TCONS_00024335 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024335
Unique NameTCONS_00024335
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024335 ID=TCONS_00024335|Name=TCONS_00024335|organism=Clytia hemisphaerica|type=transcript|length=905bp
GTATCTGAGGCAGTTAACTTTTTTTACAACCAAACATGGAAAATGGAGTT
TTATATGACGAAGTCAATGGAAATCTGCCAACTATACCGCAACCGCAACG
GGCTTTAAGCCACCGCGAATTTAACCAGAATGACTTAACCGAGCGAAGAA
AAGAATTTAGTAAGCGGTGTCTAACTTTCCGTTTCGAAAGGGGAGACCGG
CTTATTCTGTCAGTCAATCCGCTATCGACATTCATTGGAGGTTTCTTGCT
TTGGTTGGTCATTATTTGGGCTGTAGTAGACCATGATCAAAGTGCTGGGT
ATTTCAACGAAGCTCGATTATGGATCACTGATAAATGCACCTGGTTTTAT
GTTGGCAGTCAATTAGTATGGGTCATTTTGATTATCATCATTTATTTCAA
ATATGGTCATCTTCGATTAGGTTTAGACACTGACCGTCCAAGATATAACA
ATTTTGAGTATTTCACAATGGTTTTTACAACTGGCTTATCGACAGGTCTT
TTGTATGACTCTGTCAATGGACCTATTGTTGGATACAGAAATGAGAATAC
CCAAAATTTATTATTATACCAAGGAAAaaacACTTACATAGCGCAAGCAC
AAAATTCGTTGAATGTGACCATGCTTCATTGGGGACTTCAGGGTTTCAGT
GTATATGTACTTCCATGTCTTCTACTCTCCGTTCTTTGTTATCGGAAAGG
TTTACCTTTATCAGCCCGTTCGATGCTCTATCCTGTCTTTGGCAAAAAAG
TCTTTGGAAGGCTTGGTGATTGTGTTGATGGTTTTACAATCGTTTCTATC
AGTTTTGGCGTTGCGACGTCGTTCAATCTCGGCTCCTTAAGTATGGTATC
TGGAGCCAGAATACTCTTTCCCGAATTGGAGGATAGTCAAACAGCAAGGT
TTATA
Run BLAST on NCBI

transcript from alignment at sc0000487:120075..126446-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024335 ID=TCONS_00024335|Name=TCONS_00024335|organism=Clytia hemisphaerica|type=transcript|length=6372bp|location=Sequence derived from alignment at sc0000487:120075..126446- (Clytia hemisphaerica)
GTATCTGAGGCAGTTAACTTTGTAAGTACTTTAATGTGATTAATTTTCGC
GGGGACTTAATTTCGCTGATAATATTTTCACGATTTAGTGCTATTTTTGC
TATTTTACTGCCAAACTATGCATATTGGTTGTGAAATATGCATTATTAGC
GCTTCTTTGATGGCGGTGAATATGTTAAAAGTGGTCTTTTGATATTTTTT
GAAATTTGGTTCATAAAAAAGTTTAGTGGATGAGACCTTTTCAAATTTCC
TTTGGGACTTATTTTTGCGGACGCGACACCCAAATCCGCCAAATTTAATC
CACGTGAAAATTAATCCCATTAAATTAGTAGTAAGTTAGTAAAATGGTTA
TGTTAAAATTTGTAATTATTTTTCAACTCGTCAAAATATCCTGTCTGAGA
AATGGAAAAAGCTAAAAAAAACTTTTGACTTCATAGGGAAAGGTGAGTAC
TCTTTCTGTTCTTATAAATATACTTTGAATCTAATTGCTTGCAAAGATAG
AACATGTAAGGCAAACCGCTTTGAGTGATATTCTATAAAAGATTTGAACC
ACCATTTAGGTCATTACTGAGATATTTTCTCTCCATCTATCTTTATTAAA
GGGACCGAAATTTGTAAACAAACCGTATGCAGCGGGATACAAAATCAAAA
CAAATGTCACAGGCCAAAATAAAAAAATTAAAACAAATATGGCTGATTTT
GATTGTTCCAATTGTTTTGTTTTGGACACGTGATTTTAATTGTTCTCTTT
AATGACACGTGGTTCGCACAATGTTTATATTTGACTAATTTTATGTCCCT
