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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024350 ID=TCONS_00024350|Name=TCONS_00024350|organism=Clytia hemisphaerica|type=transcript|length=1894bp
AAAAACCTTTGTACCTGCTTTATTTTGGTTTCTATACttgataaaaatca
taaaatatcttGTTAAAGTCTAAATATCACCTTATTAAATGATTggtttg
gtcagtaaaatacaCAAATACGCCATTTATTTACATCCGGTATCGAAGAC
ACAACGTGACTTCTGCTGTTCAAATGCGTAATCACAGCAAAGCTCTCTTT
ACACATTTAGGCAAACTCATTAAAAAAGATGGTGTTTATCTTTTGTAAAG
TGTTTGTAAGTGCTTGCTTACTTTATCCACTTCACGAAGTACAGTTGTTT
ACTACATGGTGATTGAATATGTTCGAAAATGATATTACAGGCTCGTGGCA
TCCAGCAGGATTTCATGGGCACTTCAGAAGTAAATCTCGTAATGATATTG
ATACACTCTATCGCCACGGTGCCAAACCTCAGCCACCACAGTTGTTCTAC
AAGAGATCTGAGGTGAGGTCAGACAATCATAATTTTTCAAGACATGATAA
TCGAAATACACATGCAAGTGGAATGGGTGATTTAGAAATGCATTTTTCAA
TGGGACTTGGGAAACGTAAACCTGGAGCTAAATCACAACATTATAAATCA
ACCAGCAGTCTCTTGCATTGGCACAATGACAACAACAGCCCTGCACCATC
ACctattcaacaacaaaaaaatcaatggCAAAACCAAACAAGCTATTTAC
AATCTTATAAGACCATTAATAAAGACTCTCAACCTAAGAATGTTGTTACT
CATGAACCTATACACAGTCGACGAAATCCAGCTCTGCGGAGAAAATTATT
ATCAGCTCGAATGTCTGAAAGGAATCCAATCGCTCCTCCATTATTAGCCT
GGGGACCAATAGATGGTAAAAGtactgaaaattttaaaccctGTGTAGGA
GATTCATCACGTCGAATAATTCATAGAACTCCACCGCAGAGGATTGTTGA
AACAAAAACATCTAATGACCGAGTTGTTCGATACCCACGTGTTAAATcgg
ctttttgaaaataatttcttatCAGTTCATTTTGTTATGAAGAGGGAACA
AGTTGTCGGCGAATTACATTGAATTATTGACTGTCCTTGCACTTTTACGT
ACGGTACTGTTCAATATTATTCAGGGTGCAGAAAGAAGCTATTCTATTTG
ATAAAGATGAAGATTGGAAAAGAATCCTTTTAAGGGGTTTGAATGGAGAT
CTTACAAGATTCTACATGGACCATCATGGGTCATTGGAACTGCTCAAAAC
TGCTCATTAGATGAACAAAATCCAGCAGCAATGGATTTAATACATATTTG
TTATTTGAAAGTCTCATTTGAAAGACTAATGATAAAAGATAGTTGAATAA
TTCAAACCTTCTACTAAATTTCTTGATGTAGGATTCATCGCATTTTATAG
ATTTCTTTGAAGAAGCTATACATGGCACTTTGGCAAGTTTCACTCGAAGG
TTGAACGttagattattttgatttttttatatttcaaaaaattatttcat
ttttggtTTGTGATAATTAACAGTGAAAGCTTTCAGAATTATGTATtctt
caaaaattctttttactGTATTCAAGATTTCATTGTTCTAGCCTAGCTAT
ACTATATTTTATGAATTCAAAATTTAAGTACAAATTCAATCACAATTCTA
AAATAGTCATCGCTCTATTATTGAATGCTGACCTTTGACCCCGGGGAGgt
gcagctgggcaaaaggaccgacgggtatgtgcgggtcctaagggtacctt
ttccaatatgtttagaatgcactgtaagggtcggaaaaactagagatgca
ctgtaagggtagaaatttcagaaaattcttgaaaaatctagatattttga
ccaaaaatgctagaattttgaccattttttgcacgaaagggatc Run BLAST on NCBI protein sequence of TCONS_00024350-protein >TCONS_00024350-protein ID=TCONS_00024350-protein|Name=TCONS_00024350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MFENDITGSWHPAGFHGHFRSKSRNDIDTLYRHGAKPQPPQLFYKRSEVR
SDNHNFSRHDNRNTHASGMGDLEMHFSMGLGKRKPGAKSQHYKSTSSLLH
