TCONS_00024383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024383
Unique NameTCONS_00024383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024383 ID=TCONS_00024383|Name=TCONS_00024383|organism=Clytia hemisphaerica|type=transcript|length=414bp
ggagacattcgagttatagaggttcgagttatggagacccAACTGtatca
atagaccttatcggagtttttgatttttctaaaaaagcggtGCATTGTGG
GATTCTTTctagtgtattacaatagaattccctcgaggaattcctaagag
atttctattgtaataaaCTCGAAACAAtctcacaatgcatcgctttttta
gaaaaatcaaaaactccaataAGGTCTATTGCAACATGAAGTAATCATTG
AGCCTTTTACTATGCTGGTTAGAGTAAAATGATTGTTGCTGGATCGACAA
TCTGTCATTGCCAACAATCTTCTTATCGTAAAGTACCTTTAGGATAAACC
TTTGTTCTTTAGTAGATTTGTGTACTCAAAAGGTCAAATGTTACTAAAGA
GTACTGTTTTCTCC
Run BLAST on NCBI

transcript from alignment at sc0000489:181250..181663

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024383 ID=TCONS_00024383|Name=TCONS_00024383|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000489:181250..181663 (Clytia hemisphaerica)
GGAGAAAACAGTACTCTTTAGTAACATTTGACCTTTTGAGTACACAAATC
TACTAAAGAACAAAGGTTTATCCTAAAGGTACTTTACGATAAGAAGATTG
TTGGCAATGACAGATTGTCGATCCAGCAACAATCATTTTACTCTAACCAG
CATAGTAAAAGGCTCAATGATTACTTCATGTTGCAATAGACCTtattgga
gtttttgatttttctaaaaaagcgatgcattgtgagaTTGTTTCGAGttt
attacaatagaaatctcttaggaattcctcgagggaattctattgtaata
cactagAAAGAATCCCACAATGCaccgcttttttagaaaaatcaaaaact
ccgataaggtctattgataCAGTTgggtctccataactcgaacctctata
actcgaatgtctcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013685XLOC_013685Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024383-exon-sc0000489-1491911889:181250..181663TCONS_00024383-exon-sc0000489-1491911889:181250..181663Clytia hemisphaericaexon
TCONS_00024383-exon-sc0000489-1510915933:181250..181663TCONS_00024383-exon-sc0000489-1510915933:181250..181663Clytia hemisphaericaexon
TCONS_00024383-exon-sc0000489-1575043694:181250..181663TCONS_00024383-exon-sc0000489-1575043694:181250..181663Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000489supercontigsc0000489:181250..181663 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63162	1.19359	2.49945	2.5539	0.485823	1.55669	0.737124	0.679879	0.299632	0.693503	0.930712	0.432878	1.11936	0.772908	0.993128	1.07307	3.01254	1.03535	0	0.868348	6.79845	7.78115	1.38895	4.38267	1.11541	3.31834	3.33839	3.14723	1.9354	1.30706
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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