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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024396 ID=TCONS_00024396|Name=TCONS_00024396|organism=Clytia hemisphaerica|type=transcript|length=829bpRun BLAST on NCBI protein sequence of TCONS_00024396-protein >TCONS_00024396-protein ID=TCONS_00024396-protein|Name=TCONS_00024396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp MIMATLTEKAEWKKLQQHYDGEAKTFHMRKLFQDDSNRFNKFSKTLSTPERun BLAST on NCBI transcript from alignment at sc0000491:87..24026- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024396 ID=TCONS_00024396|Name=TCONS_00024396|organism=Clytia hemisphaerica|type=transcript|length=23940bp|location=Sequence derived from alignment at sc0000491:87..24026- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000491:87..24026- >TCONS_00024396 ID=TCONS_00024396|Name=TCONS_00024396|organism=Clytia hemisphaerica|type=CDS|length=7047bp|location=Sequence derived from alignment at sc0000491:87..24026- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00024396 vs. Swiss-Prot (Human)
Match: G6PI (Glucose-6-phosphate isomerase OS=Homo sapiens GN=GPI PE=1 SV=4) HSP 1 Score: 336.265 bits (861), Expect = 2.091e-111 Identity = 164/259 (63.32%), Postives = 202/259 (77.99%), Query Frame = 2
Query: 53 MATLTEKAEWKKLQQHYDGEAKTFHMRKLFQDDSNRFNKFSKTLSTPEGDLLVDFSKNIITEDTLSALFNLARACDVEEMRNKMFAGEKINITENRAVLHVALRNRSNKPILVDGNDVMGDVNAVLAQMRSFTKDVRSGTWKGYSGEVITDIVNIGIGGSDLGPLMVTEALKPFVD-GPKAHFVSNIDGTHMAETLKKLKPESTLFIVASKTFTTVETITNAKSARSWLLKAAKSDDAVAKHFVALSTNKDKVSEFGID 826
MA LT +++KLQQ Y ++R+LF + +RFN FS TL+T G +LVD+SKN++TED + L +LA++ VE R +MF GEKIN TE RAVLHVALRNRSN PILVDG DVM +VN VL +M+SF + VRSG WKGY+G+ ITD++NIGIGGSDLGPLMVTEALKP+ GP+ +VSNIDGTH+A+TL +L PES+LFI+ASKTFTT ETITNA++A+ W L+AAK AVAKHFVALSTN KV EFGID
Sbjct: 1 MAALTRDPQFQKLQQWYREHRSELNLRRLFDANKDRFNHFSLTLNTNHGHILVDYSKNLVTEDVMRMLVDLAKSRGVEAARERMFNGEKINYTEGRAVLHVALRNRSNTPILVDGKDVMPEVNKVLDKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLFIIASKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTNTTKVKEFGID 259 The following BLAST results are available for this feature:
BLAST of TCONS_00024396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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