TCONS_00024336 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024336
Unique NameTCONS_00024336
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024336 ID=TCONS_00024336|Name=TCONS_00024336|organism=Clytia hemisphaerica|type=transcript|length=1150bp
GTTCTTTAGGCTGTTTGCTCAAAATGTTAGCAAATTATTGACATGGCTGG
GTAGTGTATATCATTATaatagatttttcaatttttcagtaaTTTGCCAA
TATTTTGAGCTTATCCTTTTATCTCAAAGATTTATCTATTccatcaaaag
atttttaatttataatatatttaaatAATTTATAGATTGCACATTTTCTC
CTACTTGATCATAGGAGAGATTCAAACTTGGTAACATGTATGGTTGTGAT
CCCTTGGAAGTTGAGAATAGACCATGTGACGTTGGAACAGAAAACCGCAG
CATGTTGACACTACCTGATGGTCTCGAAATATGCAAATCCAAAATACCAG
GTGCTGGTATGGGGGTCAAAGCGAAGAAGTTTTTCAGGATAGGAACTCGA
TTTGGACCATATGATGGTAGCAAAGTCGTTCCTGGAGAACTCAAAGATCC
AAAAGTGGATACTTCATATATGTGGgagATCATGCTAGGCAAGAAAGTTA
TACATTACATCAACGGTAAAGACATGAGGTATGGCAACTGGCTTCGATAT
ATCAATTGCTCGCGTATCGAAGAAGAACAAAATCTGGTGGCATTTCAATA
CAAAAGTCAAATCTATCATAGAGCTTACAAAGACATTAACATTGGAGACG
AGCTGTTGGTTTGGTATGGTAATGAATATGCCAAAGAATTGGGTATCATC
GACGAATGTGACGGCTTTGATGATGAAAATATGGATATTGATTTGCGTGG
AACAATAGGTCCAGTCTTCGAATGTAATTTATGTCACAACTATTTTACCG
ACAAGAAACGTTTGTTGAATCACATGAAAATTTGCATCACAcaccaaatc
aaaacattgcatACAAGACAACAAAGTAAATCTCAATTAGCTCGTCTACA
ACTTTGCCGAAAACGTCCATCTCTAACTGCAACAAATGGCATCAACTCTA
AACCACTTTCCATGAAACAGCAGCCTCGATTCAAATGTAATCATTGTGGT
AAATGCTTTACAACAGACTTAACACTTGATTCTCATAACTGTACGCTACC
ACAAACATCGTCATCAATGAAATGTCATGTATGTGGGCTGAAATTCGAAC
AGTCATCACATCTAGAATTTCATCTAACTGtccatcaagattttgaaagg
Run BLAST on NCBI

protein sequence of TCONS_00024336-protein

>TCONS_00024336-protein ID=TCONS_00024336-protein|Name=TCONS_00024336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MYGCDPLEVENRPCDVGTENRSMLTLPDGLEICKSKIPGAGMGVKAKKFF
RIGTRFGPYDGSKVVPGELKDPKVDTSYMWEIMLGKKVIHYINGKDMRYG
NWLRYINCSRIEEEQNLVAFQYKSQIYHRAYKDINIGDELLVWYGNEYAK
ELGIIDECDGFDDENMDIDLRGTIGPVFECNLCHNYFTDKKRLLNHMKIC
ITHQIKTLHTRQQSKSQLARLQLCRKRPSLTATNGINSKPLSMKQQPRFK
CNHCGKCFTTDLTLDSHNCTLPQTSSSMKCHVCGLKFEQSSHLEFHLTVH
QDFER
Run BLAST on NCBI

transcript from alignment at sc0000487:133490..137726-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024336 ID=TCONS_00024336|Name=TCONS_00024336|organism=Clytia hemisphaerica|type=transcript|length=4237bp|location=Sequence derived from alignment at sc0000487:133490..137726- (Clytia hemisphaerica)
GTTCTTTAGGCTGTTTGCTCAAAATGTTAGCAAATTATTGACATGGCTGG
GTAGTGTATATCATTATAATAGATTTTTCAATTTTTCAGTAATTTGCCAA
TATTTTGAGCTTATCCTTTTATCTCAAAGATTTATCTATTCCATCAAAAG
ATTTTTAATTTATAATATATTTAAATAATTTATAGATTGCACATTTTCTC
