TCONS_00024244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024244
Unique NameTCONS_00024244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024244 ID=TCONS_00024244|Name=TCONS_00024244|organism=Clytia hemisphaerica|type=transcript|length=2258bp
AGAACTTACTACtaaatttattcaaatgaaCATATAAACAAGAGAATAAT
ATGCTGGTATCTAAACCCAACAATGTTTCAGTGTACAATCTCTCATCAGG
GAAATCTCTTCCTGAATGGATCTCCGACCGAAAGAAAAGACAGCTCTTAA
AGAAAGATGTCGACCTTCGCCGTCGGATTGAGCTTATCCAGGATTTTGAC
ATGCCGACAGCTTCCAGTTGTGTCCGGGTGTCGCCTGACGGACAATATTT
GCTGACGTCAGGTGTTTATAAACCACGAATCAAATGCTTTGACGTCCAAC
AATTATCTTTAAAGTTTGACCGTTGTTTTGATTCAGAATGTGTCAAGTTT
GATTTCCTCTCTGATGATTTTTCCAAACTTGTCCTGTTACAATCTGATCG
ATATGTGGAATTCCACGCCCAATATGGGCGTTATTATCGCACGAGAATGC
CGCGATTTGGGCGAGATTTAGTCTATCACAAGCCGTCTTGTGATTTGTAT
CTCGTAGGTGACGGTGCAGACATCTTCCGTTTGAATTTAGAGCAAGGACG
TTTTATGCAGCCATATACCACTCAATCTAAAGAAATCAACGTATGTAAAA
TCAACGAAGAGCATCAGTTACTCTCCGTCGGAACTGTTGACGGAAAAGTC
GTTTGCGTTGACCCGAGATCTCGTTCTATTGTTGGTACCCTCGATATTAC
CGACCATAAAGTATTCCAAGGTTTGGATACTACTCCCGAAGTGACCGCCC
TTCAGTTTAATGGTGCATTAGAGATGGGTGTGGGTACATCGACAGGTCAC
GTCATGTTATATGATATCCGTTCAACTCGTCCTCGAATCGTCAAAAACCA
TTATTACGAACTGCCAATCAAAAATATACACTTCCACCAGCATAACAACC
GCATAGTAACCGCTGatacaaaaatcatcaaaatttgggACTACGAAACT
GGCGATAATTTCACCTCTATTGAACCTGGAGTGACCATTAATGATATTTG
TGTGTACCAAGATTCAGGTTTGATCTTCCTTGCTAATGAAGCTCAGAAGA
ATTCAGTGTACTACATTCCAGCACTGGGACAAGCTCCACGCTGGTGTTCT
TTCTTGGATAACATAACTGAAGAACTTGAAGAATCGAATGAGATTATTGT
TTACGATGATTATAAGTTCGTTACTAACAACGAATTAGATGATCTTGGTC
TTGCGCATTTGAGAGGTACCAATGTTTTGCGTGCCTACATGCACGGCTTC
TTCTTGGACATGCGTTTGTATCATAAAGCCAAATCGATCGTTGAGCCGTT
CGCTTATGaagaatatcgtaagaataAGATTAAGGAGAAGATTGAAGAGG
AGCGAGCATCGAGAATTAAAATGTCTAAAATACCAAAAGTCAACAAACAA
CTTGCGGAGAAACTGATCGAAGCGAAAACAAAGAAGAACGGAGAAATGGA
AGATGAAGGCACTAAAAATCCGTTGGGTGATGATCGTTTTGCGTCCATGT
TCACCAACAAGGACTTCCAAGTGGACATGGAAAGTGAAGAATATCGTCTT
CTACATCCCGTTGTTTCAAAACAAGACAAGGCGGCAAGGCGGAAACAAGA
GGCGTCCGATGATGAAGCTAGCGATTCGGGTTCCGATGATAATCACGAGC
TCTGGGAACAGATCAAAATGACAAAACGCAAAGAGCGGAACGCGCTCAAA
GCTTCGGCGATCGCTACTGGTGGTGTTggcaaagaaaaagtcaagatgTA
TTCATTGAAGGAAGGCGTTGATGATAAAATGAACGGCCGCGCGGTTGAAG
GAAAGAGAAACAAAGCGTTAGGGGAGCTCTTGAAAGAGGACACTGGGCGC
AATATTGTCGAAGAAACAGGCACGGCCCTTGGGAGCCGAGAAATTACTTT
CACTCTTGAGAAAGAGAAACGGAACTTTAAGCACGAGGAAGCTTTGAAGg
ctcataaaaaagaaaggaaaaagttaCGTCGGCCGATGGGACAATTATTA
GCGGTCGAGAAAAAGAAGCCTGTCTTTTGGAGGGGAAAGAAAGTATAGTA
GCATGTATGGTTCGAGGggttttataaagtttttatttttaattcaaacA
ATTTATATCATAGTTTGTATCAATTAATATGAGCTAGATAAATATGGAGG
TACAATAAAGTTCAAAATGTATTGACAATTTtaggtattttaacgttttt
