TCONS_00024460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024460
Unique NameTCONS_00024460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024460 ID=TCONS_00024460|Name=TCONS_00024460|organism=Clytia hemisphaerica|type=transcript|length=3284bp
ttttgattccTTTTACAAGGAATTGCTCTACTACCTGAGACTTGTACGAT
TTGAAAGTTAGTTACAGTTGATGCGATGTTTTCACAAGAACAGCGATGTC
AATTTGGAAAACGCCATTTTAACGCCTCTTCGTCCGACAGAACAACTATC
ATGACCAAAACACACGGCGCCGATCTTGACATCATCTCACAACTTCTGCT
GGAGAAAGAAAAGGATTTGGACATGGCTGCAAAAATTGGACAGTCTTTAT
TGCAACGAAACAAATCTCTCTTGGTGAAAATCGAACATATGGAGGACTAC
CTCGTCAAAAGCAAAGATAACGAAATGCAACTAGAGCATGACTTACGGAA
CAAGAATGAATTTGCTCGAATGTATTTTGAAGATGATCAACAAAGTTACA
ATTCAAGCAGTTCCAAAGATTGTGACGACGAAGAAATCCGTTCTTTGACC
AATCGTTGTCGTGCTTTGGAAAAAGAGAATCAAAACCTGTTTACTGAGGC
GTTGAACATTCGAGAATACACAGATGAATTTGAAGAGAAGGAAGAAGGGC
TGGTACTGGATTGTATCGAACAATTATCGTCGGCGAAATCACAGATCACG
CAATTGACGGATGAGATAGCGCAGAAGTTTGAAGATAACGTCCAGCAACA
AGAAGAAATCACTCAGTTGATCAACATGGTCGTCGAACTacagaagaaac
aaaaacagCTGTGTGTGGACAATGACGATTTACAAGGACAATTGATCGAA
GCTGAAAATGATAAAGACAGTCTGAAGCAACAGCTGGCCATCATGCGTTC
GAAATTCGAAGAAACTTATGAAATGTTACAAGAGAACCAACAAGAGATTA
AAACACTGAAGTCACGGTTTGAtATGACTACATCATCAAATCCATCTGAT
TGGTTGAACGATTCTGGAAATTCACTGGCTCTCCAGGACTCGCTAGCCAA
TGAGATTGAAGAATCTGTTCGTCGTGATCTAATCTATACTCAAGACCGAA
GgaaACAAAACAAGAAAGTGTTGGAGAACGTCCGATATTTGAATGTTCGG
GGTGCACCGAGTTCCATTTCAACATCCGGCCGAACATCACCGGTGTCCAA
TTGGAGTCTGGCGTCCGATGAACGTTCAGAAACTATGTCCACCGTCTCCA
ATATTGATTGTGAAAGTATGAAATCgaagaaaaatgtgaaaaaattacaa
atcgtTAAACCCATGGAAGGGTCAGACACGTTAAGTAAATGGCATAATCT
GGCCTCCCAAAACGTGAAGGACGGTTTCAATGTCTCTGATGTCTCACCGA
CGAAGTCTGATGCACCACAAGCGATTGTTGATAGTGACACTTCGACAGCT
GAAGAGAGTGACCACGATAACAATGGTCAAACTGCACACAACATTGACCC
TTCAGCTCCAACTGCCCACAAGAAAACGCCGACTATTCGGAAACCGTTAA
AACCTAAGAAACAGAGTACGCCGACCAGTGTAAAAAATAGCGGCGGCGGC
AATTCATTTTTGAAAGGATTAGAGACACCTGACACAACCAAACGAACCAT
ATTGACGCGAAATTCGTCAGCGATGAACTCCTTACGTCAAGGACGGCGTA
TGTTACGTAGCAAAGATAACAATGGGCGATCCAAAGCGGAAGTTATTGAT
ATGATCGCAAATGCAATGAATAAAGCCAACGTAGAAGCGCAAGCGGGGCA
ACGTATTTTGTCTTCCATCACAAACAGTACGTCGTCAACTCCACGCCGTG
AAAGCATACGTCAGCGCGCGGAAACGTTGAGTAAATCACCCGATATTCAA
GAAATGCCGACCGTGacaaaagttttagaaaaagtcGCACACAATGTTGA
AGCCCTCGGTTTTTCTTCCTCTGACTTGGAATCAGAAATCGATGACGCCC
CACCACGCCCGTTTGATACTTTACCACCTCAGGGTGTTCAGACTAGTTTT
AATTCCAATACGTCGATTGTTCAAACTGAACTGAACAGTGTAACTGGACC
TTTAGGTTTATTAAGCAGAGCGGATTTGAATGAACCTAACCCGATGTTGA
AAAACAGACTACTGCGCATGTCAAGTATCGATANCCAACGACCACAAATA
CGAAGTTCGGTTCTGCGACAGACATTGGACAAGAAACTCCTCCACCCCAA
