TCONS_00024278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024278
Unique NameTCONS_00024278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024278 ID=TCONS_00024278|Name=TCONS_00024278|organism=Clytia hemisphaerica|type=transcript|length=1517bp
AAAAGAATCAAGATTCCAAAAACAAACTATTTGTCAGGGATGAATTTCTG
ATTCAACTCCAGAAATTTACATCACAGATCACCAGAACAATCAAGCAAAT
TGAAGGTGATATCAAACTAGACATTCCAATGTATGCATGGAATTTGACCA
CTGATATTGCTGGTCAAGCGCGAGATCAACATTTGGTGTCGATGCTAGAA
GAAACCATCCATTCTTGGGAGATCACCATCGCTTCTGCAGTGGAGAGAGT
ACTCAAACGTCTACCACAGGGAAATGGACCATTAGCAGAAGTGGATTTCT
GGCGTGAACGAAACGCAACATTAAGTGCCATCTTTGAGCAGATGAATCTT
CCAGTTGTAGAGAGAGCTCTCCAAATTTTGGATTCTGTACATTCTGACAG
CCTGGCAAGCTTCAAATATCACCAGCATGAATTGACCAAATACTTCGTCG
AAGCAAAAGACAACGTTCGATTCTTATCCACCTTGGAGCGTCACTTCAAG
AATCTATCAATGGGAAACAGTTTCCAGAATGTTTTGGATACAATCCCATC
ACTAATGAATGCTTTACACATGGTTTGGATCATATCACGTCATTACAATA
AAGATGAACGAATGGTTCCATTGATGGAAAGGATTGCTTGGGAAGTTGCC
GAAAGAGTAGCCAGAGTAATCAACATCAAGAAAGTTCTAAGGGAACCGCC
GATTGTAATCAAGAAGAAAGCTGAAGATGCTAGAGGATCTCTTCACTCTT
GGAAAAGCTCCTATTTTGAAGTTCGGGCACGTATCGAAGCATCTGGTAGA
GACGCTAGATGGGAATTCGATAGGAAACGTTTGTTCGAAAGAACGGATTA
TATGGCGAAGATTTGTGAAGACATCAATGATATTGCTCAGGTTATGGAAG
AATTTCACAACATTTTTGGACCAGAATTGAAGTCAGTTACTGGTGATCCG
AAGAGAATCGATGATGTTTTAGCAAGAGTGGAAGCTCTTGTCATCCCTTT
CGAAAATgCTGCATTTGACCCTTTTAACATTCGTTACGCGAACAATTGGA
ACGCAGTTATGGATTGGTTCCGTAAGCAAGTGGTCAATATTGATAACGAA
GCTAAACACTTCATTGATGATTCTTTCAAAACATTGAGATCAGCTGAAGG
TGCTTTCGACATGTTACTCAAATTCAAACACATTCGCTCACGCGAGGCTA
TTAACAATCAAATGATGAGAAAATTCAATGACATTTTATTACAATTTGGT
AAAGAGGTTGATCAAGTATACGACATGTTCAAGGAACACGAAAGCGATCC
ACCCATTTGTAAGAACTATCCACCAGTTGCTGGTGCAATCCTTTGGGAAC
GTTCTCTCTTCTTCAGAATTAAAGCATCCATATTGAAATTTCAAGTCATG
GAAGATATGCTGAACAGCGAGACAGGGAAGTTGGTAACACGAAAGTACGT
TGCTGTAGCACGTATCATGAAAGCTTACGAAGAACAGAAATATACTGTAT
GGAGAGAACAAGTCAAN
Run BLAST on NCBI

transcript from alignment at sc0000486:110865..128320+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024278 ID=TCONS_00024278|Name=TCONS_00024278|organism=Clytia hemisphaerica|type=transcript|length=17456bp|location=Sequence derived from alignment at sc0000486:110865..128320+ (Clytia hemisphaerica)
AAAAGAATCAAGATTCCAAAAACAAACTATTTGTCAGGGATGAATTTCTG
ATTCAACTCCAGAAATTTACATCACAGATCACCAGAACAATCAAGCAAAT
TGAAGGTATGACTATTTCAAAAGGTTGACTTATTTATGAAAACACTTATG
AATAGCCAGATTCAAATTTTTGGCCCATCATTGGACCTTTTCATTAGCTT
GTTGCTTACGGTGCTGTTGCAAGTCTATTTTTGAAGATGCAAGGATTtgt
caagttcattttggaagaaacaacGCCTTGTAATAATCAGTACTGAAAAC
CAATTTGTCGCTGGGCCTGTATGTCCTATCGTCATTCTGCCTCTCACAAT
TTatctaccttattacacgaatattactaggcaagtattcaacagCCTTG
AAATaaacacgcaaaaaaatttatttgctttttcaaggacaccacggctg
gttttaattaagggggttattattaacacaaaatttttcaattcgtgtta
ataaaatgactagtaatattcatgcaataaggtatatattttaaccaatc
aattcaattttaatttgtcTTGACAAATGGcacagatttttttaatttta
acaagTGAATGAAAAATTTCTCTTTATTACTATACCATTTTTATCAGAGA
GAATATTTCAGGTGCTTTACAAGGGTAGTATCAGAGATAGTATCCAGCTA
AtgtgcttagaaaaatcactGATCTTTTCCATTATACTTTTAAGATTGTT
CCTCTACCAGCTTTACATgtaataaatttctttaaagatgaTATTTCCCT
AAAGATTTTCTCTAAGCGATTTTTTTTGTAGATTGCACTTGTGGCTTAGT
TATGTTGTTGCTaaacaagattttgaaaatatactttCGTTGTTCCAATT
CAGGTGATATCAAACTAGACATTCCAATGTATGCATGGAATTTGACCACT
GATATTGCTGGTCAAGCGCGAGATCAACATTTGGTGTCGATGCTAGAAGA
AACCATCCATTCTTGGGAGGTAAAGCCTGGTTTGCACATAAGGGCATATT
