAAGAATGCTGTAAGAA
TATTTTAGGATGATTTTCCCAAAAAAGTTAAGAATATCCATGATGAAATG
GATTTACACCATTTAAAAAAAAAGCGTGTAGCAAAAAGGAAACGACGACC
CGAAAAAAATGGGTTGTAACCAATGAAGTATAAGCCCGAAGGGCTAGAAG
TCAATCTCCTTGGTAGGATTTGAAGCCAACAAATCTTACCAAAGTTGCGC
GGCCTTGAGCGGCTCGCCTGGTTTTTACACAAATGATAGATTGAAATTAA
AATTTACCCCTAAATTTCGAAAAAAATATCAATCGTAAACAAAGGAATTG
CTAGATTCAATCTGTCGTCAAAAATACGGCGCATTTTTTAAGGCTTCACT
TTTTCTTGCCTGAGAAAGGTTAGAGATTGAACTCTAGCCCTTCGGGCTTT
AAACTCAATGGTTGTAACCGTAAGAAAGATCTTAAAATCTTGAGTTCAAA
AACGAACTTTCAGCCTCCTCTCCATTTACTCAAAAGCTAAAAGAACTTAA
AAGTCTTATAACTAAACACCCCCTTCTCACAACAGACCCACAGGGAACCC
CTTCCCACTGGAAATATTGGCCAAAATATCGTCCCCAGTGGAAAATTATA
ATCTAATTTTTGTGCCCTCTGAAAATAATCAAATAAGCAAACAAGATAAT
GCAAAATATTGTGCTATTTTTTACATCTCCACCGTATTTTCTGGCTAGAT
AAAAATGGAATTCAAATCCTTAGTCATAAAAAACTTGAGAATATCAATCT
CCATCGAGTTTCGGTCCGTTATTTTTATTCCCACTAGCTGATAAAATCCC
ACCAGGTCAGTGAGAAGGGAGTGTAACTAACTAGCCTCAAAGATTTTTTA
AGCTGATTAGGAAGAATATTATGAAAGAGGAACATCACTAAAAGTATTAA
TNTATTGGCCTCAAAGATTTTTTAAGCTGCTTATAGGAAAAATATCATGA
AAGAGGAAGAAGCATCATCATGATAATGTCGCGAGTTCGCTTTAAATTCA
AAACCATTATCTCTATTATGAAAATTGTTCTAACGTGAATCACTTAACTG
AGTTACTTCACGAAAATAATCTCCGAGCAGATTCTGATACTCCACGCATG
GCATGTATTCATTCATTCAAGGCTATGGTTCCGTAAGAAATTCATTCGTC
ATATTCGCCATATCCCCGTAGACCAGAACGTAGTATGCACAGTATGATCT
GTTATAAGAATACGATAAAATGCGCAAACTTCACAATTTCTGTGAGAATA
TCTTCAAATTCGTTCGATTGCATTGGAAACACAATTTTATGCATTTCGTT
TTCGAAAAACGCGTGTTATACAAATTGATTTTACAAGAATCTTGTTTCAA
TCTAGGTATCAGAAAAGAACACATTCAGAACAAGGAGCCAAGTTTTTCTT
GAACCAATGGCTGGAAAATATAAACAGCATTTAAGTGAAAAATAATGATA
TAGGGGAGTCTCTTTCACTTGAATGCCTCTTTATTTTAACTCAAAGCTTC
CTTAACTCTAAAAATTTGTGTTCAAATGCGTGTTCGGGTTATGGAGACTC
CATTGCAATGAGAAAAGTTCACCGTGTTGCGAAGGTAGAGCATTGACCAA
GGTGGTCCTGACAGGGTCATACCAAGTCTTAGAAAATAGAATCTGACGTC
TCTATCTATTTAATACCTAGCCCGGGGTCCACTTAAAGCTTTTTTATAGA
CTGGATGGCGCGATTAAGTGGCCCGGTTGTATATATTAATATGCTTTTGC
TTCGGCGGACTGTAAAACAGTCTGATAGATTTTAGTTGTTTTTGGAAGAT
AAAAACAGTATGAAACAATGTTTTTATTTGAGAATAAGAGATTGCAAATC
TGTTATTGATGTTTGTTTCTCATTTTTGATTATATCTTTCAACTCCTACA
CTGGACTCAGCGTCATCAAAAATCATCAAAACGCAAAGTTCAGTCAGAAG
TACGACTCTAGTCTATTTAATACCCAGCATTCATAAATTTTTCTTACGAT
GCTACGGAAATTCGACAACCTATCATGAAAAAAATTATGAAAAAGTTGTT
CAGCCATTGCAGTAAAGGGTATTTTGGAGTCTTATTCCATTGCAAGTAGC
TTGAAAACCGCTGCATACAACTCTCACAAAGCAAGAGGAAAAAACAATGA
CTTATAAAAAAGATGATTCTTATTCTCCCATTATGAGAAAGATCATTGAG
ATTATAATCAGCCAATAAAAGTTGTAAAATATTTCTTGTCATTGAGGTTT
TAATCGAATTACTGTTGTACTTATATCATTTTGACTTTGTATTTTTTCCT
CCGTTTTGCAATGAAGTTCAAATATACCGTCATCTGATTCGCTTTGATCG
AATTATTATTGAGTTATCTAGATTTGATAATCTTCCATTGACCAATGAGA
AACAGTTTTGTAAAGTCATTTCATAATGATGGTCCGTTTTATAATGACGA
TAAGTCATCTTTATAATGTATGCAAAAAAATCAAGTACAAGGGTGTGGAG
GTACTTAGAATGAGTTCGAGGAGATAATTCAATTTACATGCGACTTTGGT
AGAGTGAGGTCGAGAGAAAGAGAGATGGGGATGTGAAATGCTTTGAAAAG
TTTTGAGTGATTGCGCAGTGATTGGTAGTTAGTGGTTAGTGGTCGTTGTT
ACTTTGCTTTTGTTCTACTGTTGCAAGATTGAATAAAATGTTTAACTCAA
GCTGTTGAGGAGTGGTGTAGTTGCTAAGTGAATATATTTGATTTGATAGA