tggaattaaaagttctggcgagaattACGATTTCGCCTCTTCCACTTTTT
CATTGGGT
Run BLAST on NCBI

protein sequence of TCONS_00024244-protein

>TCONS_00024244-protein ID=TCONS_00024244-protein|Name=TCONS_00024244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp
MLVSKPNNVSVYNLSSGKSLPEWISDRKKRQLLKKDVDLRRRIELIQDFD
MPTASSCVRVSPDGQYLLTSGVYKPRIKCFDVQQLSLKFDRCFDSECVKF
DFLSDDFSKLVLLQSDRYVEFHAQYGRYYRTRMPRFGRDLVYHKPSCDLY
LVGDGADIFRLNLEQGRFMQPYTTQSKEINVCKINEEHQLLSVGTVDGKV
VCVDPRSRSIVGTLDITDHKVFQGLDTTPEVTALQFNGALEMGVGTSTGH
VMLYDIRSTRPRIVKNHYYELPIKNIHFHQHNNRIVTADTKIIKIWDYET
GDNFTSIEPGVTINDICVYQDSGLIFLANEAQKNSVYYIPALGQAPRWCS
FLDNITEELEESNEIIVYDDYKFVTNNELDDLGLAHLRGTNVLRAYMHGF
FLDMRLYHKAKSIVEPFAYEEYRKNKIKEKIEEERASRIKMSKIPKVNKQ
LAEKLIEAKTKKNGEMEDEGTKNPLGDDRFASMFTNKDFQVDMESEEYRL
LHPVVSKQDKAARRKQEASDDEASDSGSDDNHELWEQIKMTKRKERNALK
ASAIATGGVGKEKVKMYSLKEGVDDKMNGRAVEGKRNKALGELLKEDTGR
NIVEETGTALGSREITFTLEKEKRNFKHEEALKAHKKERKKLRRPMGQLL
AVEKKKPVFWRGKKV
Run BLAST on NCBI

transcript from alignment at sc0000482:87074..95089-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024244 ID=TCONS_00024244|Name=TCONS_00024244|organism=Clytia hemisphaerica|type=transcript|length=8016bp|location=Sequence derived from alignment at sc0000482:87074..95089- (Clytia hemisphaerica)
AGAACTTACTACTAAATTTATTCAAATGAACATATAAACAAGAGAATAAT
ATGCTGGTATCTAAACCCAACAATGTTTCAGTGTACAATCTCTCATCAGG
GAAATCTCTTCCTGAATGGATCTCCGACCGAAAGAAAAGACAGCTCTTAA
AGAAAGATGTCGACCTTCGCCGTCGGATTGAGCTTATCCAGGATTTTGAC
ATGCCGACAGCTTCCAGTTGTGTCCGGGTGTCGCCTGACGGACAATATTT
GCTGACGTCAGGTGTTTATAAACCACGAATCAAATGCTTTGACGTCCAAC
AATTATCTTTAAAGTTTGACCGTTGTTTTGATTCAGAATGTGTCAAGTTT
GATTTCCTCTCTGATGATTTTTCCAAACTTGTCCTGTTACAATCTGATCG
ATATGTGGAATTCCACGCCCAATATGGGCGTTATTATCGCACGAGAATGC
CGCGATTTGGGCGAGATTTAGTCTATCACAAGCCGTCTTGTGATTTGTAT
CTCGTAGGTGACGGTGCAGACATCTTCCGTTTGAATTTAGAGCAAGGACG
TTTTATGCAGCCATATACCACTCAATCTAAAGAAATCAACGTATGTAAAA
TCAACGAAGAGCATCAGTTACTCTCCGTCGGAACTGTTGACGGAAAAGTC
GTTTGCGTTGACCCGAGATCTCGTTCTATTGTTGGTACCCTCGATATTAC
CGACCATAAAGTATTCCAAGGTTTGGATACTACTCCCGAAGTGACCGCCC
TTCAGTTTAATGGTGCATTAGAGATGGGTGTGGGTACATCGACAGGTCAC
GTCATGTTATATGATATCCGTTCAACTCGTCCTCGAATCGTCAAAAACCA
TTATTACGAACTGCCAATCAAAAATATACACTTCCACCAGCATAACAACC
GCATAGTAACCGCTGATACAAAAATCATCAAAATTTGGGACTACGAAACT
GGCGATAATTTCACCTCTATTGAACCTGGAGTGACCATTAATGATATTTG
TGTGTACCAAGATTCAGGTTTGATCTTCCTTGCTAATGAAGCTCAGAAGA
ATTCAGTGTACTACATTCCAGCACTGGGACAAGCTCCACGCTGGTGTTCT
TTCTTGGATAACATAACTGAAGAACTTGAAGAATCGAATGAGATTATTGT
TTACGATGATTATAAGTTCGTTACTAACAACGAATTAGATGATCTTGGTC
TTGCGCATTTGAGAGGTACCAATGTTTTGCGTGCCTACATGCACGGCTTC
TTCTTGGACATGCGTTTGTATCATAAAGCCAAATCGATCGTTGAGCCGTT