WHNDNNSPAPSPIQQQKNQWQNQTSYLQSYKTINKDSQPKNVVTHEPIHS
RRNPALRRKLLSARMSERNPIAPPLLAWGPIDGKSTENFKPCVGDSSRRI
IHRTPPQRIVETKTSNDRVVRYPRVKSAF Run BLAST on NCBI transcript from alignment at sc0000489:92788..96935+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024350 ID=TCONS_00024350|Name=TCONS_00024350|organism=Clytia hemisphaerica|type=transcript|length=4148bp|location=Sequence derived from alignment at sc0000489:92788..96935+ (Clytia hemisphaerica)
AAAAACCTTTGTACCTGCTTTATTTTGGTTTCTATACttgataaaaatca
taaaatatcttGTTAAAGTCTAAATATCACCTTATTAAATGATTggtttg
gtcagtaaaatacaCAAATACGCCATTTATTTACATCCGGTATCGAAGAC
ACAACGTGACTTCTGCTGTTCAAATGCGTAATCACAGCAAAGCTCTCTTT
ACACATTTAGGCAAACTCATTAAAAAAGATGGTGTTTATCTTTTGTAAAG
TGTTTGTAAGTGCTTGCTTACTTTATCCACTTCACGAAGTACAGTTGTTT
ACTACATGGTGATTGAATATGTTCGAAAATGATATTACAGGCTCGTGGGT
AAGTAACCTTGTTTGTATTATTGCTACATAATAATTAAAGTTTTATCCAT
CCCGTGCCGTCCTATGGGCTGTTTCTTCACCCAAAATTTTTATATCAACT
TGTAGACGAGATAATGACAAATCAGTAATCAAGCACAAATCACTAGGCAA
AATAAATTACATCAATCACCAATCTACGAATCTACTTGGGCAATATCCAA
CAAAAACATAACATTATTCTTTGTTTTGAGTTTGATTTGTTTGAAGTATA
CCAAACCAACAAAGAAAATTTGCCTTTTGAGGCATCTCTGTCTCCAGAGA
AActtacaatagaccttttttcaaagaggccaccctgttgaataattatg
tactgtagtccagcagaaaaacaatgataaaaccatgcataatgtataca
atatacatgatacagtaattatgcatggctctatcattgtttttatggct
ggaatacaaaattattcaacagggcgtcctatttgaaaaaaggtctatac
tttTGATTGAACGCAATCAATAAAAATGCTGAGGTTCTGTGAAGCCTGTT
TTCAGGAATCATAGGAAATTCAACATGATGAGACAGGAGAGGTGGCAAGA
TAAAATTTTGGGAGTCAGGTTCTCCTGAAAGTTTAAGGAACTGGGCACAA
ACTTACATTATTGAGATATGTAGCTAAGTTTCATTATCTTTTTAGCccat
ttgaatttatttttattctagCATCCAGCAGGATTTCATGGGCACTTCAG
AAGTAAATCTCGTAATGATATTGATACACTCTATCGCCACGGTGCCAAAC
CTCAGCCACCACAGTTGTTCTACAAGAGATCTGAGGTTTGAAAGAATTCA
CTTAAATTGGTTATTGCTAGAGCTGAAATGaaacacaatattcaatcaAA
ATTAGGCAAGATCGATTTGATTTATTGTTATACGGGAATACCTTTACAAA
AATATGGGTCAGTTGATATGataataaatttctttaaaaaatcaaggGTC
GGAAAATCAAGATCCAAAAATGTTTGACGTTTTGAATTGAAGCACTAGAC
TTTTCCCCTTTTACTGATTGGCAACTTTACAAGGATATCTCCAAAAAATT
TATGAAGTCCATCCTCCAACTTcgcaaattcaatattattgtCAGTCGGA
TTAAACAATAAATTGATTTAGTCTTGCCTAAGCCACCTGATATCTCTCTC
ACTCACATAATCTAATATATATGAAATCTAATCTCTTCTGAGtgtgacaa
tttaaaaaaaaagaattaagggaaaaaaatgagttttcttgACACTGCCT
CTGCCTAAAGTAATGCAATGATTCAGTGCTCCTGTGCACTCTTTTATTAA
CCAGCATTTTTTTGTCGGGACTTGTAAGCTTTTGTTTATGTCAACCTTGG
TGTTAATTTGATTGTTAATTTGCCAGGAACTCTGCTATTCCATGTTTaga
gtttttcttttgtaagGAAGCAGAACTAAGGTGATTTTATGATTTGATAT
TATGATTTTTATATGTTATAATAAATTATATGTTACATGGATAATAAGTT