TTAAATTTAATAACCTAGTTTTACAACCAAACATGGAAAATGGAGTTTTA
TATGACGAAGTCAATGGAAATCTGCCAACTATACCGCAACCGCAACGGGC
TTTAAGCCACCGCGAATTTAACCAGAATGACTTAACCGAGCGAAGAAAAG
AATTTAGTAAGCGGTAAGTCCTGATATACTCTTTTTTTGTAAGCATAACA
TTTATAAGCATGCTTAGGCTCAAACTCGGTAAAAAATAAGCATAATGCCA
AGCATACAAGCTGAAATGCAAAAAAAAACTTGTGCAGCTTTTCTAAAACG
CTGACCTTTTTAGGGTTACTTTCAAAGTCATTGCAACGTCTTCTGACATT
ACATCATGGACCCAACAGCTGATTGGTTGTAAGTGACGTAAAATCAATCA
GTACGTCAATTGCAACCAATCAGCTGTTGGGCCCATGGAAGACATTGTAA
TAGTGCATATCATGAATAACGTGTCAATTTCCATATTTCAGGTGTCTAAC
TTTCCGTTTCGAAAGGGGAGACCGGCTTATTCTGTCAGTCAATCCGCTAT
CGACATTCATTGGAGGTTTCTTGCTTTGGTTGGTCATTATTTGGGCTGTA
GTAGACCATGATCAAAGTGCTGGGTATTTCAACGAAGCTCGATTATGGAT
CACTGATAAATGCACCTGGTAATCTGATACCTCCGTTTTATTCTTTTTTG
AAAATACATTGGAGTCCCTTCAGTTAACAATCCCTTATAGACTTTACTCA
ATAACTTGAAATTTCCCTAACTCGAACAAAGTATATATACAGTTTTTCAT
ACAATTGAGTCTCGAACCTCTATAACTCGAATGTCTCCTTAACTCGAACA
AGTTTTATCGTCCCTTCAGCTAACAATCCCTTATAAACTTTACTCAATAA
CTTGAAATTTCCCTAACTCGAACAAAGTGTATATGTAGTGTTTCATACAA
TTGAGTCTCGAACCTCTATAACTTGAATGTCTTCTTAACTCGAACAAGTT
TTATCGTCCCTTCAGTTAACAATCCCTTATAAACTTTACTCAATAACTTG
AAATTTCCCTAACTCGAACAAAGTATATATATAGTGTTTCATACAATTGA
GTCTCGAACCTCTATAACTCGAATGTCTCCTTAATTCGTGCAAGTTTTCT
AGTCCCTTTAGTTAACAATGTCTTATAAATCATTGTCCATAGCTCTAAGT
AACAAATTCCAATTCCCCGTGCGCGTTAGTTATGGAGACTCCACTGCACC
ACGTATTGGTATTTTTTAGTGACTTTACCAAATAAATTATTTAAAAACAG
TAATTTAATTTAGGAGAACAGTTGAACAAAATAAGCGTAGAGGTACTTGT
CAGGGTCCTTAAGTAAGAATCTGCATGAGGAAGTAAATACAAACTCTTGT
TTATTCGAACTTCTATTATTCATGTGATGTAGTGCTATAGTGGTTATCGT
GCTTGGCTTCAGTCCAGGAGGCCCGAGTTCGATACCCACCGTGGCACTAC
GATTCACTTGGCAAGTGAATGCTCCTTCGCCCAGGTCAACCCATGCCATG
TGAGGGGAATTGGGTACCATAACTCTGATACAAGAGTATGGGTAGATATT
CCAGGCATTCTGGTGTGCTGAGACACTTTAAGAGGTTCTACTCCTGCGAG
GACATCCGTTCTCCCGTGTAGTTCGAGTGTCGTGGTATACACCATGGCTC
GGCAGCTTGCATCTGCAGGGCTGCAATTTCTGCTTGCACTGTGATTCCTA
CTCCATCGTGGTTAGGACCCATTCCGATGCATCGGATGGTATATCTATAT
CTTTATATCTATATCTATTATTCAAGTCTTTTTATAATTCGAATCTCTCT
GTAATTCGAACAAATAGGATTTCCCGTTCGATTTGGTCGAATTAGTGAGA
GTCAACTATAGATAAATATCCGTTTCTTCCTCCAACTCCGATTCGTTCTT
TTATAGGTTTTATGTTGGCAGTCAATTAGTATGGGTCATTTTGATTATCA
TCATTTATTTCAAATATGGTCATCTTCGATTAGGTACGTACAAGGTGGAG
CCCAGAACTGATAAAAAAGACGGTCCAACGGGGAGCGAATCTAAAACACT
ATGATGGGATCACGAGGAACTTATAATAATTAGATATACTAAACTAAGTT
TGTGACCCAAAGGCTTCTGATGTTTTCCTTGGATTCTCCCACTTACCCTT
GACCCTTTCTCTTTGTCGATGGAGCTGGGTTGAACCCACTACCTTGCACG
CCTTAGCTGGATTTTTACCTTTATGCTACGGTTTTTCAGAGTTAAACTAG