AAGCCACAAACTTCCAAATCAGTAGAAACAGGCTTAGACAGTGTGAGAAC
TCCTGATCAAAACACGAGTGGAGGAGCATTCGGGTTTTTCTCCTCCTTCC
TTGGGAAGCTTTCATGATTGGATGTTCGTTCAGTTTTGTTATTTACTGTC
ATTTGAATGAAATTGAGAAAATCAACTTCTGTCAAGTGCCATttgaatag
atcttatcggagtttttgatttttctaaaaacgcggtgcattgtgggatt
gtttcgggaatATTActatagaattccctcgaggaattcctaagagattt
ctattgaaatactcccgaaacaatcccacaacgcatcgcttttttagaaa
aatcaaaaactccgataagatctattaaaGGGATATAACAGTACttgcaa
aatttgtaaacaaactgtatgcaacgggtacaaaatcaaaacaaatgtca
cgtgtcaaaataaaaaatcaaaccaaatatgactaattttgattgttcaa
ttgttttacaagttggTTTTGGACAcgttttttaattgttctctttaatg
acacctggttcgcgcaatgtttacattttactacttttatgtccctttaa
agatgCAACCGGACCGTCGGGTACATACATTTGTAATTGTAAATATGTAT
TCCAATTCGAAGAGAAATCGTTCGACATGAGTATTCCTTCCTTGAAAATT
CGTTacgttttttgaaatcgtgtttttcgcaatttttgagACAGGTTAAA
AACCTATTTCATCTTGTATGAAGCATGATCAAGTAATTTTGAAATAGACC
TTGCTGAATTCGAAATTTCTCTTGGTGTTGTAGGGACTTACTCTTTACCG
TTTTGTAACTTTATTTTTCGTTTGAAAACTCGACAATTTTacagtttaaa
aaataaaatgagaattatatttattatatCAAGGAGacttttttcgatat
ttttttgtgattagaatttttatattttaagatTTGTCAGCAATGTATGA
TTTTGAAGATTGGTCTTGNCCTTTTATTTTAGAGAAGTCGATTTTATGac
agggttcagacagaccttcgaaaataaaattccctgagtttccctgaatt
ttaatcaattttcaaaggttttttccctgagaaa
Run BLAST on NCBI

transcript from alignment at sc0000499:194024..203342+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024460 ID=TCONS_00024460|Name=TCONS_00024460|organism=Clytia hemisphaerica|type=transcript|length=9319bp|location=Sequence derived from alignment at sc0000499:194024..203342+ (Clytia hemisphaerica)
ttttgattccTTTTACAAGGAATTGCTCTACTACCTGAGACTTGTACGAT
TTGAAAGTTAGTTACAGTTGATGCGATGTTTTCACAAGAACAGCGATGTC
AATTTGGAAAACGCCATTTTAACGGTGAGAGTTTCTGGTATTTTCCCTCT
AAGATATAATTCATAGGTCTCCATAACTTGGACACGCACggagaacacaa
atttgttcgagttatggaaatttcTAAGAAACCATGTATCTTGTTCGAGT
TGACGAGATATATTCGGGTTATAGAGGTTCCAGTTAAAGAGACTGTGCTG
TATTTTATCCACTAACCAAAATTACTCCTCAATAATTTAAAGTTATAAGA
GGATTTAATATCTCATAGGTTTTAATTTCGAGGATGAGACCCAAGTCCGC
GAAATGATTTCTGTGACATTTCATACCAGAagtataattattttttttct
acaaaaatcatttttcctgCTGTAGATCTGTATCCTGCGGACTGAAAACT
CTCTTGATCATTTTGAGGTTGAAGAGAAGTTCTTTTTGGTTTTCCGTATA
TTAAGATTTCTTCCTTTCTTTCATTTACTTACCATCTTGTGAGTCTGCCT
GTGTTGCTCTCCCGTTGAGTTCATCTTTCAAATTCGattcaatttatttt
gaaattcataCAATTACATAGTGATCATGAATAATGGAAAGATTTTGCTT
TGTAAGCACactatatttttaagaaagtcAGATCTTTTACACAAAATACG
AAGGTTGTCTCGGGATATTACAATATGCTTTATTAGGCCTGAAGTCTCCT
AAGGAGCAAACGTCATCCTCTTTTTGTTGACTTACAGTTTCGTCCGAATG
AACATTGAACATTGAACACGAATTCGCTTACGAAGCACTTTCTTCCCTTA