TTATCACTTTTGAGCTTCCCTGCTCTCAATCTATTGTAATTTATTCATCC
TTGTTATAGGTGAGGTCAGACAATCATAATTTTTCAAGACATGATAATCG
AAATACACATGCAAGTGGAATGGGTGATTTAGAAATGCATTTTTCAATGG
TATACATCTTTTTtttaaggaacacgtttataaggaacttaaAGCTTAGA
GTAATGGTCCGAAAAAAAGGAACTgatcaggctgagaataagaaaaaaaa
ttaaggaacagtaagaattaaacttgaacttgcacacatttacaaaaagc
taaacaaaaaatttataaaatattgatgaaaCGACATTCAAAAAGGTCTT
TTTCTGCATTGTAAGCAATTGTTCCACATAGCATCAAATCAGCCCAAGAA
TTTttatgagaaaattttcattatctcttacaaattgatcattttccaAA
TTGTATTTTTCCTGTTCAAATTTTGAGTATCTGTAGCGTAGATTTATATT
TCATATTCActtaaaatattgtttttaatattttgtttcaaaatggactg
ttttattaaaaatccatacagggttggacgaaccttttcaagtcaaaata
aaattcttggaaatttgaggataccccctggaaaatggcaaaatttgcaa
agaaaccCTCGGCAAAATTTATTCTTTTACTTCAAAGTGACGGTGGACAA
ACTAAAACTTGTCTTcaacccccctggaaattttagaataacttttcgcc
ccctggaaaatgaaaaaaccacTCTTTTAAACCCCTGGAAATGTTTCTCA
ggttaccctctggaaatgttcgtccccccccccccccccctgcatggaga
taaaatggaatggcccagtTTTTTAGATATtgattttccttcatttttga
TTGTAGGGACTTGGGAAACGTAAACCTGGAGCTAAATCACAACATTATAA
ATCAACCAGCAGTCTCTTGCATTGGCACAATGACAACAACAGCCCTGCAC
CATCACctattcaacaacaaaaaaatcaatggCAAAACCAAACAAGCTAT
TTACAATCTTATAAGACCATTAATAAAGACTCTCAACCTAAGAATGTTGT
TACTCATGAACCTATACACAGTCGACGAAATCCAGCTCTGCGGAGAAAAT
TATTATCAGCTCGAATGTCTGAAAGGAATCCAATCGCTCCTCCATTATTA
GCCTGGGGACCAATAGATGGTAAAAGtactgaaaattttaaaccctGTGT
AGGAGATTCATCACGTCGAATAATTCATAGAACTCCACCGCAGAGGATTG
TTGAAACAAAAACATCTAATGACCGAGTTGTTCGATACCCACGTGTTAAA
TcggctttttgaaaataatttcttatCAGTTCATTTTGTTATGAAGAGGG
AACAAGTTGTCGGCGAATTACATTGAATTATTGACTGTCCTTGCACTTTT
ACGTACGGTACTGTTCAATATTATTCAGGGTGCAGAAAGAAGCTATTCTA
TTTGATAAAGATGAAGATTGGAAAAGAATCCTTTTAAGGGGTTTGAATGG
AGATCTTACAAGATTCTACATGGACCATCATGGGTCATTGGAACTGCTCA
AAACTGCTCATTAGATGAACAAAATCCAGCAGCAATGGATTTAATACATA
TTTGTTATTTGAAAGTCTCATTTGAAAGACTAATGATAAAAGATAGTTGA
ATAATTCAAACCTTCTACTAAATTTCTTGATGTAGGATTCATCGCATTTT
ATAGATTTCTTTGAAGAAGCTATACATGGCACTTTGGCAAGTTTCACTCG
AAGGTTGAACGttagattattttgatttttttatatttcaaaaaattatt
tcatttttggtTTGTGATAATTAACAGTGAAAGCTTTCAGAATTATGTAT
tcttcaaaaattctttttactGTATTCAAGATTTCATTGTTCTAGCCTAG
CTATACTATATTTTATGAATTCAAAATTTAAGTACAAATTCAATCACAAT
TCTAAAATAGTCATCGCTCTATTATTGAATGCTGACCTTTGACCCCGGGG
AGgtgcagctgggcaaaaggaccgacgggtatgtgcgggtcctaagggta
ccttttccaatatgtttagaatgcactgtaagggtcggaaaaactagaga
tgcactgtaagggtagaaatttcagaaaattcttgaaaaatctagatatt
ttgaccaaaaatgctagaattttgaccattttttgcacgaaagggatc Coding sequence (CDS) from alignment at sc0000489:92788..96935+ >TCONS_00024350 ID=TCONS_00024350|Name=TCONS_00024350|organism=Clytia hemisphaerica|type=CDS|length=2760bp|location=Sequence derived from alignment at sc0000489:92788..96935+ (Clytia hemisphaerica)