CGCTTATGAAGAATATCGTAAGAATAAGATTAAGGAGAAGATTGAAGAGG
AGCGAGCATCGAGAATTAAAATGTCTAAAATACCAAAAGTCAACAAACAA
CTTGCGGAGAAACTGATCGAAGCGAAAACAAAGAAGAACGGAGAAATGGA
AGATGAAGGTATGAATAGTCATTTGTTTTGTTTGCTTATTTTAAAGACTT
TTCTTCGAATCCTTATTATTGAATTGAAATGGGTATACATACAGGTCTCT
TGATAGTTTATTCCTTTTTTGAGAACCCGAACTAGAACCCATTAATATCA
TCGTTTGGTTTTAAACTGCTTCAGGAGAAAGGTTAGTGAGGGTTTGATAT
ACAAGTCGGATATTGAACTTGGTTATGTATGTGGCAAAGTTGGAATACCT
AGGTACATGAAAATAGGAGTTGGTTCGGCAGGAAAATGTCAAGATGCGCA
TGCATCTTTTTTGAAGTTTTGAATGAGACTTTGACCCATTTAAAGCCCGA
AGGGCTTGAGTAGAATCTCTAACCTTTCTCAGGCAAGAAAAAGTGAAGCC
TTAAAAATGCGCCGTATTTTTGACGACAGATTGAATCTAGCAATTCCTTT
GTTTACGATTGATATCTTTTTCGAAATTTAGCGGTAAATTTTAGTTTCAA
TCCGTCATTTGTATAAAAACCAGGCCAGCCGCTCAAGGCCGCGCAACTTT
GGTAGGATTTGTTAAGGAGATTCGATTCTAGCCCTTCGGGCTTATTCTTC
ATTGCTTTGACCTCTCATATATTGCGTATGACAAGTGGTAGTGAAAAAAG
CATAGTATAAAGTTTTAAGAGCGGTCTATGGAACAAAGTGGCGCAGTTTG
GATAGAATGCCATTCGACCTTTTAAAGGGGAACTCAGCAAATGTTGGATT
TTTTTGTTTCTATCCTGAAATGGTTTGTTTCAAAGATAAATTTCAAGGTT
GCAACTCTCCTTTCACTCTAAAAATTTGTTTGATGAGCTTTTAAAAAGAG
GCTCCCCTCTACTAAAATGAAATTATTTATCAAATAAAAAAGACGCACTT
TCAGCTGTTTTATGACGTCGCTGTATTCAGAAAGTCGAAGATGCTAATCA
AAATCGAAATTCCACGCTTGAAATTCATCGGAAAAAGTCCAAGATATTTG
ACACGTAGGAAATGCCATCAATATTGAGATTCATGGTATTCGGGTACAGA
TTAGACTAGAGTCTACTTTTAGCTGAACTTTGCTTTTTGATAATTTTTTT
ATGACGCTGAGTCCAGTGAAGTAGACTAGGAGCATTTGGCAAAGTCGCCA
TTTTGAAAAAAAATATTAAAAATCCAAATAACAATAAAACTACTTGGAGT
TGAAAGATATAATCAAAAATGAGAAACAAACACGATTAACAGATTTGCAA
ACCCTTATTCTCAAATAAAAATATTGCTTCATACTGTTTTTACCTTCCAA
AAACAACTAAAATCTGGCGGACTGTTTTACAGTCCGCCTAAGCAAAAGCA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCAGTCCGCCTAAGCAAAAGCATATTACCATATACTACCGGG
CCACTTAATCGCGCCATCCAGTCTATAAAAAAAGCTTTAAGTGGACCCCG
GGCTAGGTACAGATTTATTTGCTCTTCTAAACAGAATAACCTCAGTTTTT
GAAGCATTATTAAGAAAGCTTGAGGAAGGTCATTTATATTTATATTTCTA
TAATAGAAAAAGTAGAGGCCCTAGCACAGATCCCTGGGGACATTACGAAC
TTATTCGGAGAAACCCTCTTAATATACTTTCTATAATCCGAATCTATCCG
TTCAAATTCAAATTAGCGACAGTCATCTGTNAACCCTCTAAATATACTTT
CTATAATCCGAATCTATCCGTTCAAATTCAAATTAGCGACAGTCATCTGT
AGTTTATTTTCGCGAGATTTCATTTCATGCAAGTTTTTAAAAAAATTTCT
AGTCTTTTTATTATTTTTCAGCGTAGTGATTTCCTAGGATATTCATATTT
TAGGCCAGTTCCTTTGATAGGATGGTTCACTCTCTCTCTCATCTGGATTT
ATTTTCGTGAATCAGCATTTTTGAAAAATATAGATGGATTTAACCCTTTA
AGTGCCACGGTCATTTTTTTCTAAGTTTTATAAAGAAAATCTCTACTTCA
AACTTTAAAGGCTTATATCTCCGGATCTAGAAGGAGTTAGAAGCTCGTTT
ATAGTTCGTTGGATAGCTTAGAGCCTCCTCTTTCTGTGCGGACCTGCCTA
AATGATAGAAAGATGCCCAATGGTAAAACTTCAAATCAATTCGCTGGATG
ACAGAATCAAGTAAAGCAAGGCCAAATTAGGAGGTTCTGGGATCACTCGT
TCATCAAAAATGGTCAAAAAGCAGTCAAAATCTTAAAAAAGTGGATTTTT
