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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024399 ID=TCONS_00024399|Name=TCONS_00024399|organism=Clytia hemisphaerica|type=transcript|length=1590bp
CCTTTAAAGAAGAAACGAAAACTAATATACGCTAAGGGTAAAACATTTGT
AGATTGGAAGCGTATCTATATCAAGTCGGGTAATGGTGGGAATGGTTCAG
CCTCATTTGTTCACTCAAGGGACCATAAAGGGGGGCCAGATGGTGGTGAC
GGAGGACGTGGAGCTGATGTCATTTTCATTGCTGATGATGCTTACTCCCA
ACTTTCTCATCTGGAGCATCAATACCGTGCTAAGAATGGAGGGAATGGTT
CCAAGAAAAACAGGCATGGAAAGAATGGAGAACACATACATATACATGTC
TTGGTAATGTCCATTTCAAGTCACCTACAAGAGTGCGCCCAAGAGAGTTC
ACAGAGGGAGGAACAGGAGAAGAAATATTTGTAGAGTTGGAACTGAAATC
AATCGCTGATATTGGCTTGGTGGGCTTTCCGAATGCTGGTAAATCTTCTC
TCCTCCATTGCATTTCACGTGCAACACCAAAGATTGGAGATTACCCTTTC
ACAACATTGAAACCAAACATCGGTGTGATGAATTTAAAAGATGACTTGAC
TGTTTCAGTTGCTGATATCCCTGGCATAGTCAAGGGAGCCCACGAAAACG
TTGGTCTTGGACATGAATTCTTACGCCACGTTGAACGTTGCCATATGTTA
ATGTATGTTATGGATTGCTCATCACCGGACATGCTTTCCCAGTTCGAAAT
CCTGAAAAAGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCAT
CCATCTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGACGAAATG
AGAAATAACATACAACAACATGTAAACATGCCTGTTGTCCCACTCTCTGc
taaattcaatcaaaatattgaaGAGTTGAAAAGTCTTATATTGCAGAAAA
GGAAATTTAAGCATACTAGCTAATgagaaaagaaaaacgaaaaatagaTT
ATATGTTATGGATTGCTCATCACCAGACATGCTTTCCCAGTTCGAAATCC
TGAAAACGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCATCC
ATCTTCATAGCTAATAAAATCGATTTGATACAAGACCAAGACGAAATGAG
AAATGACATACAACAACATGTAAACATGCCCTTTGTCCCACTCTCTGCTA
AATTCAGTCAAAATATTGAAGAGTTGAAAAGTCTTATATTGCAGAAATGG
AAATTTAAGCATACTGGCTAAtgggaaaagaaaaatgaaaaatagattaT
ATGTTGTGGTTTGTTCATCACCGGACATGCTTTCCCAGTTCGAAATCCTG
AAAAAGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCATCCAT
CTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGACGAGATGAGAA
ATAACATACAACAACATGTAAACATGCCTGTTGTCCCACTCTCTGAGTAA
ATTCAGTCAAAATATTGAAGAgttgaaaaatcttttattgCAGAAATGGA
AATTTAAGCATACTGGCTaatgagaaaagaaaaatgaaaaatagattatt
taggttgtattttatttcttttaaagtatGATGTTTGGTG Run BLAST on NCBI transcript from alignment at sc0000491:51610..58399- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024399 ID=TCONS_00024399|Name=TCONS_00024399|organism=Clytia hemisphaerica|type=transcript|length=6790bp|location=Sequence derived from alignment at sc0000491:51610..58399- (Clytia hemisphaerica)
CCTTTAAAGAAGAAACGAAAACTAATATACGCTAAGGGTTGGTATTTATG
ATGTAGTTTATTTTCTATTGTCTAAATAATAACTGTAAGTTGGTCTAATA
TCGACATCCCTCCTTTAATTCCGACACCCTTCTTTAGAGACAGGAATAAT
ATGAAAGCTTGAATCACTGATTGAAAAAGGATTATTCCTCTCAGACCACT
AAGCAAAGAAAAACAGTTTTAACCTTTCTATCAATTTCAGGTGATAAAAA
GGGTGTCGGAATTAGAGGAGGGGTGTCGACATTAAGTTACGTAAGTATAA
AGCTAATTTATTGTATGTTCTGTGATTGAAGACCTTGGTTTGAAAACTAT
AATGAGAATGCAACCTTTCCTTAATCCTAATTTGTTGATTACAAATTCCA
TTGCATTTTTCATTTTGCCAGGTAAAACATTTGTAGATTGGAAGCGTATC
TATATCAAGTCGGGTAATGGTGGGAATGGTTCAGCCTCATTTGTTCACTC
AAGGTATGTATAACGTATTCCTATTTGAATCGAGACATTCTTATATAGAT
ATACACAAAAACAATAACATATCATATAAAAGATGTGCACTAGAAAGGTG