ATGTTCGAAAATGATATTACAGGCTCGTGGCATCCAGCAGGATTTCATGG
GCACTTCAGAAGTAAATCTCGTAATGATATTGATACACTCTATCGCCACG
GTGCCAAACCTCAGCCACCACAGTTGTTCTACAAGAGATCTGAGGTGAGG
TCAGACAATCATAATTTTTCAAGACATGATAATCGAAATACACATGCAAG
TGGAATGGGTGATTTAGAAATGCATTTTTCAATGGGACTTGGGAAACGTA
AACCTGGAGCTAAATCACAACATTATAAATCAACCAGCAGTCTCTTGCAT
TGGCACAATGACAACAACAGCCCTGCACCATCACctattcaacaacaaaa
aaatcaatggCAAAACCAAACAAGCTATTTACAATCTTATAAGACCATTA
ATAAAGACTCTCAACCTAAGAATGTTGTTACTCATGAACCTATACACAGT
CGACGAAATCCAGCTCTGCGGAGAAAATTATTATCAGCTCGAATGTCTGA
AAGGAATCCAATCGCTCCTCCATTATTAGCCTGGGGACCAATAGATGGTA
AAAGtactgaaaattttaaaccctGTGTAGGAGATTCATCACGTCGAATA
ATTCATAGAACTCCACCGCAGAGGATTGTTGAAACAAAAACATCTAATGA
CCGAGTTGTTCGATACCCACGTGTTAAATcggctttttgaATGTTCGAAA
ATGATATTACAGGCTCGTGGCATCCAGCAGGATTTCATGGGCACTTCAGA
AGTAAATCTCGTAATGATATTGATACACTCTATCGCCACGGTGCCAAACC
TCAGCCACCACAGTTGTTCTACAAGAGATCTGAGGTGAGGTCAGACAATC
ATAATTTTTCAAGACATGATAATCGAAATACACATGCAAGTGGAATGGGT
GATTTAGAAATGCATTTTTCAATGGGACTTGGGAAACGTAAACCTGGAGC
TAAATCACAACATTATAAATCAACCAGCAGTCTCTTGCATTGGCACAATG
ACAACAACAGCCCTGCACCATCACctattcaacaacaaaaaaatcaatgg
CAAAACCAAACAAGCTATTTACAATCTTATAAGACCATTAATAAAGACTC
TCAACCTAAGAATGTTGTTACTCATGAACCTATACACAGTCGACGAAATC
CAGCTCTGCGGAGAAAATTATTATCAGCTCGAATGTCTGAAAGGAATCCA
ATCGCTCCTCCATTATTAGCCTGGGGACCAATAGATGGTAAAAGtactga
aaattttaaaccctGTGTAGGAGATTCATCACGTCGAATAATTCATAGAA
CTCCACCGCAGAGGATTGTTGAAACAAAAACATCTAATGACCGAGTTGTT
CGATACCCACGTGTTAAATcggctttttgaATGTTCGAAAATGATATTAC
AGGCTCGTGGCATCCAGCAGGATTTCATGGGCACTTCAGAAGTAAATCTC
GTAATGATATTGATACACTCTATCGCCACGGTGCCAAACCTCAGCCACCA
CAGTTGTTCTACAAGAGATCTGAGGTGAGGTCAGACAATCATAATTTTTC
AAGACATGATAATCGAAATACACATGCAAGTGGAATGGGTGATTTAGAAA
TGCATTTTTCAATGGGACTTGGGAAACGTAAACCTGGAGCTAAATCACAA
CATTATAAATCAACCAGCAGTCTCTTGCATTGGCACAATGACAACAACAG
CCCTGCACCATCACctattcaacaacaaaaaaatcaatggCAAAACCAAA
CAAGCTATTTACAATCTTATAAGACCATTAATAAAGACTCTCAACCTAAG
AATGTTGTTACTCATGAACCTATACACAGTCGACGAAATCCAGCTCTGCG
GAGAAAATTATTATCAGCTCGAATGTCTGAAAGGAATCCAATCGCTCCTC
CATTATTAGCCTGGGGACCAATAGATGGTAAAAGtactgaaaattttaaa
ccctGTGTAGGAGATTCATCACGTCGAATAATTCATAGAACTCCACCGCA
GAGGATTGTTGAAACAAAAACATCTAATGACCGAGTTGTTCGATACCCAC
GTGTTAAATcggctttttgaATGTTCGAAAATGATATTACAGGCTCGTGG
CATCCAGCAGGATTTCATGGGCACTTCAGAAGTAAATCTCGTAATGATAT
TGATACACTCTATCGCCACGGTGCCAAACCTCAGCCACCACAGTTGTTCT
ACAAGAGATCTGAGGTGAGGTCAGACAATCATAATTTTTCAAGACATGAT