ACTTTTTATGTTGTTGTTGAAAATTAGGTATTAGTTCAAGATCATTCCTA
CATAGATCCTTTCACAGTCAAAAGGAAATCATTATTAATCAGAACCAAAG
GGCTCTGATAATGACTTTCAGATGGTCTAAAATTTTGGACGTTTTTGCCT
CTAGCCAATGGGAGTCGCAATCAGTCTTGATTACCAATGATTCATTTTGT
TCTTGAAAAGGCCTATTGACAtggcgtcctccagctttttggtcccccct
aataagagctaaaatcccccatctggccttttccccccacctgtctttaa
aattcgtgCTCCCCCCGattgggaaatccccctagccgtattgtataagg
gttacgaagtgatgatccagacttgcctcaattcgcaagctactatagca
aaaaaagactctcaaaatccctagaaagacaggctcataagcctgaatgc
ccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNctaggtagaggactgaatataccccctattcgccttt
ccccccccatcaagcttgaaaatttcacttcccccctggcaccaaaatct
gattcccccccatcttcctgggggggggggatgatcccatgaTTGAGGGG
AATTTATATAGGTTAGAGAAAGCAGAGACAGTTAGTCTTACGCAAAGAGT
ACCCTCCTTTTCCTATCATTTCAAAATcacaaattgaatttttttttaac
ctgCTGAATTTTTGACATTGTATGACTGGTATTGTAGAACTACCTTGtaa
tcttttttaatgattgatATGTGCCTTTGAAGAATTTGTTAAATTAAAAG
TATTTCagaaacaaatttgaaattaaagtctattcaaattagctggcagt
gtttttttcaaatctcgataacttttgataaaatttgtttcctgtcaatt
tttttgcaaagattttcGTCTCAATAAAACAGACCTTAACGAAGTAGAAA
TTTCGTGAAATTTTATAAGGGCTATACAAAATTCCGTTTAGACTTAACAA
AACTCAGCACTATAATAatataatagaccttatcggagtttttgattttt
ctaaaaaagcgatgcattgtgggattgtttcgagtgtattacaatagaat
tccctggAGGACTTCCTcggagatttctattgtaatacactcgaaacaat
cccacaatgcatcagtTATTTAGAAAGATCAAAAACTACGATAAGGTCTa
tttatatttaattttcagATCACCATCGCTTCTGCAGTGGAGAGAGTACT
CAAACGTCTACCACAGGGAAATGGACCATTAGCAGAAGTGGATTTCTGGC
GTGAACGAAACGCAACATTAAGTGCCATCTTTGAGCAGATGAATCTTCCA
GTTGTAGAGAGAGCTCTCCAAATTTTGGATTCTGTACATTCTGACAGCCT
GGCAAGCTTCAAATATCACCAGTAAGtttaaaaaacaatatttttctaaa
gttttattttttgttgattcaGAATTACTTTTTAGTTCTATCTTTGATTA
CATATTTTACGTTGATAGTCAATTATAAGGAcattttagacagtctttcg
atcgTTTTCACGAGGTCCACGGCCTGCACgttcggctatctatgaactga
acgggaCAATGGAAGGAACGGAGATTTGACCTGGAAACCCCTGGATTGAG
GCGCTGACTCCTTGACCTCCTGGCCACCACCCCTTAAAATTACACATTAC
ATCACAAAACTAATTGTTCAGCATCAAGTTTTACTTGTAAATGTAATGTA
ATAAATGTAATATTAAACGTGTATCATGTATCAACATTCCATATAAATTT
TCTCAACTGTTTATACTACCTTTATAATTCCATTAATTTTCGCGCCCTTT
TTATTTTTGCGCAGAATAGGTGCGCGAAAATAAAAGGCGCGTGAAACAGG
CCTATTTTCGTGCACTTGGCTGCGCAAAAATTAAAGGGTGCGCGAATTAG
TAATCGTTCTGATAGTGTAAAAATCTCTTCTAGGGCTCTTTTAATAAAAT
GGGACCTCGATCCATGTTAAATTGCCTCTGGATGTAAAATCTAGCTGAAC
TGCACACTTAAAATGAGTAAAACTTCCGATTTCACGGGTTTCTTTGGCCT
CTTTACCTATAGTCATTACAAGATGTGCGAAAATTAAAAGGTGCGCGAAT
ATCTTTTTTACGAGTTGCGCGAAAATTAGAGGCGCAAAAATCAAAAGGCG
TGCGAAAATTAATGGAATTAAGGTATGgactttttagacattttagaCCT
TGGTAAACCAATTGACCacaagaaaatctttttgaacctctgcttttttt
tggaaagttcgAAAAATCTGAAGTCCCAGCAGAAACCAGGAGGACGTGCT
TTTTTATATTCATAAAGTCCATTTGCTTACTAAATgcatgtgcaaaattt
caaataatgtttattttttgtttctcaAGGCATGAATTGACCAAATACTT
CGTCGAAGCAAAAGACAACGTTCGATTCTTATCCACCTTGGAGCGTCACT
TCAAGAATCTATCAATGGGAAACAGTTTCCAGAATGTTTTGGATACAATC
CCATCACTAATGAATGCTTTACACATGGTTTGGATCATATCACGTCATTA
CAATAAAGATGAACGAATGGTTCCATTGATGGAAAGGATTGCTTGGGAAG
TTGCCGAAAGAGTAGCCAGAGTAATCAACATCAAGAAAGTTCTAAGGTTC
GAATTCCTTTTTGTCTTACTTATTCTTATTATTCGAAATATCAGAGtagt
aaaaagttttgaaggcacctgaaatgggcttttccagaataAAATTTTAC
CctcactgttgaggatattgatttttccaaATATCGAACCCGCTGGATAT
CTGTTAGCCTTGTGAGCTAACAAAATGTTGCTCTAGGGGGTGTGATAAAT
GTAAGAATTTGTAACTACGGTTTTCTTATGTCTTTACTCTATGAACTCCG
ATATACTCTATTTCCAATATATTCCCTAGATCAAATTATCTCTAGGACCT
GATAGCTATATCAACAACCTTGCGCATAATGATGCCCAAGGTGTGTTGAT
ATTCGCTAGCATAGCTAACAGTATCCAcccttaaaaatatgctcaacccc