GGGAGAAgatgtttttttcttgttttcttccCTCGTCTCTATTTTCGTCT
TTCAATAATATATTCATAATTGTTGTcttctttcttatttttatctCCTC
ACAAAATAATAATATCTCCTTTGCACTTTGAATAGacgaaatttctttaa
aactcTACTGGAAAACTTGAGAAGAAAAATCAGAGAACGTTTGTTTTTGT
GTGTTTGATGTTTTGGATGCTACCTATCTTGTAAAGGGTGTAAACACTAT
TCGAAAGAACTTTCTCTTGTGATAGTCATTTTAAAAGCTGGAGCTTTTAC
CATATTTTATGATAACAGCATAGTTGCTGAAGATATGGAAAAATCTCCTA
AGGTTTCTTAAAAATCTGTTGAAACAAAGATGTTAAACACGTCAAGTGCG
ACGTCCACTTCTTTTGGTAGTCATAATGATACAGAGGAGGATTCTGGGAT
ACTATCTTCTTCTCCTGATGAATTATGGGAAATGGGAGATGAAGAATATA
CCACGTGGCTGATGAACGAAATGTGTAGGTGCTCCGAAACGGCTTTAAGG
GTTTCGTATTTTAGCTGTTTGCACATCTCTGTCTAAATTCGGTTTTACTG
TCAAACTAATAAATTCTACAAAATGCCACTCATTTGGCATGACAGTTTGT
GTTTGTGAAACTTAATAGTTAAAATAGTTTCTGCAAATTGTAAATTTCCA
GTCGATTGTTAATATCTTCTTTTTCATACTTTCCAGCCTCTTCGTCCGAC
AGAACAACTATCATGACCAAAACACACGGCGCCGATCTTGACATCATCTC
ACAACTTCTGCTGGAGGTAATGTTACCGGTCGCGgacattttatgtttta
tatacCTGAGAATAGTTTCGTAAAAGTACATCGTCtctgttttttcgaaa
atctaagaaTATGTTCTATTTTGAGGTGAAATAGGGAAATTAAGAAGCTG
AATTTCTTATCTGCTCccttcaaaaatgatcagtcGGGACCAACCTACTG
GGTTGGACATATAATATGACAGAATACACAATTTCACtcctaaggggggg
gggctatacACTATTTCTCTGTTTtccaaacaaaattaaaaatgaaaaag
aagctGAGTTATGTCTCAAATTTAGTGATTTCTGAAGAAGGAttgttttt
gcaaaaaaaaactagaCAACGGATAAACGTTGTGTTATAGATTTGACAAT
TTAGTTCTTTggtattttagcgattttaacaTCAAAAGGTGTTACCTTCT
TTTGTCTCCTACTAacctctttttttttattatatttttgtagAAAGAAA
AGGATTTGGACATGGCTGCAAAAATTGGACAGGTATAAGAAATTTCTGAG
TACATTTTTTTTATGTTCCAATTGTTCGACCTTGCATATTAATCGAGCAT
GGTTTCACTACTTTTAAGGCATTTTAAATTCTACGAAAATGCCCCTTATT
AGTTATGTGCAGAGTTTTGTGGCTGTCTCAATTCTCTTTGTCCTCTCAGA
AAAGTCCCTCGAAGCCCTTCCGTTTTCAGGCTTTGTTGCAAATGGCTCTT
TTtgcaatgaaaaatttttttttctcgaatttaaGCGTTTTACCATTCTC
TTTTCTGTTCATTTTTTTAGTCTTTATTGCAACGAAACAAATCTCTCTTG
GTGAAAATCGAACATATGGAGGACTACCTCGTCAAAAGCAAAGATAACGT
AAGATGTCCAGTTTCCTTTGAGTCGTCACCCCCGTCTCCAACCCAAAAGG
GGTTCACTTGGGTCATTCTTTGTCGAGTTTTGTCAATCTTGTTGCTTTCT
GAAGAGGAATTACTATTTTGAAAAGTCATGCTACTTAGCTTTTGAGGGTG
TTGATAAAAGCAAGCTGCCCCCAAAATAGCTAATAGCTTTTTTGACTAGT
TAAGACAAAAATAGCAACAAACACAAGGTCTAGTTTGATCGGCTCTCATC
TCGGTTCATCGGCATAACGTTATTAAAATCTTGTCATATTAATAAATAAA
AGATTTAAAGTTAGTATGACGTCAATAAAATATGACGTCAATAAAATATG
AGAAGTCTCAAGTTGCACTCGAAAGAATTAAAAAGTTATAGGTTTTTCGT
TCGAGAGAATGAGAACTTCGGGAACTGGTTTTGCTTTCCTGAATGTTACG
GGAAATTGAAAAGACCCGGGATAATGGAAATGTTATATATTCTGGTAAGT
TGTCAACGAACAAATATTCATTCCTCTAACTGTAAACAATTATGCAAAAA
ATACCACTCGATAAGAGAACTGATTTCAACtttctgttgtttttcttttg
tatagGAAATGCAACTAGAGCATGACTTACGGAACAAGAATGAATTTGCT
CGAATGTATTTTGAAGATGATCAACAAAGTTACAATTCAAGCAGTTCCAA