AATCGAAATACACATGCAAGTGGAATGGGTGATTTAGAAATGCATTTTTC
AATGGGACTTGGGAAACGTAAACCTGGAGCTAAATCACAACATTATAAAT
CAACCAGCAGTCTCTTGCATTGGCACAATGACAACAACAGCCCTGCACCA
TCACctattcaacaacaaaaaaatcaatggCAAAACCAAACAAGCTATTT
ACAATCTTATAAGACCATTAATAAAGACTCTCAACCTAAGAATGTTGTTA
CTCATGAACCTATACACAGTCGACGAAATCCAGCTCTGCGGAGAAAATTA
TTATCAGCTCGAATGTCTGAAAGGAATCCAATCGCTCCTCCATTATTAGC
CTGGGGACCAATAGATGGTAAAAGtactgaaaattttaaaccctGTGTAG
GAGATTCATCACGTCGAATAATTCATAGAACTCCACCGCAGAGGATTGTT
GAAACAAAAACATCTAATGACCGAGTTGTTCGATACCCACGTGTTAAATc
ggctttttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024350-exon-sc0000489-1491911889:92788..93135 | TCONS_00024350-exon-sc0000489-1491911889:92788..93135 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1510915933:92788..93135 | TCONS_00024350-exon-sc0000489-1510915933:92788..93135 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1575043694:92788..93135 | TCONS_00024350-exon-sc0000489-1575043694:92788..93135 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1491911889:93859..93972 | TCONS_00024350-exon-sc0000489-1491911889:93859..93972 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1510915933:93859..93972 | TCONS_00024350-exon-sc0000489-1510915933:93859..93972 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1575043694:93859..93972 | TCONS_00024350-exon-sc0000489-1575043694:93859..93972 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1491911889:94747..94836 | TCONS_00024350-exon-sc0000489-1491911889:94747..94836 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1510915933:94747..94836 | TCONS_00024350-exon-sc0000489-1510915933:94747..94836 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1575043694:94747..94836 | TCONS_00024350-exon-sc0000489-1575043694:94747..94836 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1491911889:95594..96935 | TCONS_00024350-exon-sc0000489-1491911889:95594..96935 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1510915933:95594..96935 | TCONS_00024350-exon-sc0000489-1510915933:95594..96935 | Clytia hemisphaerica | exon |
| TCONS_00024350-exon-sc0000489-1575043694:95594..96935 | TCONS_00024350-exon-sc0000489-1575043694:95594..96935 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000489 | supercontig | sc0000489:92788..96935 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029369 | HDNR |
Blast
The following BLAST results are available for this feature:
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