CTACTTGATCATAGGAGAGATTCAAACTTGGTAACATGTATGGTTGTGAT
CCCTTGGAAGTTGAGAATAGACCATGTGACGTTGGAACAGAAAACCGCAG
CATGTTGACACTACCTGATGGTCTCGAAATATGCAAATCCAAAATACCAG
GTAAAGACTAATGTATATCTCACAAACATCTCTTCAATAGAGAAGATAGA
GAAGACAAATAACCATCAGAAGAATAACCTTGCGGTCGCAAACTTACATT
TAATTACTATTCTCGTATTAGTGTACATTATACTGAAGACGGCGTAAACC
GTTAAAAACTTTTGTCTAGATAAAAATAGATTTTCTTTTTTGCAATTCAT
GATATGCACCACTGGAGAGTCTTCTGAAAACTTTTGAAATTTTCCACCCA
ATACGTAAACATAAACAATAGAAAAAGTGACGTATTGGGCGGAATAAAAA
CAGAAAAATTACATAATTTTGTAAAGTCATTGCAGTGGTGCATATCATGA
AATCTGTTCATGGAGGGTGGAGGATATATTATTTTTTTTCATGAATTACC
CCTGGACATTTTGATTTTTAACCCTCTGGGCACNTCAATACCCCTGGACA
ATTCATCCATTCATCCTCCACCCCCCATGAACGGTTTTTTTCTGGAAGAG
CCCATTGCAGTGGTGCATATCATGAATACACTTTATAAAAGTGGTTGACG
GCATTTATAAGGACTAATTCTCATTCCACCCCTTTGTTCTTTGAGGTTTT
TAGGTTTTGGTCTGTAATTGAAACTTATGTTTTATTTCCCTTTTCATACA
AGGTGCTGGTATGGGGGTCAAAGCGAAGAAGTTTTTCAGGATAGGAACTC
GATTTGGACCATATGATGGTAGCAAAGTCGTTCCTGGAGAACTCAAAGAT
CCAAAAGTGGATACTTCATATATGTGGGAGGTTTGTTTTGTTTTTATCGC
TTTCTTAGGTCTTATAAAATGTTTTGCTTTTTTCTCTCTCTCTCTTTATA
ATATGGGTTACACGGTACACTTACGAACAAGCTTTTGTAATGTATCCGGC
AGTTATTGTGGAATGGCATCTATTTTTCTCTGAACTAAAAAAAATCCACA
GCAGTTAACTTGCTCTATTTGGGTGTAATGGGGGGGGGGTTAGGGCTTCT
TATAGTAGTTAGACTTGCTGTCCGGGGGTCAAAAGTCAGAATTTCCAGGG
GTCCCCCACCTAAATTTCCAAAATATGTTATATCCTCCACCCCCTCCCCG
TATTGAAATATTTTCTGGAAACGTTCCTTTAATTTGCTCTTTACTTAACA
AAAATCTCTCTTATCTTAAATTTATTTCACAATTTACAAGATCATGCTAG
GCAAGAAAGTTATACATTACATCAACGGTAAAGACATGAGGTATGGCAAC
TGGCTTCGATATATCAATTGCTCGCGTATCGAAGAAGAACAAAATCTGGT
GGCATTTCAATACAAAAGTCAAATCTATCATAGAGCTTACAAAGGTATCT
TCACACTTGCAAATGCATTTTTACTATAGCTTATATTCATGGGAACTTTC
GCGTTTTGAGTTTCTACCGCGAAAATTTCTTTCCTGTGAAACACAATTTT
TGCGGAAAATTCTAAAGAATCCCTGGAAAATTGAAAGATCTTTTGGCTAT
AGTGGCCAAAGTGCAAAAAAAAACTTAAATAAAAGAGAATTTATCTTATA
CCCTCGTACTGAAAATTAGCATCGCGAAAATTATATCACCTTTTTAGCCC
TTTTTACGCCNATTTTGTGGAATAAAGTCACTTTTGGTTTTTGTTATGAT
CCAGCACTCCTAAATACTCCTCCAGATGGATGTTTGTGCCAATGCTAGAT
CAGCATTTCATAAATATACCATTATTATTATTATTATTATTATTATAATG
TAACAAAGTTCTAGGCGCATGAGGGCCTCTGGAACTGATCGTGATTATAC
GTATTTTACAATTGTCTTGTGTTGAATCTTTTCGGGTGTTTAGTCCATGC
AGTGTTGAGTCTTTCTTTGAAAACTTTGACTGTCTTTGCCTCAGCGACAT
CTTTTGGCAATTTATTCCAGGTTGGTATAGTTCGATAAAAGAAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCATCGCTTC
CAAAGTTTGGAATCATCTCAAAGTTGTGCCTTCTGTTTGGTCGCGTTCGA
CGGGCTATCTTGTTTGGGATGGTATCTTTTTCGTAATAGTTGACGTGCTT
GTAAAGTTGGACCATGTCACAAAAATGTCTTCTAAACTCGAGCGTAGGAA
GATCTAATTCACGCAATCGTTCTTCATAAGACATATTACGACATTTTTGA
ACAAGTTTTGTTGCCCGTCTTTGTACTCCTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAACCAATATGGATATTTCACTGAAAATAAGAACATTGTAGGC