ctggatatccttctcttataaagatgcttaccctggatatcgtatttttt
acttgaaaagacactttaccccctcgatacccgctcccttgtagatattt
aaccccctgggtATCCACTTTTTAACAAAAGTCGTTGACTCGTTAAGtcg
atatccgatatcctcaacaggggggcatggactatttctggaaaagccca
atcttgAAAGTTTAAAATGCTCCTCGGTGTTGTTTATTTTTAACATCGTT
TAACTGGACATCACCAGTAAACCATCCTGAAGCTATCATACTGTTATAAC
TATTATATTGAAGTATATTATGTATACTACAATAGTCTGTTAGACTCAAA
CCTCTCAATTACTCGATGATCTTCTTTAAACTNAACTGAACATCACCAGT
AAACCATCCTGAAGCTATCATACTGTTATAACTAATATATTGAAGTATAT
TATGTATACTACAATGGAGTCTGTTAAACTCAAACCTCTCAATTACTCGA
TGATCTtcttttaactcgaacaagttccCCGCATGCGTGTTGGATGACTT
CTGGAGACTACTGAATTAAAATGTATACCAATCTTCAATACTTCTCTTTG
ATAACAGGGAACCGCCGATTGTAATCAAGAAGAAAGCTGAAGATGCTAGA
GGATCTCTTCACTCTTGGAAAAGCTCCTATTTTGAAGTTCGGGCACGTAT
CGAAGCATCTGGTAGAGACGCTAGATGGGAATTCGATAGGAAACGTTTGT
TCGAAAGAACGGATTATATGGCGAAGATTTGTGAAGACATCAATGATATT
GCTCAGGTTTGTAACAGTATGTAGTTACAGTAAGTCTTACGACTGCAGTA
AGAGGAGACCGAAAgctcctcttttgatagctatcCACTCTAAAGGGAGg
gaagggcgccactctttctccctttATTGCGCCGCTTACCCTTGACCTAG
TGCACCATAGCtgaatgctctaccttcatgttACATATACTTGACCTTGT
ACAACTTCACTTTTTCAAATTGGTACCTGGATGATGTTCAAATACTACTA
ACGTCTCAGATTCTCACTGAAGCAAAGTATCTCTTTAGTTTTTTAGCATC
GTCATAAAATCTGGGGTTAAGAGGGATTAATTATTACAAGTATTCTGATT
TATGTAATGGCTCATTGCAAAAAAAGGGTTCATTTTGTATACACATTCTT
AAAaaatatatggtgaagatcagagatctgacctcaaggagagcaagtgt
ggaaaatactaaataatgtttttataattatacgtttttttgaattcttt
tgaatttttctaaatgtataaatcaaaccaatcaaacattctgtcaagaa
atgagaattttaatgcgaaaaagaaccaacaaactaATAGACATAAAGTG
TAAAGAGCCAAGTagaaacacaaacaccaaaaaccactcaaaaactaaca
aaaatgtgatgcaatctggagtccccgacttgcgacaggcgcagcgactt
taaacatgtttttataTTATCTCCACCAGGTTATGGAAGAATTTCACAAC
ATTTTTGGACCAGAATTGAAGTCAGTTACTGGTGATCCGAAGAGAATCGA
TGATGTTTTAGCAAGAGTGGAAGCTCTTGTCATCCCTTTCGAAAATGTAT
GTCATCTTTTATAGTTCTGTCAATAAAACGGTAATTAATAGCCAggaaat
ttacaattttcagACATAAATAGCAAATAGTTCATTTTTATCACCATGtt
ttttttactgaaaaaaCTTGGAAATGTATTACTTTAAGTGCAGAAAGTTT
CGCGGACAGAAAGTTTCGCAACTAgtcaaaaaatcgcgaaatttagcaaa
tttaagtttcgcgaattatggttttaccgaaatttcacagatagaactct
cgcgaattcatataaaatttaccttttttggttacaaaaactcataaacc
acgcaaaatttagcaaacagtgcaaaactgagtaggaaaatttatttttc
ccgaaaaaaaacattggcgtttttcaggtttaatCTCTTATctagcagaa
acttttgcgaagaaggatcaaaatcgcgaaaaaacgcgaaagtttctgcc
cttataGTACAAAGAAATTTATTCAGTCACAAGAATACAGCACAAAGTTG
ATTGCTAAAACTGACTCCCTAGGACAGTAAAACATATCTCTCCTGATACA
CTTATATGAAGTTTTAGATACTTGAATACGGAATTGAGATTTATTGTAAG
ATTTGTTACCTAGAGATGTCAAAATTCAGAAATCAAGGGCCAGGTAATAA
AAGCGTATTCTGGATCTTTTACTTTGataatttgttttcaataagCTGGA
TCTTTTTCAATTTACGCAATATTGTACTTGCTTACATATCAGGATATTCT
GAATATGCGTAattcaagatgacgtcatatttgtTAACGGAGGCAGCCGC
aaaaaagccggattttgaccaccgtgtttctattttttactAACAGACAG
GGGTCAACCATAACATGGCACAACATGAATCAGATTGATTCTTCTTCATG
AATCAGATTGATTCTTCTTGGCACCCATAATAGAATATgagataaaattt
caaaacctttttccatcatttttcaaacattttaggCTGCATTTGACCAT
TTTGACATTCGTTATGAAAATAATTATGAGCTAAAATTTCAAGACCATTT
TCcatcatttttcaaacattttaggCTGCATTTGACCCTTTTAACATTTG
TTATGAAAATAATTATGAGCTAAAATTTCAAGACCATTTTCcatcatttt
tcaaacattttaggCTGCATTTGACCCTTTTAACATTCGTTATGAAAATA
ATTATGAGATAAAATTTCAAGACCATTTTCCAtcacttttcaaacatttt
aggCTGCTTTTGACCCTTTTAACATTCGTTACGCGAACAATTGGAACGCA
GTTATGGATTGGTTCCGTAAGCAAGTGGTCAATATTGATAACGAAGCTAA
ACACTTCATTGATGATTCTTTCAAAACATTGAGATCAGCTGAAGGTGCTT
TCGACATGTTACTCAAATTCAAACACATTCGCTCACGCGAGGCTATTAAC