AGAGTAAGCATTTCACCAACCAGTTCCTACCTAACTCTTCTATTTGTCTG
AACTGCTGATGTTCGATTGCTGTCATTATACCAATCCTCAAATTTTTTTG
GATCTTCCTCTTCTGAAATGAGAATCTTCACTGACATCATCAGCAGTTTT
CGTAGTTTATTCATCTACTCGAGATATGTTAAATCATTGCTCAATATGTC
GAAACTTTAGTTGCTGcattatatttgtaaaattttcaaaagagagtTCT
TACTGGATCATCACtaggtttttcaaggtttttttgttATATCTTAATTT
CAGTTGTGACGACGAAGAAATCCGTTCTTTGACCAATCGTTGTCGTGCTT
TGGAAAAAGAGAATCAAAACCTGTTTACTGAGGTATTCTTTTCAACAAAC
CTGGTGGTTTAGTACTTTCCTAACTCATTCTTCCGTGCAAATAACAAGAC
AACTTAGAAACCAAGGGACGTAAAGTAAACTCTGTAAACTCAGTAAACTG
TATTATAGGTATTGAGATTTGTAATCCCGAGAACAAATTGAACCTGGTGA
TGAAATAGTTAGGTGAAAGCAATAATGGTGGGTCGGTTGCTTAATCGCCG
GGGCAATTTTAACTTTCACTTTACAATCTTTATTCAGGCGTTGAACATTC
GAGAATACACAGATGAATTTGAAGAGAAGGAAGAAGGGCTGGTACTGGAT
TGTATCGAACAATTATGTAATTACCTGTTACCATAAATAATTTATGTTGT
TATTGTATGTAAACTGCATTATTTGTCTCGTTTATCATACTGTCATACAC
TTCATCTGTGATGAAATCTAATTAGACCTAAGTTGtgtatgttttatttt
gaaatcatCCTTAAATCTTTCGTATTTTTCCAGCGTCGGCGAAATCACAG
ATCACGCAATTGACGGATGAGATAGCGCAGAAGTTTGAAGATAACGTCCA
GCAACAAGAAGAAATCACTCAGTTGATCAACATGGTCGTCGAACTacaga
agaaacaaaaacaggTTCCATTCAACAATGTTTTCACCCACATCCGCATC
CCCATATCTTTAGTTCGGATAACTTTTCGAAACCCTATTCCAATCTAAGT
ACTGCCCAGTATTGCCAGATTGTCTGGGATATCATCAAACCTGCTGGGTT
AAGCCATGCTTAGATTAATTCGTAAGGTTAAGAACGGATCTTTCTTCTTT
GAAGACATCATTCTTTCCTGAAACATTAACTTTCGTACATTTTCTCATGG
CCCGGAGAAATTCTCTTTCATCTTGGACATTCTAATTTACAATTTACTTG
AATCTTTTAGCTGTGTGTGGACAATGACGATTTACAAGGACAATTGATCG
AAGCTGAAAATGATAAAGACAGTCTGAAGCAACAGGTATGTGTGAAATCG
CAAAACATTTCAAGAGCTTCGCATAATGAGAAAGGAAATAAGGAAATAAC
CCCGTCCATGTGGTCCGCAATAGCTCTATCCTATAATTGGTTGCCTATCC
TAGGATTTTTATTATAAGGCACCTGCTGGTAGTgcactttgttgttgttg
aatatCATTTTCACCTTATTTGATATCCTAGGATAGGGAAATTATCGCAC
AGTTGACCCCGTGCTTGTGACAGTGCAGAGCAATGGTATATCGGAAACAC
TTTATATCCTGACCTATTCagtcatcaaattttgataatcatttttatcc
aacaaacCGATCAATACATAAAAGTTTGACCTAGCTTCTATTTTCTACCT
TAATACTGTTTTCACTTCACAGCTGGCCATCATGCGTTCGAAATTCGAAG
AAACTTATGAAATGTTACAAGAGAACCAACAAGAGATTAAAACACTGAAG
TCACGGTTTGAGTGAGTAAAGTAATGTCTTTACAAAGATGCCTTTTTTCT
CGTGTCTTTACTGGCAAACGTTTtaataaaagtaaaagtaaatgGATGTG
CACTCTCACTAATTTGCACTCGAATAGaagtctaatttgttcgaattaca
gaaaaaattcgaattatCGAGAGTATATTAGATAGGTTTCCCCTTGACAG
GAACTGGGAActagttcgaattagcgagagtccgGCGGCGCACATATTTC
TTTATCCCAGAAATTGTTCCggacaaaagtaaaaaaaaattcgttaATCC
CCGTCCCGTCCTACGTATAACTAGCTGGTACAATTCGGGAAGGTTTCAAT
TACGGCAATTTCTTATTATTTTCATCCAGTGTGATATTCTCTCCTCACCA
TGACgacaattttatttcatttcagtATGACTACATCATCAAATCCATCT
GATTGGTTGAACGATTCTGGAAATTCACTGGCTCTCCAGGTAGGATGATA
TTTATCATTGCAGATAGATTCAGTGTTgcttttttattaaattaaacAAA