TTTTAAAAAACACATTTATTCTTCTACACAGGTTTAGACACTGACCGTCC
AAGATATAACAATTTTGAGTATTTCACAATGGTTTTTACAACTGGCTTAT
CGACAGGTCTTTTGTATGACTCTGTCAATGGACCTATTGTTGGATACAGA
AATGAGAATACCCAAAATTTATTATTATACCAAGGAAAGTGAGTGAATGA
CACTTTTGTCATTCTACTATTATTGTTAAGTTGTTTTTTTATTTTTATAC
CGGGTGCGCCACAAAAAGGTTTCTCTCTTTAAAGTGAATTTCTTTGAGTT
CTAAAAACTTTGAAAGGATCAAACTTTTTCCATTGGAAAGAAAAAAGATA
AACTTGAATTTTGATGGGTCATTTATCAAATTTGATTCTTTAGATTAAAA
GTTATGCTCAATTGAATAAAAAGTTACTTTCAAAAAGTGCTCAAAAACGT
TGAAAATCGACCTAATTAATCAGAAGCGTAATCACTTAACACATCAGTAT
TTTCGTTTCAATCATTAAAAATGATATTTAGCTGTGAAAATGACCTTTTG
TTATAACAAAGGAAGATTGAATTTCAATAAAAAGAAGAAAATTCGTCGGA
AAATACCAAAGAATTTGGTAAGATTCATGAAAATACATAAAATATGGGTT
TCGAAGTAAATCCTGCCTTACATTGACTTTATCTTTATCCAGTCTAGAAG
CAAAAATCTGAGGAAAAATTCGGTAAAAAGTAAATCAAAATGACTAAGAT
GACGATTCCAAACCTTTTGGGGATTCAGTTTCAAAATTTATGTGTTTGAT
TACTAATGCTCTTTAATCATGTGAAAGCTATTACGATTGCTAATTTTGAA
ATTAAAATTTGATAGGTCAATTTTCAACGTTTTCGAGCACTTTCTGGAAG
TAACTTTTTATTAAATTATGCGTAACTTTTGATCTAATGAACCGAATTTA
ATAAATGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTTCAATGAAAA
AGGAATGGTTCTTTAAGAATTTTTAGACCTCGAGAAGATTAACTTTAAAG
AGAGAAACTTTTTTGTGGTGCATCCGGTATGAATCGAATGCTAAGGGGAT
GAAAATTTTAGTTCGAATTACAGAAAGATTCGAATAATAGAGTTTCGAAT
TAAAGAAGGTTGACTTTTTCTTTTATAGAAACACTTACATAGCGCAAGCA
CAAAATTCGTTGAATGTGACCATGCTTCATTGGGGACTTCAGGGTTTCAG
TGTATATGTACTTCCATGTCTTCTACTCTCCGTTCTTTGTTATCGGAAAG
GTGAGTATTCATGATATGCACACAACGTTGTTTTAACGTTTACCTAACGT
TATATGGACGTTGTGAACGTTAGATGAACGTTGAAACAACGTTGTGTGCC
AGCTGGGTGTTCATGATATGAACCATTGCAATCTCTTCCACGGACCCAAC
AGCTGATTGGTTGCAAGTGACGTATTGATTGATTTTACGTCACTTGAGAC
CACTCAGCTGTTGGGTCTGTGATGTAATGTCAGGAGATATTGCAAAATGA
TCCATCACCACTGCAATGATTTCAACTTTGTTCCACCCAATACGTCACTT
TTTCTATTGTTTAAATTGGGTGGAAAGTTTCAAAAAGGTCTCAGAAGACT
TTCCAGTGGTGCATATCATCAATACGTTTTTTATAAGAACATCCAGAATT
TTTGGATGTCTTTGGATGTTCTTAACTCTTTGAGTTTTAAGCCTACATAT
GTTCTTAGCATGTTCTTATTTTCGTAATTTTGTGAGTATTTTTGTCCCAT
TTCCTAAGGAATCGGGTGTTTTAGCCAAAGCCTTCTTAATATTTCAGCCA
TCGAAGCCTTCAATTCTTGTATACTTTGCTCTTATAAAAAAGACCTAAAT
ACCGATGTTATTTCCTAGTATTTCCTTATTACTCTGCACATTGCAATTAT
TCAGTCTAAAGGCCGTGGTTCCGTAAGAGAATCTACCCAGTCTAGTGGAC
CACTGGTTCTTTTTCACTCAGCTTTTGAGTGCGCTGATTGGCTAAGGCAA
AATAATTGCACAAAAACAAAACGTCAATCATAAACATTAACATTAGAATC
CAGTCGTTTTCACTTTCGTTTTTAAGCAAAAAGCAATGCGGTTTTGAATG
TTTTGACGATGTTATCGTCCGTTACAGTGATAGTAAAGTCGGGAAAATAT
GGCGTTATGGCGTTAAGACGGTATACGGGAAAAATCGGCGGGAGAGTTTC
GGAGAGTGGCAAACTCTACCGACTTTTGGCTTATTTCTTAGATAGTGATT