AATCAAATGATGAGAAAATTCAATGACATTTTATTACAATTTGGTAAAGA
GGTCAGTATACAGTCcgactctctctctaattcgacgtttcTTCGTAGta
tagaaagattcggattACGGATCAGTTTTAATAATTCTTTCCAACTACGG
GAACTTTTAGtttcgaattacaaaaagattcgaatgataGCGATTTGAAT
TGGAGTAAGTTAACAATGTAGCTTTTCAAATAtcatttaaattaaatttt
tatatcagaataatttttcatttttaaaaggtTGAATATTCCCACTTTCA
AGTGAGAATTGGTTTTCATCGGTGTCTTTATGTAATGAAAGAGATGatgc
ttttaattcaatttgaacaacAGAATCAGAAAGAGCAATGATTTTTAATA
CGAATTCATGtctaaaacatgaaatttggtcaatttgttccaaaattaac
gaggttttcaagttttgcctggaaaagcttgtgatgacatcatcacaaaa
ctttcaaccttcataacttttgataggaagattttcaaagcatgttttat
acctcagtTTTCATCAgcttttcatgctctttccgttGAAACAAtgagat
tttgaatattttcaaaaaaataaattttcgcccagccacctgatgacgtc
atctggcaggtggccatgTGGCAAAATTTAGTggtactgtttaaaattaa
gttttagaccctctaaggatcatctgtgccacaTTCCATGCTTTTATAAC
CATCTAAAGTATTCTTACGCTCTTatgcagggctcgaaataacgatattt
AGGTGGTCGGACACATTGTCCGATCAAAActtgatttgggtcggacatgt
cctaaggcttttaaagtaaaatgggtcggacatgtccgattgatttttat
gtggggTATATTTCAAGTTTAATACaagcttctgatagaatttttcattg
atcacgaagaagctaaacaaatgccaattaatggtcagaagcccatgatt
tttacttgaagcatgctttcatttgttgagaaaaagcatCACACAAANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTAATGATCGcaactttg
agagtttttgtgtgtaaataaagaagttactaattctatgtaaattataa
tttcttttggaaatttcacaacgcatctgacaatttttttgaaggcaccg
aaagtaattgggtcggacatgatgtccgactagaatcgatttgggtcgga
catttcaggaattgggtcggacaatgtccgatgtccgaccgttatttcga
gccctgtaacttatgtgctaacagacctcactatgaCCCTGTTTGCTGAC
TTTGATTGTGGGCTAGAAGTTTGAATGCAAGCACAAAACCTAATTTTTCT
CGACCAATCTTCCCAATGACTCTGTTTTTTTTGACTAACGCTTGCCGATG
TAAAATTTCGGGCATGTAAAGCTGGAGCATTATGTTCGGTATTTTTATAA
TATCGAGTCTGGTTTTCGAGTAAACTGGACaagcctctataactcgaatg
tctcatTAACGTGAACAATTTTTCCGGTTGCATTTAGCACTATCTAATaa
accttataaaccttactccatatctcaaaatttccataactcgaacaaat
ttgtctTCCCTGtgcatgttcgagttatggaaactcaGTTTCGGTACAAG
TTTTAGAAAATtcaattaccttatcggccctttttacgccggcccttatt
ggcgttatttttgggcttgtggcgtaataagggccggcgtaaaaagtgCC
GGCGTtgaattagggccggcgtaaaaagggccgataaggtatttttgaaa
caatttctaATTAGTTCTTTTACCGTATTATCTTTAAGGTTGATCAAGTA
TACGACATGTTCAAGGAACACGAAAGCGATCCACCCATTTGTAAGAACTA
TCCACCAGTTGCTGGTGCAATCCTTTGGGAACGTTCTCTCTTCTTCAGAA
TTAAAGCATCCATATTGAAATTTCAAGTCATGGAAGATATGCTGAACAGC
GAGACAGGGAAGTTGGTAAGTCCCTTAGTTTTTAGAGTCTGCTTATCTTA
AtttaatttatagaagtgtatttctcaggtcNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNttctttcgatgttttttcttttgctt
tatgaTGCCATTGCTTTATTATCTCGCgttctttccttgaaaaatcgtct
gaCACTCTGAAATCATCTTTATCTAGTTTTTGGGCTGAAGCAAGTATTCT
AATCCTTTCTTCTTCACTCTCGAGAGTAACTTTTAATGGTCTCCATCGTT
CATTTGTATACATTTCATCTTTACGAGCACCTATGCGTTCTACCTTGATT
ATCTTGGACTTCTAGGCaatcttttgtttgttttcacggGATCAAGTGCC
AGCTGGCTCAACTATCTAAGAattgaacggaacattggaaggagcgagGA
ATCGAACCATGAACCCTAGTTTGAGGTCTTGgcgttctttttgtttttat
tttgtttgacgGCTTGCACAAATTCTTAACTTGCTTGCCATTTTTTGCGG
TTGCAATATTActtacttaagggctctgaccatagtgaatttttaatatt
tgccacttacaaaatataaagttctacttgatgtaggccacaaaactgtg
gcatgttatacattttctgttaggccaattatccgtgggtctgaaaattt
aagaatcgcaatgaaaaaattcgatgaagaagaaaatgaagacttttgcg
aagaagagtattacaactttgaagagcttattttcggcgaagaaaaaaca
ttttgaatattttttttgcggtagatggtgtatctttttaacattatttt
ttcggaaaatttttctaaaatcttatttgcttcaaaatcttgaaaataat
gCTTTTTGACCTATTTTCCattccaatttttcatagaaaaacagccataa
cttttgatgcattaatttagaaaatttttccgaaaaatttaagagttcaa
ttctttgcagacagtttaaaaaaaatttgaaacaaaaaggttaattatcc