TCATCAGCGTTTTTTGGAGCTCTTTGTTTAAAAAGCAATTGAAATAACAA
CTTTGAATTTGAAGACCCCCTTTTTAAACAGCTGTTTGTAGTAAATTTTC
CAATTCTCACAAATCAAATATTATAACAGTGTCAAATGTCAAATGTCAAA
TCAAGTGTCAAATGGAGGGGTTGCCAGTTCAATTCCAAGCTAGGTTAAAA
ATTAGATAATCAGACCCTTGGACAAATGGGAAACGGGGCTAAACTTAAAA
TGTTTTTGCTTCTTTTTTATGAGAAAAAAGTGTAACCAAGATAACAATGA
TAGGTGTTTATTGCCTGGCACTAAGCACTCAAAAATATTTTGAATATCAA
AAGAGTGGACTGCGTGGATGAGTAGCAAGTCACCAAGCCTCTTCAAATGA
ATGTAACAACCTCCTTGAAAACAAAAGGAAAGGTCAATTATGGACCAATT
CTTTTAGAGAAAAAAATATCTTGATTTCTATTCTATTTTAATTAATTTGT
TAGCTCATTTTAGAAATTTAATAGGTCTTTGATCTCTCTGATCAGTCTGA
ATTCTAATTGAGAAAATTATATTAAAAAAGGAATATGTGAAATTCTTTCA
TTACGCCATTAGAGCTCAAAAAACACCAATGAGACCTTCCTATGTGCACA
TCTTAGGAATAGTTCAATTCAAATAAAAACGTTATATAATTATTTTTGAA
TTGAAACTAATGAAACATATGATTCTCATTTTACTCTTAAAATAATTATA
AATGCTTTCTTGCAGTTTCTTAAAATATTTTTTTTTCAGTTGGTCCCTTT
GATTGTGGTCTTTTTTCTAAAACGAAATTCATTGCTTCAAATTAGCTCAT
TGAACAAATTTGATTTTTTCTTCATAAGGGACCATAAAGGGGGGCCAGAT
GGTGGTGACGGAGGACGTGGAGCTGATGTCATTTTCATTGCTGATGATGC
TTACTCCCAACTTTCTCATCTGGAGCATCAATACCGTGCTAAGAATGGAG
GGAATGGTTCCAAGAAAAACAGGCATGGAAAGAATGGAGAACACATACAT
ATACATGTAAGTGTGTTAATATGTTTTTATTGTTTTTATTAAATGGNAAA
TGGAGAACACATGCATATACAGGTAAGTGTGTCAATATATTTTCTTATTG
ATTAAGTGGAATGTCCTTGTTTATGTTTTTCTGTAGAAATAATTTTGAAA
CTACTTAAAAGCTACTTTGAAATATTTTTGTGGTCATGCTTCTCTAAATA
TTAAAATATTATAAGCAACATAAAATATAAACATTGTTCGAGACATGTCC
TGCACGTTTTTTTTATAAGGAACTTTAACTTGGCTCCAAGTCTGGATTTC
CTTATTTTTCCAGAGAATTTCAGCCTCAAAGTTCCTTAACGGGGCTCTTA
TTTACTAAGCTGCCAAGTTTGGATTAATAGGTTACTTTGTTAAACAATGG
ACTACAATACAGAAAAACGCGTTTTTCAACATTGTTTTGTCAATATTTAT
AAACGTTTTGTTTAGATTTTTGTAAACGCGTACAAGTTCAAGTTTAACTT
GTACTGTTTCTTAACTTTTTTTCTTATTCTCAGCCTGAGCAGTTCCTTAA
CAATTCCTTGTTTTTTAAACCATTTTCAGCCTCAAGTTCCTTATAAACAA
CGTGTTCCTTATAAAACAAAGACAGCATGTGTGATTTTTAGATTTTAGAT
TTTTGATTTGGGATATAGTTTTTTTTGTAACTATTTTTATGTGCCTTTCA
ACTGATCCAGTGACAACACTTTTTTGAATTCTTTACACTATTGAAACATC
TTTACATTTTTATTTTGGCTGCAGATCCCCGTGGGTACTGTGATTACGAA
CTCAAATAGTGACAAAGAACTAGCAGATTTAACGAGAAAGGGAGAAGCAT
ATACAGTTGCCAAGGGTGGATCTAAAGGTAGGCACATCACATCTACTTTG
GAGCAAAATCGACTATAATTGCAAGGTCAATTTTCTTTCTTATTATGTTA
TTTCCATTGCATGACTTTGTAATAATTCTTCATTAATTTTAATGATTAAT
TAATATAAATTAATCATAATTTTTAATTTAAGGCCTAGGGGGTAATCCAG
AAGAAAGCAACTTATTAATTAATCTTTTGTGATTCTTTTTTCTTTACGAG
ATGATAGCTGTGAATGAAATAGTTGTTTTGCATTTTTGGTAACTTTTAAA
AGGTCTTGGTAATGTCCATTTCAAGTCACCTACAAGAGTGCGCCCAAGAG
AGTTCACAGAGGGAGGAACAGGAGAAGAAATATTTGTAGAGTTGGAACTG
AAATCAATCGCTGATATTGGCTTGGTATGAGCATTTATTTGAATAGAGAA
TTAAAAATGACATCACTAGCCCCCTGTTGCAATGAAATTGCGTCAAAANT
GAAATCAATCGCTGATATTGGCTTGGTATGAGCATTTATTTGAATAGAGA
ATTAAAAATGACATCACTAGCCCCCTGTTGCAATGAAATTGCGCCAAAAA
TGATTTTTTTTTGTCCAATCTCTCAAAGGAATGCTCTAAATAAGTTTGAG
TTTATCAACCCAGTGATATTCATAATGGAAGTTAAATCGTAGCTTGGATC
ATGAGATTTACGTTTGGCTACGTTTCGAGAGATTCTTCTCCCATCATCGG
GAAATGTAGAGGATGTTTTCTCCACTGTTTGTACTAAGACATTCTGTTAT
GGCGCGCCAAAGCGGAAATAAATACTATCTCTCATTTCGCGACACTACCT