TGTATTTTTTTATGACTTTTTAGCTTAAAATCTCGCTGGAAAGACTCACC
TTTGATTTTTTTTTTGCTTGGCCATGAAGACCAATCCAACTCCTATTAGT
TAGACCAAAAATGACGATTTCTAACTCAAACTGGGCATTACAGGAGGGCT
TCGCCTCCTACATAGCCCATGTCATGTCACTTAAAGGGCTAATTTTACAA
ATCAGCCAAAATTTGAAAGTGGCCGAGTATACGCCGAAAAATGACATACA
TGTTTTTTTATAAGCAAGTGTCAGCCCTTTGGTCAGGCTCGAGTATGCTT
AAGCTTTCAAAGCTTCCAGGCATAGCATATGCTTTTTATATGCTTATGAA
TTATTATGCTTTTGATTCACCCAACCCAATTTTTTATAAAATCTCAGAAA
TTTTGTTAACATTCGATTCAAAAAGCGTTTAGATTTTTGGAGCAGTGGAA
TGTGGCTAGTCGTGGAATGTCTTTTTTTACTTGACCACTCCCAAACCCTT
TTGAACAGAAAAAAGATTGACCACATGAAAAATATTTCAGGCTGGCGTAT
ATCGCCGTGTCAATTCAAGACAGCCTCAAAAGTCCATTTTTTGGACCTAC
CCCGGTCCTATAAATTAACCTGTGTTCGTTCGTTCGTTCGTCCGTTCGTC
CGTTCGTCTGTTACCAACTTTTCTCAGGATTGAATCATAGGAATCTTTTC
ATTTTTGGTACAAAGGTGCAAAATGGTATTGCCTAAAATGTGACGGAGCC
CGATTTTCGAACAAAAAAATTTAGGGGCAAAGTTTGGCCAAAAAAACGCT
AAAGAACGGGTTTTTTGGACTTTGGACTTTTGGACTGTGAAAAATTGGAT
CATTAATTTTTTCTAATTTTTTGCATGAAAGTAGGGTACCATCATAGGTA
AAAGATGGCCAAAGCAGATTTTTGCAAAAAAAATTTGTTGGCTCAAAAAA
CACATGTCTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTC
TTAGTCAAATTACTCAATTTTTTTATGAGATATAGATGTTTTTTTTGCTC
ATGAGGGCTTACTTTTGAAGAATATGTGTGTTTAGAAATGAAATTTTGGC
TACTTGGCGTTTTGTTATAGAAAAACTGGCCAAATTCGATTTTTTTTATA
AGCACATTATCAATTACTTAGGTATTACCTTTTCTCGAGATAAGCTCTTT
CATTCTTTATGATTTTTTGCACAAAGATGCATAACTATAAACTCTGTGAA
ATATTGGATCATTGTTTTTTTCTGATTTTTTGCATGATAGTAGGTAAAAG
ATTGCTCAAGCTGATTTTTGTAAAAAACAAATTTTTCAGCTCAAAAAACG
CATGTTTATCTTTAAGAATCACTATTAATAAGCATACATCAATGTTCTTA
GTCAAATTACTCAATTTTTGTTGAGATAGATTTTTTTTTTGCTCACGAAG
TCTTGAATATGAAAGAATATTTCAAATGAAATTTTGGTTTCTAAACGTTT
TTTATAAGAAACAAACGACTAATTTTAATAGATTGTCACTATTTGTGTTC
TGAATGATTGTTTAATGGTCACACTCACGTAGATATCAATTATATATGTG
TTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTTGTTCCATTTTG
AGATAATTGACTTTAAAGGTTTCATTTGCTGATAAGGCGAGGCCAATTCA
ATCTGTTGTTTTACGGTCCAAGCTACCAGAAAAAAAGGGTCGGTCGCGGT
CGGCGAAAAAATAAAAATTAAAGTAGAATTTCACCTATAAAGTATCCTAG
AAAGGCAACAAAAACTACTACATCTTGCCAAAAATGCGAAATAGAAAATA
AAAAGGCACGAAAAGGTCAAAATCATGAATAAAATGGAAAATGAACGTAA
AATTCTCAAAATCTTGGAAAATCTACCACAATTTTGAAAATTTGGGAGTC
TGTAAAGCAACTACCAAAATGAATTTTATTTTTATTTCGATTTTTGGAAT
TTCAGGGTCGGTCGGACCCGTAAAACAACTAATCAAATTGGTCTCGCCTA
ACTAAGTAATAAATAATGCTAAGAGTCCATACCTTTGATATTATGGGGTA
TTATAGTTTTCTTTTTGTGGTTAAAAAGAGGTTTTGATAGCTTGCTTCAG
AGGCTCTAAAATGGCATTTATTGGACTTAAGGCTGTATTGAATTGAACTT
AAAATCTTCATACTAAGCAAGTTTTAAGCTAAAATCGAGCTTTAAAACGT
CTTGAGTCCATCAGTCAGATGTGTTGGACTTAAGGCTACACATTTCATGT
CAATAATTCATAGAAAAATAAAATTTGGACATTAGGCTTCTCAAGACTTT
TTGCCCTAAAATTCAGGATTTAAGGCTGTTTATGGTTGATATTTTTTTTG
AATTGCAAAATACACCACTTTCCTATAAGAATTCTGTGGATTTGAGGCCA