TGTCTTAGACTATAGCATAGTCTAATGCTGTTATAAGAAATTTATGTTTT
CCATAGGTTTACCTTTATCAGCCCGTTCGATGCTCTATCCTGTCTTTGGC
AAAAAAGTCTTTGGAAGGCTTGGTGATTGTGTTGATGGTTTTACAATCGT
TTCTATCAGTTTTGGCGTTGCGACGTCGTTCAATCTCGGCTCCTTAAGTA
TGGTATCTGGAGCCAGAATACTCTTTCCCGAATTGGAGGATAGTCAAACA
GCAAGGTTTGTGAGTTATTTGGCGCTAACTATAGCATAATGTGTTGAATT
TACAAAAGGAATTAGCTAACAGAAAACATACTTGTCTCCCAATAGACCCT
AGTAAGAATCGCAGATCTCTACAAAACCCCAGGTAGTCATGCAGTAAGGA
GCACGAATCCGTTAGTGGATGCCAGCAACCTAAATAGACCCCCCCCTGCA
AATTAATTTTTGAGAAAAAAACAATACCTCCTTTTATCAGCCCTTGTATT
CGTTTTTTATAAGAACGTCCAAAATTTTTGAACCATTCGAATGTTCTAAA
ATTAGCCTAAAAATGTTTTTAGAATGCTCTTAATTTTCCTACTTTGTAAA
TTTTTTTGTGAAATTTTCTAAGAAATTGGGTGTTTTGAAGTCCACAATAT
TTTTGCCATCGAAGCTTTATGTTCTCATTTAATTTGTTTTTATAAAGGAA
AGAAACGTGCAAATCATGGAAACATTTTCAGACTTTCAAACTTGGACAAA
AATGACGTAATTTGGTAAATTTGGGTCCAAAGTTAGCTTTTAGTTTCGTA
CTATAAGACCTTGCTAACATGTAATGTTTTAAAATCTATATCTAAAATTT
ACAGTAGTTCAAACTTTTGGTATTACAATAATGTCCAGTAAGCTTTTTTT
GCCTACTTGACCCCTAGCTCATGAACTGAAATTGTTTTGAGCATTGATAT
TTATTTCGTCCATAGGTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013646XLOC_013646Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024335-exon-sc0000487-1575043694:126426..126446TCONS_00024335-exon-sc0000487-1575043694:126426..126446Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1575043694:125484..125628TCONS_00024335-exon-sc0000487-1575043694:125484..125628Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1575043694:124979..125155TCONS_00024335-exon-sc0000487-1575043694:124979..125155Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1575043694:123614..123690TCONS_00024335-exon-sc0000487-1575043694:123614..123690Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1575043694:123159..123315TCONS_00024335-exon-sc0000487-1575043694:123159..123315Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1575043694:122047..122168TCONS_00024335-exon-sc0000487-1575043694:122047..122168Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1575043694:120792..120990TCONS_00024335-exon-sc0000487-1575043694:120792..120990Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1575043694:120075..120081TCONS_00024335-exon-sc0000487-1575043694:120075..120081Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1510915933:126426..126446TCONS_00024335-exon-sc0000487-1510915933:126426..126446Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1510