TTAAAATGATTGAAACGTTCTAAAGTCATAATTACAATAAGAATATTTTA
AGAACATAAGCCTACAAATTTCAAAGAAATTAAGAACAGTCCAGCCTGAG
CCAAAATTTTACTGGTTCTTAAAGGGATTATCAGATGGTTTTTGTTATTT
GGCTTAGAAATACCTTTCATTGTCCAAAGAGACACCTCTAAATCTTTTGA
CCCTATTGTTTTCTAAAGCTGAAATATTTGACTTTGAAATCTCTAAAAAT
GAGCAAGTTAAAAGAATTGAAAATTCAACGTCGAATATCTCAGCTTTGGA
AAATAATTGGGTCAAAAACTTTGGAGGTGTTTCTTAGGACCACAAAAGGT
ATCTCTAAGCCAAATATCAAAATTCATCTGATAATTCTTTTACAAAAAGC
ATATATCACTTGTCCTTTAGACATTAACATTGGAGACGAGCTGTTGGTTT
GGTATGGTAATGAATATGCCAAAGAATTGGGTATCATCGACGAATGTGAC
GGCTTTGATGATGAAAATATGGATATTGATTTGCGTGGAACAATAGGTAT
CTTCAAAATTTACAAACCGAAGATCTTCCACTTAAATATTTATACAGAGG
GTTGAGGAGTCTTGAAAATTGAGTTCTTAAAAATATGTTGAAACCCCCTG
TGATAAGATATGCACCCCCTCTCCCTGGCTCGTGTGATTATTCGTCTTAT
CACAAAGACACATTTTTCTATTAAAACTTTATTGTCTCTTATCAGGTCCA
GTCTTCGAATGTAATTTATGTCACAACTATTTTACCGACAAGAAACGTTT
GTTGAATCACATGAAAATTTGCATCACACACCAAATCAAAACATTGCATA
CAAGACAACAAAGTAAATCTCAATTAGCTCGTCTACAACTTTGCCGAAAA
CGTCCATCTCTAACTGCAACAAATGGCATCAACTCTAAACCACTTTCCAT
GAAACAGCAGCCTCGATTCAAATGTAATCATTGTGGTAAATGCTTTACAA
CAGACTTAACACTTGATTCTCATAACTGTACGCTACCACAAACATCGTCA
TCAATGAAATGTCATGTATGTGGGCTGAAATTCGAACAGTCATCACATCT
AGAATTTCATCTAACTGTCCATCAAGATTTTGAAAGG

Coding sequence (CDS) from alignment at sc0000487:133490..137726-

>TCONS_00024336 ID=TCONS_00024336|Name=TCONS_00024336|organism=Clytia hemisphaerica|type=CDS|length=4575bp|location=Sequence derived from alignment at sc0000487:133490..137726- (Clytia hemisphaerica)
GTCCAGTCTTCGAATGTAATTTATGTCACAACTATTTTACCGACAAGAAA
CGTTTGTTGAATCACATGAAAATTTGCATCACACACCAAATCAAAACATT
GCATACAAGACAACAAAGTAAATCTCAATTAGCTCGTCTACAACTTTGCC
GAAAACGTCCATCTCTAACTGCAACAAATGGCATCAACTCTAAACCACTT
TCCATGAAACAGCAGCCTCGATTCAAATGTAATCATTGTGGTAAATGCTT
TACAACAGACTTAACACTTGATTCTCATAACTGTACGCTACCACAAACAT
CGTCATCAATGAAATGTCATGTATGTGGGCTGAAATTCGAACAGTCATCA
CATCTAGAATTTCATCTAACTGTCCATCAAGATTTTGAAAGGACATTAAC
ATTGGAGACGAGCTGTTGGTTTGGTATGGTAATGAATATGCCAAAGAATT
GGGTATCATCGACGAATGTGACGGCTTTGATGATGAAAATATGGATATTG
ATTTGCGTGGAACAATAGATCATGCTAGGCAAGAAAGTTATACATTACAT
CAACGGTAAAGACATGAGGTATGGCAACTGGCTTCGATATATCAATTGCT
CGCGTATCGAAGAAGAACAAAATCTGGTGGCATTTCAATACAAAAGTCAA
ATCTATCATAGAGCTTACAAAGGTGCTGGTATGGGGGTCAAAGCGAAGAA
GTTTTTCAGGATAGGAACTCGATTTGGACCATATGATGGTAGCAAAGTCG
TTCCTGGAGAACTCAAAGATCCAAAAGTGGATACTTCATATATGTGGGAG
ATGTATGGTTGTGATCCCTTGGAAGTTGAGAATAGACCATGTGACGTTGG
AACAGAAAACCGCAGCATGTTGACACTACCTGATGGTCTCGAAATATGCA
AATCCAAAATACCAGGTCCAGTCTTCGAATGTAATTTATGTCACAACTAT