TTTTTTGGAAAGCGTGCATGCTGAAATAGGGGATTATGGTCTTAAGTAAA
TTTTCGAAAAAATGGACTTTATTTTCATGAAAACTCGAAATTATAATCTC
CCGAAAATTTATCTGATTGAAGTAAAATTCAGTCATAAGCAATCTCATAT
TGCCTGTATGTCATGTTACATACCGTTTGAAAGCATTTTTATGCCCGTTT
AGAAAAACATTACAACCTATATCTGAAACTGAAGCCAATAAAAGTTATTG
GGGAAGGTAGTTTGAAAAATTACGTAATTGCTGACGTCAGCAAAAACTCG
AGAACCACCACCCAAACACATTTCATTTGATAGAAATAAACTTTTTTGGG
TGGTCCTTGGATTTTTGCTGACGTCAGTATTGATCTAGGAGAGGGTCAGT
GTATGTGCACCTCCCTGTCTGTCCCTACAAAAACCTTTGGTTAGTAGATT
TAGCTGAAATTTTACGTGAATCCATGGAGTGTTTTAAATTTTTTCAAACT
TTTTATTTAAGGGTCCCGGGGACTAGTTTTTGTCCCAACCTAAGAGTAGG
CTAAAAACTAAGCTTACTTAAAGGTTTTACAATTGGGTCTAGGATGCATA
AGAGAATGAAGGTGAGCCCAACGGAGACTAGAATCGAATCTCCTTGGTAG
GATTTGAAGCCTACCAAATCCTACCAAAGTTGTGCGGTCTAGCGCGGTCC
GCCTGATTTTTACACAAATGACAGATTGAAACTAAATTTTACTCCTAAAT
TTCACAAAAGATATCACTCGAAAACAAAGGAATTGCTAGATTCAATCCGT
CGTCAAAAATACGGCGCATATTTTAAGGCGTCACTTTTTCTTGCCTGAGA
AAGGTTAAAGATTCGATTCTAGCTTTTCGGGCATATACTTCATTGGGTGA
CCCAGTTAGTACATTGGATAGTTTTTAAGTTGAATATTTAAAATGTAAAA
AATGCTTCTTTTTCAGGCACTAAAAATCCGTTGGGTGATGATCGTTTTGC
GTCCATGTTCACCAACAAGGACTTCCAAGTGGACATGGAAAGTGAAGAAT
ATCGTCTTCTACATCCCGTTGTTTCAAAACAAGACAAGGCGGCAAGGCGG
AAACAAGAGGCGTCCGATGATGAAGCTAGCGATTCGGGTTCCGATGATAA
TCACGAGCTCTGGGAACAGATCAAAATGACAAAACGCAAAGAGCGGAACG
CGCTCAAAGCTTCGGCGATCGCTACTGGTGGTGTTGGCAAAGAAAAAGTC
AAGATGTATTCATTGAAGGAAGGCGTTGATGATAAAATGAACGGCCGCGC
GGTTGAAGGAAAGAGAAACAAAGCGTTAGGGGAGCTCTTGAAAGAGGACA
CTGGGCGCAATATTGTCGAAGAAACAGGCACGGCCCTTGGGAGCCGAGAA
ATTACTTTCACTCTTGAGAAAGAGAAACGGAACTTTAAGCACGAGGAAGC
TTTGAAGGCTCATAAAAAAGAAAGGAAAAAGTTACGTCGGCCGATGGGAC
AATTATTAGCGGTCGAGAAAAAGAAGCCTGTCTTTTGGAGGGGAAAGAAA
GTATAGTAGCATGTATGGTTCGAGGGGTTTTATAAAGTTTTTATTTTTAA
TTCAAACAATTTATATCATAGTTTGTATCAATTAATATGAGCTAGATAAA
TATGGAGGTACAATAAAGTTCAAAATGTATTGACAATTTTAGGTATTTTA
ACGTTTTTTGGAATTAAAAGTTCTGGCGAGAATTACGATTTCGCCTCTTC
CACTTTTTCATTGGGT

Coding sequence (CDS) from alignment at sc0000482:87074..95089-

>TCONS_00024244 ID=TCONS_00024244|Name=TCONS_00024244|organism=Clytia hemisphaerica|type=CDS|length=3996bp|location=Sequence derived from alignment at sc0000482:87074..95089- (Clytia hemisphaerica)
GCACTAAAAATCCGTTGGGTGATGATCGTTTTGCGTCCATGTTCACCAAC
AAGGACTTCCAAGTGGACATGGAAAGTGAAGAATATCGTCTTCTACATCC
CGTTGTTTCAAAACAAGACAAGGCGGCAAGGCGGAAACAAGAGGCGTCCG
ATGATGAAGCTAGCGATTCGGGTTCCGATGATAATCACGAGCTCTGGGAA
CAGATCAAAATGACAAAACGCAAAGAGCGGAACGCGCTCAAAGCTTCGGC
GATCGCTACTGGTGGTGTTGGCAAAGAAAAAGTCAAGATGTATTCATTGA
AGGAAGGCGTTGATGATAAAATGAACGGCCGCGCGGTTGAAGGAAAGAGA
AACAAAGCGTTAGGGGAGCTCTTGAAAGAGGACACTGGGCGCAATATTGT
CGAAGAAACAGGCACGGCCCTTGGGAGCCGAGAAATTACTTTCACTCTTG