CTTTTATAGATTTGGTAGACATTTGAACGCGATTTGAATAGAGGTGACCT
CAAGCGTCGTTAATTACTCTATGTAACAGTCCATACTACATAAATACTAT
TTTTTTCTAAGAGGCTTCCGAATGGTGTCCGTGATGACGTGATTCCAAGT
TTTTCGGTCGTGATGAGCAAAAGGGCAAAAACTTTTATTCGTTATTTGTG
ATTCGTTCTATTTTTCGCTATGTTTTGGCAATTTTTGTGATCGTGATGAA
ACCAGGCTCGGATACAGAGGGAGGCTATAACCAATGAAGGAGAGTGCACT
TTATTATGGTATTACCTTATATGGAAACTAATTACTCTCCATGAATAAGA
TAGCCTACCTCCTGTATCCGACGCTGGAAACCAAGAAAAATTGGAGAAAT
GGCGTGATGAGATACTGCTGGGGTAGGGGCTCCTCTAACACAGATGTTGT
AAAGTCAGACTTTTATTTTGTGTTGTTTATAGAAAGGAAGAGCGTGACAA
AATGGAGAACCACATCGAAGAAGACATGTCTTCTGATCAGCAGAAAAGGC
TGGAGAAGATCAAAGCCAGGGATCTGGAGAAGTTGTCTCAGGAACAGATG
AATAGGTTAACTAATCAATACTTCTTTTTTTCTAGCAATGATGGAAAGTA
CTAGGGATTTAAAATCCATTATTTCATCTCCGAATCTAAACATGCTCAAA
CAGTTCAAATAATTTGCAGAAACATCAAATTTGTTCACTAGGAAGCAAAA
AGAAAAATAGTATCAATTTTATGATCGACAATTTTTTTTGCTTTTACAGG
TGCCATCACGTCAGCTTCGAACTCGGCCCGTTTTCGTTTTATTTCAACCC
TGTTACGACACTTCTGTCGGCGGCAATTATTTGGCTTTTCGTCATTTTGG
TTGTGGTCTTTCCAGAAGATGCTGAAACAATTATGGCAGATGTCAAAGAT
TGGATTACCGACAAATGGACATGGCTTTATGTTGCAACCCAAGATGTCTG
GGCTTTTTTTATCATTGCACTTTACTTCTCCAAATATTCGAACATGCGGC
TGGGTAAGTTTGGATAAATTTTCGTGAGCAGATATTTTCTTAAACATTCT
TTTCCAAAATGATTTAATTTTCGTGGGACTTATTTCTGGAAATCGGCTCC
TTTTTTAAACTAATTTCGCTCATTTTCGTAACGGTTTTAGTCAAAAAAAT
TCTGATTTCAAAATTTTCACAAACATTATTAAAATACTAGTAAGGAAGAT
ATAGCTCCGAATCGTGAAATCGAATTTGAAATCTATAAAGAAAGGTGCAT
AAGTTTAGATAGTAAACCAGTTTTTAAAACCGCTTCATCTCTAGATTTAG
CCCGTTGGGTAGCTAGGAGGGAGAGAATGGCGACAACTGTTAAGTTTGGT
CAAAGGACCGATTCTTTTTTTTTCACTCTAATTTCTATCAAACAAAAATT
ATGAAAATGCCTAAGTTAAGGGTTTAAAGCAACAGATTTCCATTTAGATT
GATCCATTTATTTCCAGGCAAAGACGACGAAAAACCAGAATTCAACGATG
GGACATACTTCATGATGTTGTTTTCAACTGGAATTTCTATCGGCCTTTTC
TATTATGGCGTCGCTGAGCCAGTCTCACACTATAGAACAAAAGATGAATA
TGGAAACAGATACCAAAACAGGCACGTGCTGTTACTCTTTAATTTGTTTA
TAACAACTTGGAGGTTATTGTCATGATAAAAGTCGTACCAAAAATCTTAT
ACTTCTTTTGTATTACAATAACACCATCATCGATCACATGTGTTATTTCT
ATCAAACAGGTACTCTGACAATCAAGCAGCTCAAGATGCTATCAATTTGA
CGTACTTTCATTGGGGAATTCACGGTTGGATTGTATATGTGGTCATCGGT
TTGCTGCTCGGATTCTTGAGTTACCGAAAAGGATTACCGTTAACAATGAG
GACCTGCTTCTATCCGATTCTCGGAGATCTCATTTATGGAGTGATTGGAG
ATATGATTGATACTCTGTGTATCATTTGTACACTGTTTGGTGTCTGCACC
AGTCTGGGGTTGGGAGTCATGCAATTGAACAATGGAATTCATCGAATCAA
TAGCGATATTGCTGAAAGTACCGACAACCAAATTATCATCATTTGGTGTG
TCACAGCTTTGGCTACCATTTCTGTTATCAGTGGTTTGAAAGTCGGAATT
CGAAGATTATCAGAAATTTGTTTCGGAATCGGTAAGATTTATAGAAGTAA
AAGAAAGACTCCCTTCTGCATCTGTGGTCTATTTTCCATCTCTAAAAGAG
GAAGACTAGCAAATATGTGACTTCGCATCCGGGGTGGGTCGGGTATTAGG
GTTGGCGGACGGGACCTCCGAAAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAATTTGAGAAAATTTTGGAATTTCAGTCC
CATTCAGGGTCACTTTTTTCGCAAATTTCTAGTCCCACGTAGGGTCCATT
TTTCGAACCTCAGCGGAGCACCTCCATCGGTCGACAAGGGTAGTACCCCC
CCGGGCTTTGAACATCTTCCTGATCTGAATATCATCCCGTAAAGTATCAT
GTGCTAAAATTAAAGCATATTGATAAAGAAGATGGCATATTCAACCCCTG
AATCTAAATCTGTTTACACTTTAGGATAACATTTGAAACTTCTTTTTCAT
CCATTTTCAGGTTGTTTCATCATGTTTTTCATCTTTTTCTCATCTGATAC
TTGGTACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013578XLOC_013578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024197-exon-sc0000478-1575043694:103119..103318TCONS_00024197-exon-sc0000478-1575043694:103119..103318Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1575043694:99464..99586TCONS_00024197-exon-sc0000478-1575043694:99464..99586Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1575043694:99016..99269TCONS_00024197-exon-sc0000478-1575043694:99016..99269Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1575043694:98398..98551TCONS_00024197-exon-sc0000478-1575043694:98398..98551Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1575043694:97838..98259TCONS_00024197-exon-sc0000478-1575043694:97838..98259Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1575043694:97110..97158TCONS_00024197-exon-sc0000478-1575043694:97110..97158Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1510915933:103119..103318TCONS_00024197-exon-sc0000478-1510915933:103119..103318Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1510915933:99464..99586TCONS_00024197-exon-sc0000478-1510915933:99464..99586Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1510915933:99016..99269TCONS_00024197-exon-sc0000478-1510915933:99016..99269Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1510915933:98398..98551TCONS_00024197-exon-sc0000478-1510915933:98398..98551Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1510915933:97838..98259TCONS_00024197-exon-sc0000478-1510915933:97838..98259Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1510915933:97110..97158TCONS_00024197-exon-sc0000478-1510915933:97110..97158Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1491911889:103119..103318TCONS_00024197-exon-sc0000478-1491911889:103119..103318Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1491911889:99464..99586TCONS_00024197-exon-sc0000478-1491911889:99464..99586Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1491911889:99016..99269TCONS_00024197-exon-sc0000478-1491911889:99016..99269Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1491911889:98398..98551TCONS_00024197-exon-sc0000478-1491911889:98398..98551Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1491911889:97838..98259TCONS_00024197-exon-sc0000478-1491911889:97838..98259Clytia hemisphaericaexon
TCONS_00024197-exon-sc0000478-1491911889:97110..97158TCONS_00024197-exon-sc0000478-1491911889:97110..97158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:97110..103318 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.119789	0.587499	6.22278	5.81249	3.39375	3.18572	1.53756	1.17792	44.562	45.8933	5.00365	6.74317	57.1565	64.5034	76.4658	70.4352	62.2054	59.9123	2.93368	9.56026	38.1621	25.372	26.214	40.4624	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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