TTTACCGACAAGAAACGTTTGTTGAATCACATGAAAATTTGCATCACACA
CCAAATCAAAACATTGCATACAAGACAACAAAGTAAATCTCAATTAGCTC
GTCTACAACTTTGCCGAAAACGTCCATCTCTAACTGCAACAAATGGCATC
AACTCTAAACCACTTTCCATGAAACAGCAGCCTCGATTCAAATGTAATCA
TTGTGGTAAATGCTTTACAACAGACTTAACACTTGATTCTCATAACTGTA
CGCTACCACAAACATCGTCATCAATGAAATGTCATGTATGTGGGCTGAAA
TTCGAACAGTCATCACATCTAGAATTTCATCTAACTGTCCATCAAGATTT
TGAAAGGACATTAACATTGGAGACGAGCTGTTGGTTTGGTATGGTAATGA
ATATGCCAAAGAATTGGGTATCATCGACGAATGTGACGGCTTTGATGATG
AAAATATGGATATTGATTTGCGTGGAACAATAGATCATGCTAGGCAAGAA
AGTTATACATTACATCAACGGTAAAGACATGAGGTATGGCAACTGGCTTC
GATATATCAATTGCTCGCGTATCGAAGAAGAACAAAATCTGGTGGCATTT
CAATACAAAAGTCAAATCTATCATAGAGCTTACAAAGGTGCTGGTATGGG
GGTCAAAGCGAAGAAGTTTTTCAGGATAGGAACTCGATTTGGACCATATG
ATGGTAGCAAAGTCGTTCCTGGAGAACTCAAAGATCCAAAAGTGGATACT
TCATATATGTGGGAGATGTATGGTTGTGATCCCTTGGAAGTTGAGAATAG
ACCATGTGACGTTGGAACAGAAAACCGCAGCATGTTGACACTACCTGATG
GTCTCGAAATATGCAAATCCAAAATACCAGGTCCAGTCTTCGAATGTAAT
TTATGTCACAACTATTTTACCGACAAGAAACGTTTGTTGAATCACATGAA
AATTTGCATCACACACCAAATCAAAACATTGCATACAAGACAACAAAGTA
AATCTCAATTAGCTCGTCTACAACTTTGCCGAAAACGTCCATCTCTAACT
GCAACAAATGGCATCAACTCTAAACCACTTTCCATGAAACAGCAGCCTCG
ATTCAAATGTAATCATTGTGGTAAATGCTTTACAACAGACTTAACACTTG
ATTCTCATAACTGTACGCTACCACAAACATCGTCATCAATGAAATGTCAT
GTATGTGGGCTGAAATTCGAACAGTCATCACATCTAGAATTTCATCTAAC
TGTCCATCAAGATTTTGAAAGGACATTAACATTGGAGACGAGCTGTTGGT
TTGGTATGGTAATGAATATGCCAAAGAATTGGGTATCATCGACGAATGTG
ACGGCTTTGATGATGAAAATATGGATATTGATTTGCGTGGAACAATAGAT
CATGCTAGGCAAGAAAGTTATACATTACATCAACGGTAAAGACATGAGGT
ATGGCAACTGGCTTCGATATATCAATTGCTCGCGTATCGAAGAAGAACAA
AATCTGGTGGCATTTCAATACAAAAGTCAAATCTATCATAGAGCTTACAA
AGGTGCTGGTATGGGGGTCAAAGCGAAGAAGTTTTTCAGGATAGGAACTC
GATTTGGACCATATGATGGTAGCAAAGTCGTTCCTGGAGAACTCAAAGAT
CCAAAAGTGGATACTTCATATATGTGGGAGATGTATGGTTGTGATCCCTT
GGAAGTTGAGAATAGACCATGTGACGTTGGAACAGAAAACCGCAGCATGT
TGACACTACCTGATGGTCTCGAAATATGCAAATCCAAAATACCAGGTCCA
GTCTTCGAATGTAATTTATGTCACAACTATTTTACCGACAAGAAACGTTT
GTTGAATCACATGAAAATTTGCATCACACACCAAATCAAAACATTGCATA
CAAGACAACAAAGTAAATCTCAATTAGCTCGTCTACAACTTTGCCGAAAA
CGTCCATCTCTAACTGCAACAAATGGCATCAACTCTAAACCACTTTCCAT
GAAACAGCAGCCTCGATTCAAATGTAATCATTGTGGTAAATGCTTTACAA
CAGACTTAACACTTGATTCTCATAACTGTACGCTACCACAAACATCGTCA
TCAATGAAATGTCATGTATGTGGGCTGAAATTCGAACAGTCATCACATCT
AGAATTTCATCTAACTGTCCATCAAGATTTTGAAAGGACATTAACATTGG
AGACGAGCTGTTGGTTTGGTATGGTAATGAATATGCCAAAGAATTGGGTA
TCATCGACGAATGTGACGGCTTTGATGATGAAAATATGGATATTGATTTG
CGTGGAACAATAGATCATGCTAGGCAAGAAAGTTATACATTACATCAACG
GTAAAGACATGAGGTATGGCAACTGGCTTCGATATATCAATTGCTCGCGT
ATCGAAGAAGAACAAAATCTGGTGGCATTTCAATACAAAAGTCAAATCTA