AGAAAGAGAAACGGAACTTTAAGCACGAGGAAGCTTTGAAGGCTCATAAA
AAAGAAAGGAAAAAGTTACGTCGGCCGATGGGACAATTATTAGCGGTCGA
GAAAAAGAAGCCTGTCTTTTGGAGGGGAAAGAAAGTATAGATGCTGGTAT
CTAAACCCAACAATGTTTCAGTGTACAATCTCTCATCAGGGAAATCTCTT
CCTGAATGGATCTCCGACCGAAAGAAAAGACAGCTCTTAAAGAAAGATGT
CGACCTTCGCCGTCGGATTGAGCTTATCCAGGATTTTGACATGCCGACAG
CTTCCAGTTGTGTCCGGGTGTCGCCTGACGGACAATATTTGCTGACGTCA
GGTGTTTATAAACCACGAATCAAATGCTTTGACGTCCAACAATTATCTTT
AAAGTTTGACCGTTGTTTTGATTCAGAATGTGTCAAGTTTGATTTCCTCT
CTGATGATTTTTCCAAACTTGTCCTGTTACAATCTGATCGATATGTGGAA
TTCCACGCCCAATATGGGCGTTATTATCGCACGAGAATGCCGCGATTTGG
GCGAGATTTAGTCTATCACAAGCCGTCTTGTGATTTGTATCTCGTAGGTG
ACGGTGCAGACATCTTCCGTTTGAATTTAGAGCAAGGACGTTTTATGCAG
CCATATACCACTCAATCTAAAGAAATCAACGTATGTAAAATCAACGAAGA
GCATCAGTTACTCTCCGTCGGAACTGTTGACGGAAAAGTCGTTTGCGTTG
ACCCGAGATCTCGTTCTATTGTTGGTACCCTCGATATTACCGACCATAAA
GTATTCCAAGGTTTGGATACTACTCCCGAAGTGACCGCCCTTCAGTTTAA
TGGTGCATTAGAGATGGGTGTGGGTACATCGACAGGTCACGTCATGTTAT
ATGATATCCGTTCAACTCGTCCTCGAATCGTCAAAAACCATTATTACGAA
CTGCCAATCAAAAATATACACTTCCACCAGCATAACAACCGCATAGTAAC
CGCTGATACAAAAATCATCAAAATTTGGGACTACGAAACTGGCGATAATT
TCACCTCTATTGAACCTGGAGTGACCATTAATGATATTTGTGTGTACCAA
GATTCAGGTTTGATCTTCCTTGCTAATGAAGCTCAGAAGAATTCAGTGTA
CTACATTCCAGCACTGGGACAAGCTCCACGCTGGTGTTCTTTCTTGGATA
ACATAACTGAAGAACTTGAAGAATCGAATGAGATTATTGTTTACGATGAT
TATAAGTTCGTTACTAACAACGAATTAGATGATCTTGGTCTTGCGCATTT
GAGAGGTACCAATGTTTTGCGTGCCTACATGCACGGCTTCTTCTTGGACA
TGCGTTTGTATCATAAAGCCAAATCGATCGTTGAGCCGTTCGCTTATGAA
GAATATCGTAAGAATAAGATTAAGGAGAAGATTGAAGAGGAGCGAGCATC
GAGAATTAAAATGTCTAAAATACCAAAAGTCAACAAACAACTTGCGGAGA
AACTGATCGAAGCGAAAACAAAGAAGAACGGAGAAATGGAAGATGAAGGC
ACTAAAAATCCGTTGGGTGATGATCGTTTTGCGTCCATGTTCACCAACAA
GGACTTCCAAGTGGACATGGAAAGTGAAGAATATCGTCTTCTACATCCCG
TTGTTTCAAAACAAGACAAGGCGGCAAGGCGGAAACAAGAGGCGTCCGAT
GATGAAGCTAGCGATTCGGGTTCCGATGATAATCACGAGCTCTGGGAACA
GATCAAAATGACAAAACGCAAAGAGCGGAACGCGCTCAAAGCTTCGGCGA
TCGCTACTGGTGGTGTTGGCAAAGAAAAAGTCAAGATGTATTCATTGAAG
GAAGGCGTTGATGATAAAATGAACGGCCGCGCGGTTGAAGGAAAGAGAAA
CAAAGCGTTAGGGGAGCTCTTGAAAGAGGACACTGGGCGCAATATTGTCG
AAGAAACAGGCACGGCCCTTGGGAGCCGAGAAATTACTTTCACTCTTGAG
AAAGAGAAACGGAACTTTAAGCACGAGGAAGCTTTGAAGGCTCATAAAAA
AGAAAGGAAAAAGTTACGTCGGCCGATGGGACAATTATTAGCGGTCGAGA
AAAAGAAGCCTGTCTTTTGGAGGGGAAAGAAAGTATAGATGCTGGTATCT
AAACCCAACAATGTTTCAGTGTACAATCTCTCATCAGGGAAATCTCTTCC
TGAATGGATCTCCGACCGAAAGAAAAGACAGCTCTTAAAGAAAGATGTCG
ACCTTCGCCGTCGGATTGAGCTTATCCAGGATTTTGACATGCCGACAGCT
TCCAGTTGTGTCCGGGTGTCGCCTGACGGACAATATTTGCTGACGTCAGG
TGTTTATAAACCACGAATCAAATGCTTTGACGTCCAACAATTATCTTTAA
AGTTTGACCGTTGTTTTGATTCAGAATGTGTCAAGTTTGATTTCCTCTCT
GATGATTTTTCCAAACTTGTCCTGTTACAATCTGATCGATATGTGGAATT
