TCONS_00024385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024385
Unique NameTCONS_00024385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024385 ID=TCONS_00024385|Name=TCONS_00024385|organism=Clytia hemisphaerica|type=transcript|length=312bp
CCTTTGTGAAGGTGTTCAGAAGTCTCTTATCGTAATCGTCCGTAACTCGT
CCGCCATATTGGACCTGGCCGATCATGTATCGCACGGTTGTCCAGGAAAC
GCCTCGCTTGATGTCCATATCATCCAAATGATTTTGTATGAACTGTACGG
AAGACGagaaatctgattggttgaattcGTATGGGATATTCCAACCCAGA
CTCCCGAATTTGCGTCTCTCTTGGACAGTTGTGTGAAGGAAGGCGACTGC
GTATAACATGGGTTTCCATTGGTGGAGGTTGGTAATGTCTAGTTGGTCTT
GCGTGATTCCTG
Run BLAST on NCBI

transcript from alignment at sc0000491:75348..75890+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024385 ID=TCONS_00024385|Name=TCONS_00024385|organism=Clytia hemisphaerica|type=transcript|length=543bp|location=Sequence derived from alignment at sc0000491:75348..75890+ (Clytia hemisphaerica)
CCTTTGTGAAGGTGTTCAGAAGTCTCTTATCGTAATCGTCCGTAACTCGT
CCGCCATATTGGACCTGGCCGATCATGTATCGCACGGTTGTCCAGGAAAC
GCCTCGCTTGATGTCCATATCATCCAAATGATTTTGTATGAACTGTACGG
AAGACGagaaatctgattggttgaattcGTATGGGATATTCCAACCCAGA
CTCCCGAATTTGCGTCTCTCTTGGACAGTTGTGTGAAGGAAGGCGACTGC
GTATAACATGGGNgagaaaagttggtaactaacgaacgaacgaacgaact
aactaactaactaacgaacacgggttaatttataggacctccaccccacc
ggggtaggtccaaaaatcccTAATCAAACTCATCCGAGATAAGTTAATTG
GGTCTTGTAAAGTTAAAGACTACAAATCAGGGGGCGAAAGATAGCTTTAN
CTTGGACAGTTGTGTGAAGGAAGGCGACTGCGTATAACATGGGTTTCCAT
TGGTGGAGGTTGGTAATGTCTAGTTGGTCTTGCGTGATTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013687XLOC_013687Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024385-exon-sc0000491-1491911889:75348..75589TCONS_00024385-exon-sc0000491-1491911889:75348..75589Clytia hemisphaericaexon
TCONS_00024385-exon-sc0000491-1510915933:75348..75589TCONS_00024385-exon-sc0000491-1510915933:75348..75589Clytia hemisphaericaexon
TCONS_00024385-exon-sc0000491-1575043694:75348..75589TCONS_00024385-exon-sc0000491-1575043694:75348..75589Clytia hemisphaericaexon
TCONS_00024385-exon-sc0000491-1491911889:75821..75890TCONS_00024385-exon-sc0000491-1491911889:75821..75890Clytia hemisphaericaexon
TCONS_00024385-exon-sc0000491-1510915933:75821..75890TCONS_00024385-exon-sc0000491-1510915933:75821..75890Clytia hemisphaericaexon
TCONS_00024385-exon-sc0000491-1575043694:75821..75890TCONS_00024385-exon-sc0000491-1575043694:75821..75890Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000491supercontigsc0000491:75348..75890 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00258	0.733845	1.57802	1.60835	21.2617	15.2418	11.0402	12.0423	7.04769	5.44213	6.22783	4.05659	0.555847	1.06026	0	0.763629	0.674955	3.05816	7.52455	9.83531	1.83379	6.99175	0	3.86498	0	4.26495	4.4001	0	0.498262	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004273Dynein_heavy_dom
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
cellular_component GO:0030286 dynein complex
molecular_function GO:0003777 microtubule motor activity
Blast
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BLAST of TCONS_00024385 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 2.093e-58
Identity = 83/103 (80.58%), Postives = 99/103 (96.12%), Query Frame = -3 
Query:    2 GITQDQLDITNLHQWKPMLYAVAFLHTTVQERRKFGSLGWNIPYEFNQSDFSSSVQFIQNHLDDMDIKRGVSWTTVRYMIGQVQYGGRVTDDYDKRLLNTFTK 310
            G++QD LD+++  QWKPMLYAVAFLH+TVQERRKFG+LGWNIPYEFNQ+DF+++VQFIQNHLDDMD+K+GVSWTT+RYMIG++QYGGRVTDDYDKRLLNTF K
Sbjct: 4167 GVSQDLLDVSSGSQWKPMLYAVAFLHSTVQERRKFGALGWNIPYEFNQADFNATVQFIQNHLDDMDVKKGVSWTTIRYMIGEIQYGGRVTDDYDKRLLNTFAK 4269
The following BLAST results are available for this feature:
BLAST of TCONS_00024385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH52.093e-5880.58Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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