TCATAGAGCTTACAAAGGTGCTGGTATGGGGGTCAAAGCGAAGAAGTTTT
TCAGGATAGGAACTCGATTTGGACCATATGATGGTAGCAAAGTCGTTCCT
GGAGAACTCAAAGATCCAAAAGTGGATACTTCATATATGTGGGAGATGTA
TGGTTGTGATCCCTTGGAAGTTGAGAATAGACCATGTGACGTTGGAACAG
AAAACCGCAGCATGTTGACACTACCTGATGGTCTCGAAATATGCAAATCC
AAAATACCAGGTCCAGTCTTCGAATGTAATTTATGTCACAACTATTTTAC
CGACAAGAAACGTTTGTTGAATCACATGAAAATTTGCATCACACACCAAA
TCAAAACATTGCATACAAGACAACAAAGTAAATCTCAATTAGCTCGTCTA
CAACTTTGCCGAAAACGTCCATCTCTAACTGCAACAAATGGCATCAACTC
TAAACCACTTTCCATGAAACAGCAGCCTCGATTCAAATGTAATCATTGTG
GTAAATGCTTTACAACAGACTTAACACTTGATTCTCATAACTGTACGCTA
CCACAAACATCGTCATCAATGAAATGTCATGTATGTGGGCTGAAATTCGA
ACAGTCATCACATCTAGAATTTCATCTAACTGTCCATCAAGATTTTGAAA
GGACATTAACATTGGAGACGAGCTGTTGGTTTGGTATGGTAATGAATATG
CCAAAGAATTGGGTATCATCGACGAATGTGACGGCTTTGATGATGAAAAT
ATGGATATTGATTTGCGTGGAACAATAGATCATGCTAGGCAAGAAAGTTA
TACATTACATCAACGGTAAAGACATGAGGTATGGCAACTGGCTTCGATAT
ATCAATTGCTCGCGTATCGAAGAAGAACAAAATCTGGTGGCATTTCAATA
CAAAAGTCAAATCTATCATAGAGCTTACAAAGGTGCTGGTATGGGGGTCA
AAGCGAAGAAGTTTTTCAGGATAGGAACTCGATTTGGACCATATGATGGT
AGCAAAGTCGTTCCTGGAGAACTCAAAGATCCAAAAGTGGATACTTCATA
TATGTGGGAGATGTATGGTTGTGATCCCTTGGAAGTTGAGAATAGACCAT
GTGACGTTGGAACAGAAAACCGCAGCATGTTGACACTACCTGATGGTCTC
GAAATATGCAAATCCAAAATACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013647XLOC_013647Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024336-proteinTCONS_00024336-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024336-exon-sc0000487-1575043694:137377..137726TCONS_00024336-exon-sc0000487-1575043694:137377..137726Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1575043694:136597..136724TCONS_00024336-exon-sc0000487-1575043694:136597..136724Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1575043694:136033..136186TCONS_00024336-exon-sc0000487-1575043694:136033..136186Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1575043694:134081..134206TCONS_00024336-exon-sc0000487-1575043694:134081..134206Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1575043694:133490..133881TCONS_00024336-exon-sc0000487-1575043694:133490..133881Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1510915933:137377..137726TCONS_00024336-exon-sc0000487-1510915933:137377..137726Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1510915933:136597..136724TCONS_00024336-exon-sc0000487-1510915933:136597..136724Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1510915933:136033..136186TCONS_00024336-exon-sc0000487-1510915933:136033..136186Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