CCACGCCCAATATGGGCGTTATTATCGCACGAGAATGCCGCGATTTGGGC
GAGATTTAGTCTATCACAAGCCGTCTTGTGATTTGTATCTCGTAGGTGAC
GGTGCAGACATCTTCCGTTTGAATTTAGAGCAAGGACGTTTTATGCAGCC
ATATACCACTCAATCTAAAGAAATCAACGTATGTAAAATCAACGAAGAGC
ATCAGTTACTCTCCGTCGGAACTGTTGACGGAAAAGTCGTTTGCGTTGAC
CCGAGATCTCGTTCTATTGTTGGTACCCTCGATATTACCGACCATAAAGT
ATTCCAAGGTTTGGATACTACTCCCGAAGTGACCGCCCTTCAGTTTAATG
GTGCATTAGAGATGGGTGTGGGTACATCGACAGGTCACGTCATGTTATAT
GATATCCGTTCAACTCGTCCTCGAATCGTCAAAAACCATTATTACGAACT
GCCAATCAAAAATATACACTTCCACCAGCATAACAACCGCATAGTAACCG
CTGATACAAAAATCATCAAAATTTGGGACTACGAAACTGGCGATAATTTC
ACCTCTATTGAACCTGGAGTGACCATTAATGATATTTGTGTGTACCAAGA
TTCAGGTTTGATCTTCCTTGCTAATGAAGCTCAGAAGAATTCAGTGTACT
ACATTCCAGCACTGGGACAAGCTCCACGCTGGTGTTCTTTCTTGGATAAC
ATAACTGAAGAACTTGAAGAATCGAATGAGATTATTGTTTACGATGATTA
TAAGTTCGTTACTAACAACGAATTAGATGATCTTGGTCTTGCGCATTTGA
GAGGTACCAATGTTTTGCGTGCCTACATGCACGGCTTCTTCTTGGACATG
CGTTTGTATCATAAAGCCAAATCGATCGTTGAGCCGTTCGCTTATGAAGA
ATATCGTAAGAATAAGATTAAGGAGAAGATTGAAGAGGAGCGAGCATCGA
GAATTAAAATGTCTAAAATACCAAAAGTCAACAAACAACTTGCGGAGAAA
CTGATCGAAGCGAAAACAAAGAAGAACGGAGAAATGGAAGATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013608XLOC_013608Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024244-proteinTCONS_00024244-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024244-exon-sc0000482-1575043694:93632..95089TCONS_00024244-exon-sc0000482-1575043694:93632..95089Clytia hemisphaericaexon
TCONS_00024244-exon-sc0000482-1575043694:87074..87873TCONS_00024244-exon-sc0000482-1575043694:87074..87873Clytia hemisphaericaexon
TCONS_00024244-exon-sc0000482-1510915933:93632..95089TCONS_00024244-exon-sc0000482-1510915933:93632..95089Clytia hemisphaericaexon
TCONS_00024244-exon-sc0000482-1510915933:87074..87873TCONS_00024244-exon-sc0000482-1510915933:87074..87873Clytia hemisphaericaexon
TCONS_00024244-exon-sc0000482-1491911889:93632..95089TCONS_00024244-exon-sc0000482-1491911889:93632..95089Clytia hemisphaericaexon
TCONS_00024244-exon-sc0000482-1491911889:87074..87873TCONS_00024244-exon-sc0000482-1491911889:87074..87873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000482supercontigsc0000482:87074..95089 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.218	28.1803	12.0764	8.66935	24.7741	17.621	18.2761	20.9444	12.3584	18.4525	12.3847	9.34049	11.4348	9.44753	10.2644	13.843	12.4261	12.1236	3.7548	4.77658	11.0657	11.4155	62.1189	47.577	17.1771	19.4614	7.265	7.22131	35.2072	43.6635
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR012580NUC153
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00024244 vs. Swiss-Prot (Human)