TTCATTTCACGACACTATCTTTCACTTTGCGGCACTATCTTTCATTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGCGGCACTATCTTTCATTTCGCGACACTATC
TTTCATTTCGCGACACTATCTTTTATTTCGCGACACTATCTTTCATTTCG
CGACACTATCTTTTATTTCGCCACACTATCTTTATTAAAACGACACTATC
TTTTTTAAAACGACACTATCTTTTTTAAAACGATACTATCTTTCCAAAAA
ACATTATCTTAATTGAAACAATACTATCTTTTTTACGGGATACTATCTTT
TTTATGGAAGCCGAGAAGTGCCATCGACAAAAAAATATTTAATTTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAGTGCCGCGAAATGAAAGATAGTGC
CGCGAAATGAAAGATAGTGCCGCGAAATGAAAGATAGTGCCGCGAAATGA
AAGATAGTATCGCGAAATGAAAGATACTATTTATTTCCGCTTTGGCGCGC
CATATTCTGTACCCATAATTATCAAGTGTAATTTCCTTGCAAGGTGTGAA
TCCCCATGTTATCATAGTTGTAAGGTAAAATAGCTCTTGAACTTATGAGA
TTACTCATTACTGTGATTTCCATTTTGCCTCTCTGTTCGGTTGGGAACCC
AAATATTCTCTCAAATGAACTTTGTTTGCATTTATAGGTGGGCTTTCCGA
ATGCTGGTAAATCTTCTCTCCTCCATTGCATTTCACGTGCAACACCAAAG
ATTGGAGATTACCCTTTCACAACATTGAAACCAAACATCGGTGTGATGAA
TTTAAAAGATGACTTGACTGTTTCAGGTTTTTATCTTTCGTTTCCTTGTG
TTAACACATTTCTGCCTATTACTTCTTAGTAACATTACCTGACATTCTAA
GAATTTCATAAAAGTTTGCTTGATTTTGCTCCTCAATTTCTGAATATATG
GGGTTTCAAATAATTTTCATGACTTTTAGTGGATCATGTAAATTTGAGAT
ATTTTATTCTTGTTTACTCATTAAAAAACCCAAATTATTTTTATTTGTAA
CCGTTTAGTTGCTGATATCCCTGGCATAGTCAAGGGAGCCCACGAAAACG
TTGGTCTTGGACATGAATTCTTACGCCACGTTGAACGTTGCCATATGTTA
ATGTATGTTATGGATTGCTCATCACCGGACATGCTTTCCCAGTTCGAAAT
CCTGAAAAAGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCAT
CCATCTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGACGAAATG
AGAAATAACATACAACAACATGTAAACATGCCTGTTGTCCCACTCTCTGC
TAAATTCAATCAAAATATTGAAGAGTTGAAAAGTCTTATATTGCAGAAAA
GGAAATTTAAGCATACTAGCTAATGAGAAAAGAAAAACGAAAAATAGATT
ATATGTTATGGATTGCTCATCACCAGACATGCTTTCCCAGTTCGAAATCC
TGAAAACGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCATCC
ATCTTCATAGCTAATAAAATCGATTTGATACAAGACCAAGACGAAATGAG
AAATGACATACAACAACATGTAAACATGCCCTTTGTCCCACTCTCTGCTA
AATTCAGTCAAAATATTGAAGAGTTGAAAAGTCTTATATTGCAGAAATGG
AAATTTAAGCATACTGGCTAATGGGAAAAGAAAAATGAAAAATAGATTAT
ATGTTGTGGTTTGTTCATCACCGGACATGCTTTCCCAGTTCGAAATCCTG
AAAAAGGAGTTAGATCTTTACAAAGCTGGACTGTCAACAATATCATCCAT
CTTCATAGCGAATAAAATCGATTTGATACAAGACCAAGACGAGATGAGAA
ATAACATACAACAACATGTAAACATGCCTGTTGTCCCACTCTCTGAGTAA
ATTCAGTCAAAATATTGAAGAGTTGAAAAATCTTTTATTGCAGAAATGGA
AATTTAAGCATACTGGCTAATGAGAAAAGAAAAATGAAAAATAGATTATT
TAGGTTGTATTTTATTTCTTTTAAAGTATGATGTTTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024399-exon-sc0000491-1575043694:58363..58399 | TCONS_00024399-exon-sc0000491-1575043694:58363..58399 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1575043694:57897..57978 | TCONS_00024399-exon-sc0000491-1575043694:57897..57978 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1575043694:56744..56921 | TCONS_00024399-exon-sc0000491-1575043694:56744..56921 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1575043694:55476..55597 | TCONS_00024399-exon-sc0000491-1575043694:55476..55597 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1575043694:52874..53012 | TCONS_00024399-exon-sc0000491-1575043694:52874..53012 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1575043694:51610..52641 | TCONS_00024399-exon-sc0000491-1575043694:51610..52641 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1510915933:58363..58399 | TCONS_00024399-exon-sc0000491-1510915933:58363..58399 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1510915933:57897..57978 | TCONS_00024399-exon-sc0000491-1510915933:57897..57978 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1510915933:56744..56921 | TCONS_00024399-exon-sc0000491-1510915933:56744..56921 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1510915933:55476..55597 | TCONS_00024399-exon-sc0000491-1510915933:55476..55597 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1510915933:52874..53012 | TCONS_00024399-exon-sc0000491-1510915933:52874..53012 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1510915933:51610..52641 | TCONS_00024399-exon-sc0000491-1510915933:51610..52641 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1491911889:58363..58399 | TCONS_00024399-exon-sc0000491-1491911889:58363..58399 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1491911889:57897..57978 | TCONS_00024399-exon-sc0000491-1491911889:57897..57978 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1491911889:56744..56921 | TCONS_00024399-exon-sc0000491-1491911889:56744..56921 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1491911889:55476..55597 | TCONS_00024399-exon-sc0000491-1491911889:55476..55597 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1491911889:52874..53012 | TCONS_00024399-exon-sc0000491-1491911889:52874..53012 | Clytia hemisphaerica | exon |
| TCONS_00024399-exon-sc0000491-1491911889:51610..52641 | TCONS_00024399-exon-sc0000491-1491911889:51610..52641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000491 | supercontig | sc0000491:51610..58399 - |
Blast
BLAST of TCONS_00024399 vs. Swiss-Prot (Human)
Match: MTG2 (Mitochondrial ribosome-associated GTPase 2 OS=Homo sapiens GN=MTG2 PE=1 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 5.276e-49 Identity = 82/166 (49.40%), Postives = 119/166 (71.69%), Query Frame = 3
Query: 381 VELELKSIADIGLVGFPNAGKSSLLHCISRATPKIGDYPFTTLKPNIGVMNLKDDLTVSVADIPGIVKGAHENVGLGHEFLRHVERCHMLMYVMDCSSPDMLSQFEILKKELDLYKAGLSTISSIFIANKIDLIQDQDEMRNNIQQHVNMPVVPLSAKFNQNIEEL 878
+ LELK++A G+VGFPNAGKSSLL IS A P + YPFTTLKP++G+++ + L ++VADIPGI++GAH+N GLG FLRH+ERC L++V+D S P+ +Q + LK EL++Y+ GLS +ANKIDL + Q + + ++ H+ V+ LSA +N+E+L
Sbjct: 217 LHLELKTVAHAGMVGFPNAGKSSLLRAISNARPAVASYPFTTLKPHVGIVHYEGHLQIAVADIPGIIRGAHQNRGLGSAFLRHIERCRFLLFVVDLSQPEPWTQVDDLKYELEMYEKGLSARPHAIVANKIDLPEAQANL-SQLRDHLGQEVIVLSALTGENLEQL 381
The following BLAST results are available for this feature:
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