attaaaacaaaaaggttaattatccattaaaacttagcattttttataaa
agaaggtaatgcaacatattattaacatctttttaaagttcataacgtca
tttttgcaattaaatttttaattactcttaagaTAGTTAGTTGAttataa
aaagcaatttataaaggcaattctttgttaaaagtgttaaagactctaaa
atataacttttatgttcaactactaaagtcaattttccaactatggtcag
agcccttaattagATATATCAGAAATAAAGTATATCAATTCCTTTGCATC
GTTACTGAAACTGTATTGcaataaaagaacaaaatactaTTGACTATAAA
ATCATAAGATTTGACAAAATTAATGTTGCGAatcaaaaaatgtaaagaaa
attGAGGTAATAATTCCAAATGATGATTTTAATGACCTGGGATTTTTAGT
TTTCGCCccagtttgaaattttaagattgtGGCTCAACTTCTTCAATCAA
AATGCGAAATGTTAACGCATAGTAGGCGTCTCCACGTTCATTAACATTCC
GGTTTACACAGTCCGCATTATTCAGTCCAACTCTGACCAAACCACTTTTG
TTGACTTTACAAAGGCCATTCAAAGTGAGTGGAATAAAATCTCTGTTGGG
TTCTTCTCTGTGAAGTGCGTGGTCGATTGGAACCGGGGTGCATTCGTTTC
CATCAAAAGTGACGAACCAGCGCTTGCAAGTTCCATGCGTGCGAATTGTT
GTGGACACTGTGACCAAAAGCTCCGAAGAAGCCACTCTCTTTTGGATACT
GCAATCCTAAGAAAAAGAACGTTCAAAATGGATAAGATCAGGGATTTTTT
CCAAGCACTTAGAGCTGGGGTCGTTTTAGTAATATGCCTGAAAGGGCATC
TGCTCAGCGAAGCTATGCATTGCTAAAGCTGTGACTATCGAAGGCGATTT
AAAAGGCCCCCAGAAGTTCCATAGCAAACCCTGGTGGGGGTTCAGAGGGC
GAAGCTATAAGAagtaagaagaaaaaatgataaaaatttataaaatttta
ctagaaaatatttttctatttttgattgAGTATTTTGGATGGTATACGGA
CAtacaaaaagtagaaaaatccctgaaaaTGGTTTGAGACTAGAGTCTAT
CTCTTAGGATTTGAAGCCATGGTTTCCTAACGTGTGGTTTTCATACAATA
TCTGACTTGGAAgctacaaaatataaaaaagtctatggggtttttgcaaa
aaaatgattttaagatttttcttcgAGATTAGATTTCGCGATAATGGTCG
GAATCAGCGAAAATCGCAGAATTTAATCCACTTCTCATTACCCTGATCAA
TCCATCGTTAGTTTGGTCATAATCACTTATTACAGTGCTGGTGAGTCTTT
TCCAAGCGCATTGTTTAATATTTCTTATTGCGGTTGCATCTTTTCCATTG
ATACCATTTTTTCCATTCTTCCCTGGCTTTCCATCTGCGCCATCTTTTCC
GGTTAAACCCTGGCTTCCGTTTTTCCCTGGCTTTCCATTAATTCCGTTTT
TACCGTCTGTTCCTGGCAATCCATTTACTCCAGCTATATTTATAAAATGG
AGATGAATAATTTGACTGAGGTGATTCTGTACTGCTTCGTCTGTTTCAGA
CAATACTTTTCTTAAGAGTTTTTTACCGGTGAAATTTGGTTTATTCTGTA
AGACTCAATAAGATTTACACTGATACTGTTCTAGACTAACCTTGTCCTTT
GGGCCCCACAGCGCCAGGGCAACCATCTCTGCCGTCGTGGCCAGGGTGTC
CTGGGTGACCGTCTCTTCCGTCACGGACTCCATGGCAAACTCCACCATAT
CAAGCTCCACCAGTTGAAGGCTTAAAATGAAATACGAAAGTTCAAATTAC
AAGATTTGTATATTGGAGAGAACTAAAGAGCATAGTCGTCTTGATACTTA
TATGTACACAACACGTTTCTTCAAGAACGAATGTAATAAAGCTCGAGCAA
ATACACGttgttttaccaagcagcctcaatgtttcttaagaaatcggcct
taattttttttttaatgattctaaactttttgacataatcagtctatttt
tcatgcaagaaaaaaaaacatttgttttgattggaaggttctttaaaaaa
aaaacgaattaaaaaaatttattctctcattctcagcctcagcatgtttc
ttagatgttccttagtttttaggcattctgagccttgtgtttcttaaaaa
taaaacgtgtatttttatttttgtacctttGAAGCTTGGGAGTAATTGTC
TATCATCTCATCTATCGTGAATTCTTGTTCGAATTCGTTCTTATCTGCAT
TTTCACCAACGATGAATTTATTACAAAAAAGCAATAATAAAACCACGGTC
ACAGCAATCATTATTCTTGCCATCTTTGTTTGCGATGAAGTCTTCTTTAT
TGAGTTGTTGTCAAAAGACTGATTCATTTCGGCAAAATAACTCCTATTTA
AGCGTGCGTGTTTACAGACAGAAGCTTTGTCACCTACATGTAACGTCGTG
ACAACCTTCATAACATGACGTTTATATTACATTAGATGAATGTTCAAAAT
ATGTTGTATATTGTCGTGCGCTAACCGTATGAGCTCTATATTAAGACAGC
TCTTACGCAAACGTAACCACGGGGATTTAACACACATTagaattttataa
atttagtaCTTATTTAAACATTTCCATGGGGATTTAGTAAACATTATAAT
TTCACAAATTTAGTACTTATTTATCTAAACATAACCATGGAGAATTAGCA
TACATTGAGCTCCTCTAAAAACGTCACTACCTTACCATTTCGAAATGACA
CGAAACGACCAGCCTTAACACAATGGCTTTTGTTTCGACGCAGCGAAGAC
AGATTTTAGGGCGTTGAAATATACTGTTCTACCGTTAAGATTATCTTCGA
TAACCATATTTGGAATTACGTCTATTATAACGTAAGTTTTCGGTtaaatt
tatctcaaaaataCTGACTCGCGACAATATCAACTGGATGTTCTTAGTAA
TTAGCATTtccaaaatggaaattttttttttcaatttttttttcttcaaa
tttcatccaaaatttttctttagaagAAAATCTATTCAAAAAGTCAATTG