915933:125484..125628TCONS_00024335-exon-sc0000487-1510915933:125484..125628Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1510915933:124979..125155TCONS_00024335-exon-sc0000487-1510915933:124979..125155Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1510915933:123614..123690TCONS_00024335-exon-sc0000487-1510915933:123614..123690Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1510915933:123159..123315TCONS_00024335-exon-sc0000487-1510915933:123159..123315Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1510915933:122047..122168TCONS_00024335-exon-sc0000487-1510915933:122047..122168Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1510915933:120792..120990TCONS_00024335-exon-sc0000487-1510915933:120792..120990Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1510915933:120075..120081TCONS_00024335-exon-sc0000487-1510915933:120075..120081Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1491911889:126426..126446TCONS_00024335-exon-sc0000487-1491911889:126426..126446Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1491911889:125484..125628TCONS_00024335-exon-sc0000487-1491911889:125484..125628Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1491911889:124979..125155TCONS_00024335-exon-sc0000487-1491911889:124979..125155Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1491911889:123614..123690TCONS_00024335-exon-sc0000487-1491911889:123614..123690Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1491911889:123159..123315TCONS_00024335-exon-sc0000487-1491911889:123159..123315Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1491911889:122047..122168TCONS_00024335-exon-sc0000487-1491911889:122047..122168Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1491911889:120792..120990TCONS_00024335-exon-sc0000487-1491911889:120792..120990Clytia hemisphaericaexon
TCONS_00024335-exon-sc0000487-1491911889:120075..120081TCONS_00024335-exon-sc0000487-1491911889:120075..120081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:120075..126446 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120221	0.127567	0	0	0	0	0	0	0	0	0	0	1.79651	1.63148	0	0	0	0	7.72923	7.20826	0.00500723	0	0	0	0	0	0	0	9.53597e-05	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024335 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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