TTAATNTCCAGGTAGGATGACATTTACCATTGCAGATAGATTCAGTGTTG
CTTTTTATTAAATTAAACAAATTAATCGAATCATATAAtttctgtttcac
ttttttagGACTCGCTAGCCAATGAGATTGAAGAATCTGTTCGTCGTGAT
CTAATCTATACTCAAGACCGAAGgtaatcatttattttttacaaacgAGC
AAAAAATCTTTCTCTTGAAAGATCAGCGGTGTGAACTGTTCATTGATTTT
CGCCCATGACTTTCAAGTGCATCTAGAATTCTtttgcataaaatttctga
atttgcattctttttttttctcaggaaACAAAACAAGAAAGTGTTGGAGA
ACGTCCGATATTTGAATGTTCGGGGTGCACCGAGTTCCATTTCAACATCC
GGCCGAACATCACCGGTGTCCAATTGGAGTCTGGCGTCCGATGAACGTTC
AGAAACTATGTCCACCGTCTCCAATATTGATTGTAAGTTGcctgttttat
ttatttattccaTTTTCTCCAGCTTACTTTTAATACATCGACCTTGGAGT
TATGATCTTGACAATACAAATGNCTCTCCAGCTTACTTTTAATACATATC
GACCTTGGAGCTATGATCTTGACAATACAAATGTTACATTTACGTTACGT
TTTTTTATCATTGGTTTTAAGTCTGAATATCCGCTTTaagcattgggctc
ttccagaaaaaatccgttcatggggggtggaggatgaattgtccaggggt
attgaaaaaataccaaaaaattgcaatgtccagggggtaaNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNtgtgtccagggggttaaaaatc
aaaatgtccaggggtaattttttgtgtccacggggttgatttgatgtttg
tccaggggtataacctgtgtccagggggttaaaaatcaaaatgtccaggg
gtaattcatgaaaaaaataatatatcctccacccccaccCATGAACggac
tttttctggaagagcccattattcGAAGATCTTCATTAGGAAGGAACAGT
TTTCACTTATTTTTCATTATAAGCTGCCTTATTCTTTAGGTGAAAGTATG
AAATCgaagaaaaatgtgaaaaaattacaaatcgtTAAACCCATGGAAGG
TAATGCATacattttttccttttaaaaccCAATAAGTGCCACTGGCAGCA
TATGAGAATTCTCATTTTCTCTTCTGTCTAGACCTAGGAGCACCGTAAAC
CATGATGTCCGGCCCGAAAACTTAGTCCCGTTACTTTTGCTCGTGttttg
gaacaatataattCCTTGCCCGCCTTCATGGTCCTTATCTTTTACTTTTT
CTACACTATTTCTTGGTCCAAATCACAATTACATCTCATATTCCTCTCAA
ACAGGGTCAGACACGTTAAGTAAATGGCATAATCTGGCCTCCCAAAACGT
GAAGGACGGTTTCAATGTCTCTGATGTCTCACCGACGAAGTCTGATGCAC
CACAAGCGATTGTTGATAGTGACACTTCGACAGCTGAAGAGAGTGACCAC
GATAACAATGGTCAAACTGCACACAACATTGACCCTTCAGCTCCAACTGC
CCACAAGAAAACGCCGACTATTCGGAAACCGTTAAAACCTAAGAAACAGA
GTACGCCGACCAGTGTAAAAAATAGCGGCGGCGGCAATTCATTTTTGAAA
GGATTAGAGACACCTGACACAACCAAACGAACCATATTGACGCGAAATTC
GTCAGCGATGAACTCCTTACGTCAAGGACGGCGTATGTTACGTAGCAAAG
ATAACAATGGGCGATCCAAAGCGGAAGTTATTGATATGATCGCAAATGCA
ATGAATAAAGCCAACGTAGAAGCGCAAGCGGGGCAACGTATTTTGTCTTC
CATCACAAACAGTACGTCGTCAACTCCACGCCGTGAAAGCATACGTCAGC
GCGCGGAAACGTTGAGTAAATCACCCGATATTCAAGAAATGCCGACCGTG
acaaaagttttagaaaaagtcGCACACAATGTTGAAGCCCTCGGTTTTTC
TTCCTCTGACTTGGAATCAGAAATCGATGACGCCCCACCACGCCCGTTTG
ATACTTTACCACCTCAGGGTGTTCAGACTAGTTTTAATTCCAATACGTCG
ATTGTTCAAACTGAACTGAACAGTGTAACTGGACCTTTAGGTTTATTAAG
CAGAGCGGATTTGAATGAACCTAACCCGATGTTGAAAAACAGACTACTGC
GCATGTCAAGTATCGATANCCAACGACCACAAATACGAAGTTCGGTTCTG
CGACAGACATTGGACAAGAAACTCCTCCACCCCAAAAGCCACAAACTTCC
AAATCAGTAGAAACAGGCTTAGACAGTGTGAGAACTCCTGATCAAAACAC