TCTTTAATGTTTGCtcaattctcaacttcagttgagctacaatctgacaa
tgtctgtgtgtctgtctgtgtgtctgtctgtgtgtctgtctgtctgtcac
aaaaactttagggcagcctggagactttaaaaatgcttggatttggctga
aatttggcacacttgttccttgggtgaatatctgtgggagattttttcat
tttttaaaaattttgatttttggggcttggggacgagtttttcgccaaaa
cgaggcttaaactttggggcagcctggagacttcaaatattgtttgattt
ggctgaaattttgcacacttgttccttgggtgaatatctggggtttattt
tttcatttttcaaaacttttgattttttgggcctggggacgagtttttcg
ccaaaacgaggctaaaacctttgggcagcctggagactttaaaaatgctt
ggatttggcttaaatttggcacacttattCCTTTGATGAATATcttgggg
tctacaattgggcctataaaTAACTAAGCTACTGAaattgagcccagtgc
gttgcgcacgttcgactattcaTAAAACAGCATTGTTTAAAAGtaccaat
ttttgagaaaaatgcgtTAATGCTggaattttcatttgattttttcctta
tatatttcgttgttttttcacacaaaaacattattgataacaatgtccac
aatcaagcatgattcaattgtcaataaaattgatgtttgaagccggaact
ttctaaaaaccGCCAGAACAGCCGATAATTGCCGGTAAAacgatttttct
tgaatttcccTAGCTGTACTATATATTCTTTCATTAAATTTGCTTGGATT
TTGTAAGTAGTTAGTCGAAATTGTTTACGGTTGAGGTTTGGAAGATgtcg
gttgaagtttgaaagttGTCGGTTGAAGTTGGAAGGTTGTCGGTTGAAGT
TGGAAGGTTGACggttgaagtttgaaagttGTCGTTTGAAGTTTGAAAGT
TGTCGGCTGAAGATTGAAATTTGTCGGTTGAAGTTGGAAGTTGTCGGTTG
AAGCTGTAAGTTgtcggttgaagtttgaaagttGTCGGCTGAAGTTTGAA
AGTTTTCAGCTGAAGTTTGAAAGCTGTCGGTGGGTTCAGTTAGATCTCTT
TGCGCCTAAATCTCATTAGTTGTTCAGCTGTttcttgttgttgctgttgt
tatTTCTTGTCCAGTTCTAATAGTCGAGATGGCAACTGTTCTTCCAAACT
TCTTGAAAACTAAACAGAGTTTGATGggattgatttgaaaaatgttcttc
gTAGGCTTGAGGGAATATGATTTTCAGTTCATTTTGAATTGTCAAATATC
GACATTTtaaactttcaatttcattaGTCAGagatttgatttcaaattta
aatctcttctacacgttttttttattagaacccagtttataagaacattt
aggctgaaattcgtcgaaaaattataaacatcgtaagaacatgcccagcc
tcagtttggaaagaaatgacaagaaactacaattttttcctcttttcaag
cagttttaaccgaacttagggatggattttctaaaatcgagagtcaaata
ttgtccaaattttaccaattttaagtctTTATTttacatgatattgtcga
tttagagttgtctgaaaaattaagaacttgtttaagaacatttttaagct
gaaaataaaaatgttattatgaaaacgtttgaaaattcgttaaaaaaaag
tctattggccaaaattgatattttcaatttttgcttgTCGAAGGTTGGAG
CTTGGGGTACGCCCAGCCAGCacattacaggcaaaattttaaaatattaa
cTTTGGCTAATAGACTtcttgaaaaggattttcagactttttcgtaacaa
tattttatgttcactgaaagatattctttccaaaaaagcaaaaattttga
atttagaaaatttttatttttcgatgacgtcatcgtttcatgacgtcatt
ttgccttatttccttaatatctcctgatatattcattttcagatataggt
tgtgacctttttctttatcagtttttcatgctctttcgaatggaacaaaa
gcttttcaattttgacgactttttactttggttgccatagtaaccaatga
cgtcagtttccatggcaacgggtggtcacacccggccccacctctcaaat
tttgatcttctacattcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgatc
ttctacattcaaggaacaatattcaatcataaaatccctttgcacaagct
gctgcacacgggaagctttttcgcgacatagtggcccctactaCTACTTT
TTTCTCCAATTGTTTAACAATGAATTTGGCCAAAAGCAACTGAATGAAGA
TGTGTGATGATGTGGTTTTGAAGTTTGATATATATAAACAAAAAGCAAAG
TGGATAAATATAAACATagttgacaaaattgataaataaataaataaata
aatttctatgcataaattatcaaaaataaacttGAATTGGGATTTATATT
TGCAGAACTCAAAAACTACTGAAAGCAAAGTGGACATGCAATAAAATGAG
AGATAAAGTGAACCATCCTATCAAAGGAACTGGCCTAAAATATAAATATC
CTAGGAAATCACTACgctgaaaaataatgaaaagactagaaaaaattaaa
aaaataattttttgcagtCCTGAGAGTCAATTTTGCCCCATGCAACATTA
ACTAGTCAGTTCTATGCGATAAGTTACTGGCAGTTGAAaataggtgtggc
gctccacaaTCCAGCATTCGAGCTCTTAGCTCTAGGGTGAATAGAAAAAG
GGGTAGACTCCCTCAATTTTGGCTCCAACGACAGCCACCAAATAAATATA
CTTACGGACTGTCGGCAAAAAATGAACCATTTAGACCGTAATAAACAGTC
AAAATTCAGAGAgacaaaattgctaaaaaagtgACCCATAGAgagacatt
ttcataaattttcttccaattttcaaaagaattctccaatatttttgaaa
atttttcttactttcttgAATTTTCACTCTTCTTTGACTCGAATTtgtga