1510915933:134081..134206TCONS_00024336-exon-sc0000487-1510915933:134081..134206Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1510915933:133490..133881TCONS_00024336-exon-sc0000487-1510915933:133490..133881Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1491911889:137377..137726TCONS_00024336-exon-sc0000487-1491911889:137377..137726Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1491911889:136597..136724TCONS_00024336-exon-sc0000487-1491911889:136597..136724Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1491911889:136033..136186TCONS_00024336-exon-sc0000487-1491911889:136033..136186Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1491911889:134081..134206TCONS_00024336-exon-sc0000487-1491911889:134081..134206Clytia hemisphaericaexon
TCONS_00024336-exon-sc0000487-1491911889:133490..133881TCONS_00024336-exon-sc0000487-1491911889:133490..133881Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:133490..137726 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.409062	0.61548	0.0671322	0.0666941	1.405	1.23512	1.35922	2.46452	0.502752	1.11128	0.474784	1.01766	0.707895	0.504557	0.43229	0.492396	0.484897	0.225048	0.121369	0	0	0.159939	1.35099	1.20145	1.37006	3.63679	0.228862	0.152218	0.588532	1.20397
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00024336 vs. Swiss-Prot (Human)
Match: PRDM9 (Histone-lysine N-methyltransferase PRDM9 OS=Homo sapiens GN=PRDM9 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.096e-35
Identity = 78/194 (40.21%), Postives = 105/194 (54.12%), Query Frame = 2 
Query:  251 PLEVENRPCDVGTENRSMLTLPDGLEICKSKIPGAGMGV-KAKKFFRIGTRFGPYDGSKVVPGELKDPKVDTSYMWEIMLGKKVIHYINGKDMRYGNWLRYINCSRIEEEQNLVAFQYKSQIYHRAYKDINIGDELLVWYGNEYAKELGIIDECDGFDDENMDIDLRGTIGPVFECNLCHNYFTDKKRLLNHMK 829
            P  V++   D G  NRS L+LP GL I  S IP AG+GV        +G  FGPY+G      E      +  Y W I  G+    Y++GKD  + NW+RY+NC+R +EEQNLVAFQY  QI++R  + I  G ELLVWYG+EY +ELGI        +     + +  I P   C L    F+ +K L  H++
Sbjct:  222 PTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEA----ANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELLVWYGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLA---FSSQKFLSQHVE 408
The following BLAST results are available for this feature:
BLAST of TCONS_00024336 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRDM97.096e-3540.21Histone-lysine N-methyltransferase PRDM9 OS=Homo s... [more]
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