GAGTGGAGGAGCATTCGGGTTTTTCTCCTCCTTCCTTGGGAAGCTTTCAT
GATTGGATGTTCGTTCAGTTTTGTTATTTACTGTCATTTGAATGAAATTG
AGAAAATCAACTTCTGTCAAGTGCCATttgaatagatcttatcggagttt
ttgatttttctaaaaacgcggtgcattgtgggattgtttcgggaatATTA
ctatagaattccctcgaggaattcctaagagatttctattgaaatactcc
cgaaacaatcccacaacgcatcgcttttttagaaaaatcaaaaactccga
taagatctattaaaGGGATATAACAGTACttgcaaaatttgtaaacaaac
tgtatgcaacgggtacaaaatcaaaacaaatgtcacgtgtcaaaataaaa
aatcaaaccaaatatgactaattttgattgttcaattgttttacaagttg
gTTTTGGACAcgttttttaattgttctctttaatgacacctggttcgcgc
aatgtttacattttactacttttatgtccctttaaagatgCAACCGGACC
GTCGGGTACATACATTTGTAATTGTAAATATGTATTCCAATTCGAAGAGA
AATCGTTCGACATGAGTATTCCTTCCTTGAAAATTCGTTacgttttttga
aatcgtgtttttcgcaatttttgagACAGGTTAAAAACCTATTTCATCTT
GTATGAAGCATGATCAAGTAATTTTGAAATAGACCTTGCTGAATTCGAAA
TTTCTCTTGGTGTTGTAGGGACTTACTCTTTACCGTTTTGTAACTTTATT
TTTCGTTTGAAAACTCGACAATTTTacagtttaaaaaataaaatgagaat
tatatttattatatCAAGGAGacttttttcgatatttttttgtgattaga
atttttatattttaagatTTGTCAGCAATGTATGATTTTGAAGATTGGTC
TTGNCCTTTTATTTTAGAGAAGTCGATTTTATGacagggttcagacagac
cttcgaaaataaaattccctgagtttccctgaattttaatcaattttcaa
aggttttttccctgagaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013731XLOC_013731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024460-exon-sc0000499-1491911889:194024..194147TCONS_00024460-exon-sc0000499-1491911889:194024..194147Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:194024..194147TCONS_00024460-exon-sc0000499-1510915933:194024..194147Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:194024..194147TCONS_00024460-exon-sc0000499-1575043694:194024..194147Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:195660..195739TCONS_00024460-exon-sc0000499-1491911889:195660..195739Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:195660..195739TCONS_00024460-exon-sc0000499-1510915933:195660..195739Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:195660..195739TCONS_00024460-exon-sc0000499-1575043694:195660..195739Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:196217..196255TCONS_00024460-exon-sc0000499-1491911889:196217..196255Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:196217..196255TCONS_00024460-exon-sc0000499-1510915933:196217..196255Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:196217..196255TCONS_00024460-exon-sc0000499-1575043694:196217..196255Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:196544..196621TCONS_00024460-exon-sc0000499-1491911889:196544