Match: NOL10 (Nucleolar protein 10 OS=Homo sapiens GN=NOL10 PE=1 SV=1)

HSP 1 Score: 602.053 bits (1551), Expect = 0.000e+0
Identity = 325/659 (49.32%), Postives = 446/659 (67.68%), Query Frame = 3 
Query:   51 MLVSKPNNVSVYNLSSGKSLPEWISDRKKRQLLKKDVDLRRRIELIQDFDMPTASSCVRVSPDGQYLLTSGVYKPRIKCFDVQQLSLKFDRCFDSECVKFDFLSDDFSKLVLLQSDRYVEFHAQYGRYYRTRMPRFGRDLVYHKPSCDLYLVGDGADIFRLNLEQGRFMQPYTTQSKEINVCKINEEHQLLSVGTVDGKVVCVDPRSRSIVGTLDITDHKVFQG--LDTTPEVTALQFNGALEMGVGTSTGHVMLYDIRSTRPRIVKNHYYELPIKNIHFHQHNNRIVTADTKIIKIWDYETGDNFTSIEPGVTINDICVYQDSGLIFLANEAQKNSVYYIPALGQAPRWCSFLDNITEELEESNEIIVYDDYKFVTNNELDDLGLAHLRGTNVLRAYMHGFFLDMRLYHKAKSIVEPFAYXXXXXXXXXXXXXXXXXXXXXMSKIPKVNKQLAEKLIEAKTKKNGEMEDEGTK---NPLGDDRFASMFTNKDFQVDMESEEYRLLHPVVSKQDKAARRK----------------------------QXXXXXXXXXXXXXXNHELWEQIKMTKRKERNALKASAIATGGVGKEKVKMYSLKEGVDDKMNGRAVEGKR--NKALGELLKEDTGRNIVEETGTALGSREITFTLEKEKR 1922
            M VS  N V +Y+LS GKSLPEW+SDRKKR L KKDVD+RRRIELIQDF+MPT  + ++VS DGQY+L +G YKPR++C+D  QLSLKF+RC DSE V F+ LSDD+SK+V L +DRY+EFH+Q G YY+TR+P+FGRD  YH PSCDLY VG  ++++RLNLEQGR++ P  T + E NVC IN  H L + GT++G+V C DPR+R+ VG LD   + V     +++ P ++AL+FNGAL M VGT+TG V+LYD+RS +P +VK+H Y LPIK++HF    + I++AD++I+K+W+  +G  FTS+EP   +ND+C+Y +SG++  ANE  K  +YYIP LG APRWCSFLDN+TEELEE+ E  VYDDYKFVT  +L++LGL HL G+  LRAYMHGFF+D+RLYHK K +V PFAYEEYRK+KI++KIEE RA R+++ K+PKVNK+LA KLIE + +K      +  K   N L DDRF  MF N DFQVD ESEE+RLL+P+VSK  +  ++K                            + + D++A          L +Q +  KR+ER       +        K + Y +K G + +    +   ++  NK L + LK +     +  + T +GS+++TFTL++ ++
Sbjct:    1 MQVSSLNEVKIYSLSCGKSLPEWLSDRKKRALQKKDVDVRRRIELIQDFEMPTVCTTIKVSKDGQYILATGTYKPRVRCYDTYQLSLKFERCLDSEVVTFEILSDDYSKIVFLHNDRYIEFHSQSGFYYKTRIPKFGRDFSYHYPSCDLYFVGASSEVYRLNLEQGRYLNPLQTDAAENNVCDINSVHGLFATGTIEGRVECWDPRTRNRVGLLDCALNSVTADSEINSLPTISALKFNGALTMAVGTTTGQVLLYDLRSDKPLLVKDHQYGLPIKSVHFQDSLDLILSADSRIVKMWNKNSGKIFTSLEPEHDLNDVCLYPNSGMLLTANETPKMGIYYIPVLGPAPRWCSFLDNLTEELEENPESTVYDDYKFVTKKDLENLGLTHLIGSPFLRAYMHGFFMDIRLYHKVKLMVNPFAYEEYRKDKIRQKIEETRAQRVQLKKLPKVNKELALKLIEEEEEKQKSTWKKKVKSLPNILTDDRFKVMFENPDFQVDEESEEFRLLNPLVSKISEKRKKKLRLLEQQELREKEEEEEPEGKPSDAESSESSDDEKAWVEEVRKQRRLLQQEEKVKRQERLKEDQQTVL-------KPQFYEIKAGEEFRSFKDSATKQKLMNKTLEDRLKIEAKNGTLSVSDTTVGSKQLTFTLKRSEQ 652
The following BLAST results are available for this feature:
BLAST of TCONS_00024244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NOL100.000e+049.32Nucleolar protein 10 OS=Homo sapiens GN=NOL10 PE=1... [more]
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