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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024280 ID=TCONS_00024280|Name=TCONS_00024280|organism=Clytia hemisphaerica|type=transcript|length=3082bpRun BLAST on NCBI transcript from alignment at sc0000486:128593..182554+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024280 ID=TCONS_00024280|Name=TCONS_00024280|organism=Clytia hemisphaerica|type=transcript|length=53962bp|location=Sequence derived from alignment at sc0000486:128593..182554+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024280 vs. Swiss-Prot (Human)
Match: DYH10 (Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4) HSP 1 Score: 834.328 bits (2154), Expect = 0.000e+0 Identity = 402/765 (52.55%), Postives = 549/765 (71.76%), Query Frame = 3
Query: 144 YVVDFSTKLSEVIMESKYLEQTGYSIPELARNVALQEDKYVRNVDGLKRMLSQYHNCLNMLNPAEYQLLESHIKDLQRVLKPGEKRLNWNSLGINDYIVKCEQAISKFESLINQVQKNAKDIQGRLAVIEKCRLFQRPPPKAGNILPEAKEYLEFVGRVRLHEMDSLARKYRAIGPLLTKMEGIVVHTNTGKSPALCEYYQYWEKKIFDSLLKFVCKNLRSLINQIQSNQPMFQVETVLSAPEIVLLPAASELYKQLLQMVRDTVESTKLFIRWMHGTCIETPPQYSNNEDEPIIFSFFKDLSAHPQVIELVVQVSKSVQSILGGLNKYLNKWKRYRRLWSLDKTMLIEKFASKKPSCVQYDEKLQFYSNLVEEIGGQPRTKDIDFIHLNLEPLVLSIQTNARSWVQSIGNFLKDAAKDNLFALKANLESHSEDLKRAPDTLEDLKFVLSSIAKIREMQLEVELEICDLRERYRTLEMYNIQAGESERELASNILQIWEDLSYQAKEVDASLVSVKKTFTELTQTQVGDFSSQITSFRQVFVNEGPGSVDSDLDRGVELLKTFKEDFNRFEKDRQELANAEKLFDLPITMYSEMQQMEKEIKGLELIYGIYERQKAARIKWSSTLWANLNVTVLSDGVDGFIKEIKKLPRDVKALPICHILEEKLREFKNSIPLFSDLKNEALRERHWKRLMELTKMDFDLNPETFTLENMFAMELHRFTEIIQDIVGSAVKELSIEKGITEVAETWGNMKFSVYKYMKGTQERG 2438
+ ++FS L E+I E+KYLEQ G+++PELARNVALQEDK++R G++RML YH + LN AE LL+ H ++L RV + G KRLNWNSLGI DYI C+QAI KFESL++Q+ KNA DI RL +IE LF+ P K+ LP KE+ E + R R ++D + R Y AIGPLLTK+EG+VVHTNTGK+P L YY+YWEKKI++ L K + KNL+S + I N P+F ET+L+APEI+L P +E+ K VR+ VE TK F+RWM+G+CIE PPQ E+E +I +F+ D+S +PQ+IE V + ++V IL L KYL KWKRYR LW LDK +++EKFA+KKP CV YDEKLQFYS + E+ P KD I L L L ++Q NA+SWV S+G L ++AK+ L+ L +E +++L++ P+TLEDLKFVL++IA+IR L +EL D++ERYRT+ MYN+ ++E+EL I IW +L + V+ +L +K+TFTELT+ ++ ++ QI F + F +EGPGSV DLD+GVELL ++ + R EK RQELANAEKLFDLPITMY E+ +++KE+ GL +IY +YE K A+ +WS TLW NLNV +L +G++GF++ ++KLPR V+ L + + LE K++ FK+SIPL DLKNEALR+RHWK LME T + F++ ETFTLENMFAMELH+ T+++ +IV +A+KE++IEK + E+ +TW NMKF+V KY KGTQERG
Sbjct: 662 FAINFSPALREIINETKYLEQLGFTVPELARNVALQEDKFLRYTAGIQRMLDHYHMLIGTLNDAESVLLKDHSQELLRVFRSGYKRLNWNSLGIGDYITGCKQAIGKFESLVHQIHKNADDISSRLTLIEAINLFKYPAAKSEEELPGVKEFFEHIERERASDVDHMVRWYLAIGPLLTKVEGLVVHTNTGKAPKLASYYKYWEKKIYEVLTKLILKNLQSFNSLILGNVPLFHTETILTAPEIILHPNTNEIDKMCFHCVRNCVEITKHFVRWMNGSCIECPPQ-KGEEEEVVIINFYNDISLNPQIIEQAVMIPQNVHRILINLMKYLQKWKRYRPLWKLDKAIVMEKFAAKKPPCVAYDEKLQFYSKIAYEVMRHPLIKDEHCIRLQLRHLANTVQENAKSWVISLGKLLNESAKEELYNLHEEMEHLAKNLRKIPNTLEDLKFVLATIAEIRSKSLVMELRYRDVQERYRTMAMYNLFPPDAEKELVDKIESIWSNLFNDSVNVEHALGDIKRTFTELTRGEIMNYRVQIEEFAKRFYSEGPGSVGDDLDKGVELLGVYERELARHEKSRQELANAEKLFDLPITMYPELLKVQKEMSGLRMIYELYEGLKVAKEEWSQTLWINLNVQILQEGIEGFLRALRKLPRPVRGLSVTYYLEAKMKAFKDSIPLLLDLKNEALRDRHWKELMEKTSVFFEMT-ETFTLENMFAMELHKHTDVLNEIVTAAIKEVAIEKAVKEILDTWENMKFTVVKYCKGTQERG 1424 The following BLAST results are available for this feature:
BLAST of TCONS_00024280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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