..196621Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:196544..196621TCONS_00024460-exon-sc0000499-1510915933:196544..196621Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:196544..196621TCONS_00024460-exon-sc0000499-1575043694:196544..196621Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:197229..197326TCONS_00024460-exon-sc0000499-1491911889:197229..197326Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:197229..197326TCONS_00024460-exon-sc0000499-1510915933:197229..197326Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:197229..197326TCONS_00024460-exon-sc0000499-1575043694:197229..197326Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:197627..197705TCONS_00024460-exon-sc0000499-1491911889:197627..197705Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:197627..197705TCONS_00024460-exon-sc0000499-1510915933:197627..197705Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:197627..197705TCONS_00024460-exon-sc0000499-1575043694:197627..197705Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:197961..198039TCONS_00024460-exon-sc0000499-1491911889:197961..198039Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:197961..198039TCONS_00024460-exon-sc0000499-1510915933:197961..198039Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:197961..198039TCONS_00024460-exon-sc0000499-1575043694:197961..198039Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:198207..198337TCONS_00024460-exon-sc0000499-1491911889:198207..198337Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:198207..198337TCONS_00024460-exon-sc0000499-1510915933:198207..198337Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:198207..198337TCONS_00024460-exon-sc0000499-1575043694:198207..198337Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:198634..198708TCONS_00024460-exon-sc0000499-1491911889:198634..198708Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:198634..198708TCONS_00024460-exon-sc0000499-1510915933:198634..198708Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:198634..198708TCONS_00024460-exon-sc0000499-1575043694:198634..198708Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:199096..199184TCONS_00024460-exon-sc0000499-1491911889:199096..199184Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:199096..199184TCONS_00024460-exon-sc0000499-1510915933:199096..199184Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:199096..199184TCONS_00024460-exon-sc0