aaaacccgacctttTGAGTTACTTTGTAAGGAGAAAAGAGCGACCCGTAC
CGGTCCGCGTCTACCCAGCACCCGTTTTTGCCCAAGTACCCCCGGGCTTT
ACAGTAAAAGATTGTTTTGACTTGATTGATTTGACTTTTTCACTTTAATT
CTACAATATATCTGCATTTAAGGTAACACGAAAGTACGTTGCTGTAGCAC
GTATCATGAAAGCTTACGAAGAACAGAAATATACTGTATGGAGAGAACAA
GTCAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013627XLOC_013627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024278-exon-sc0000486-1491911889:110865..110969TCONS_00024278-exon-sc0000486-1491911889:110865..110969Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:110865..110969TCONS_00024278-exon-sc0000486-1510915933:110865..110969Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:110865..110969TCONS_00024278-exon-sc0000486-1575043694:110865..110969Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:111768..111883TCONS_00024278-exon-sc0000486-1491911889:111768..111883Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:111768..111883TCONS_00024278-exon-sc0000486-1510915933:111768..111883Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:111768..111883TCONS_00024278-exon-sc0000486-1575043694:111768..111883Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:113283..113485TCONS_00024278-exon-sc0000486-1491911889:113283..113485Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:113283..113485TCONS_00024278-exon-sc0000486-1510915933:113283..113485Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:113283..113485TCONS_00024278-exon-sc0000486-1575043694:113283..113485Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:114494..114760TCONS_00024278-exon-sc0000486-1491911889:114494..114760Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:114494..114760TCONS_00024278-exon-sc0000486-1510915933:114494..114760Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:114494..114760TCONS_00024278-exon-sc0000486-1575043694:114494..114760Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:115772..115970TCONS_00024278-exon-sc0000486-1491911889:115772..115970Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:115772..115970TCONS_00024278-exon-sc0000486-1510915933:115772..115970Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:115772..115970TCONS_00024278-exon-sc0000486-1575043694:115772..115970Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:116694..116810TCONS_00024278-exon-sc0000486-1491911889:116694..116810Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:116694..116810TCONS_00024278-exon-sc0000486-1510915933:116694..116810Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:116694..116810TCONS_00024278-exon-sc0000486-1575043694:116694..116810Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:117889..117909TCONS_00024278-exon-sc0000486-1491911889:117889..117909Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:117889..117909TCONS_00024278-exon-sc0000486-1510915933:117889..117909Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:117889..117909TCONS_00024278-exon-sc0000486-1575043694:117889..117909Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:118088..118315TCONS_00024278-exon-sc0000486-1491911889:118088..118315Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:118088..118315TCONS_00024278-exon-sc0000486-1510915933:118088..118315Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:118088..118315TCONS_00024278-exon-sc0000486-1575043694:118088..118315Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:120253..120429TCONS_00024278-exon-sc0000486-1491911889:120253..120429Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:120253..120429TCONS_00024278-exon-sc0000486-1510915933:120253..120429Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:120253..120429TCONS_00024278-exon-sc0000486-1575043694:120253..120429Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1491911889:128237..128320TCONS_00024278-exon-sc0000486-1491911889:128237..128320Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1510915933:128237..128320TCONS_00024278-exon-sc0000486-1510915933:128237..128320Clytia hemisphaericaexon
TCONS_00024278-exon-sc0000486-1575043694:128237..128320TCONS_00024278-exon-sc0000486-1575043694:128237..128320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000486supercontigsc0000486:110865..128320 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.487945	0	0	0	0	0	0	0.201966	0	1.24559	0	0.45736	0	0	8.30474e-06	0.00376098	0	0.246114	0	0	0	0	0	0.587062	0	0	4.94985e-08	0.130628
Blast
[Close]
BLAST of TCONS_00024278 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4)

HSP 1 Score: 474.552 bits (1220), Expect = 2.072e-148
Identity = 242/493 (49.09%), Postives = 330/493 (66.94%), Query Frame = 3 
Query:   30 FVRDEFLIQLQKFTSQITRTIKQIEGDIKLDIPMYAWNLTTDIAGQARDQHLVSMLEETIHSWEITIASAVERVLKRLPQGNGPLAEVDFWRERNATLSAIFEQMNLPVVERALQILDSVHSDSLASFKYHQHELTKYFVEAKDNVRFLSTLERHFKNLSMGNSFQNVLDTIPSLMNALHMVWIISRHYNKDERMVPLMERIAWEVAERVARVINIKKVLREPPIVIKKKAEDARGSLHSWKSSYFEVRARIEASGRDARWEFDRKRLFERTDYMAKICEDINDIAQVMEEFHNIFGPELKSVTGDPKRIDDVLARVEALVIPFENAAFDPFNIRYANNWNAVMDWFRKQVVNIDNEAKHFIDDSFKTLRSAEGAFDMLLKFKHIRSREAINNQMMRKFNDILLQFGKEVDQVYDMFKEHESDPPICKNYPPVAGAILWERSLFFRIKASILKFQVMEDMLNSETGKLVTRKYVAVARIMKAYEEQKYTVWRE 1508
             +RDEFL+ +QKF S I RT++Q+EG+IKL++P+ +  +  +++  A D   V +LE+ + +W   I++AVE  LK+ PQG GPLAE++FWRERNATLSA+ EQ  LP+V + L ++    S  +A+ +    EL K+  EA DNVRFLST+ER+FKN++ G+ F  VLDTIP++M+AL MVWIISRHYNKDERM+PLMERIAWE+AERV RV+N++ + +E     + K  +AR +L  WK +YF+ RA+IEASGR+ RWEFDRKRLFERTDYMA IC+D++D+ Q++EEF+NIFGPELK+VTGDPKRIDDVL RV+ LV P EN  FDPF+I+ +  W  VMD F+ +V+ ID   K F+ +                          + N                      ++K H   PP       VAGAI WERSLFFRIK +IL+FQ ++++L+S+ G+ V +KY+ V R MK YE++KY  W E
Sbjct:  195 LIRDEFLMNVQKFASNIQRTMQQLEGEIKLEMPIIS--VEGEVSDLAADPETVDILEQCVINWLNQISTAVEAQLKKTPQGKGPLAEIEFWRERNATLSALHEQTKLPIVRKVLDVIKESDSMLVANLQPVFTELFKFHTEASDNVRFLSTVERYFKNITHGSGFHVVLDTIPAMMSALRMVWIISRHYNKDERMIPLMERIAWEIAERVCRVVNLRTLFKENRASAQSKTLEARNTLRLWKKAYFDTRAKIEASGREDRWEFDRKRLFERTDYMATICQDLSDVLQILEEFYNIFGPELKAVTGDPKRIDDVLCRVDGLVTPMENLTFDPFSIKSSQFWKYVMDEFKIEVL-IDIINKIFVQN--------------------------LENP--------------------PLYKNH---PP-------VAGAIYWERSLFFRIKHTILRFQEVQEILDSDRGQEVKQKYLEVGRTMKEYEDRKYEQWME 628
The following BLAST results are available for this feature:
BLAST of TCONS_00024278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH102.072e-14849.09Dynein heavy chain 10, axonemal OS=Homo sapiens GN... [more]
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