000499-1575043694:199096..199184Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:199599..199662TCONS_00024460-exon-sc0000499-1491911889:199599..199662Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:199599..199662TCONS_00024460-exon-sc0000499-1510915933:199599..199662Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:199599..199662TCONS_00024460-exon-sc0000499-1575043694:199599..199662Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:199832..199896TCONS_00024460-exon-sc0000499-1491911889:199832..199896Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:199832..199896TCONS_00024460-exon-sc0000499-1510915933:199832..199896Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:199832..199896TCONS_00024460-exon-sc0000499-1575043694:199832..199896Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:200048..200205TCONS_00024460-exon-sc0000499-1491911889:200048..200205Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:200048..200205TCONS_00024460-exon-sc0000499-1510915933:200048..200205Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:200048..200205TCONS_00024460-exon-sc0000499-1575043694:200048..200205Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:200963..201022TCONS_00024460-exon-sc0000499-1491911889:200963..201022Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:200963..201022TCONS_00024460-exon-sc0000499-1510915933:200963..201022Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:200963..201022TCONS_00024460-exon-sc0000499-1575043694:200963..201022Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1491911889:201278..203342TCONS_00024460-exon-sc0000499-1491911889:201278..203342Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1510915933:201278..203342TCONS_00024460-exon-sc0000499-1510915933:201278..203342Clytia hemisphaericaexon
TCONS_00024460-exon-sc0000499-1575043694:201278..203342TCONS_00024460-exon-sc0000499-1575043694:201278..203342Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:194024..203342 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.5737	2.3847	1.44022	0.985258	5.79871	3.89867	6.41947	8.48203	7.44632	9.01156	3.2048	5.77852	4.10012	5.02761	0.774992	3.64897	6.1751	5.87913	5.82765	6.41347	6.03212	6.25711	10.6387	11.1549	2.76109	2.80363	12.6243	7.43542	15.5892	15.408
Blast
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BLAST of TCONS_00024460 vs. Swiss-Prot (Human)
Match: TRAK1 (Trafficking kinesin-binding protein 1 OS=Homo sapiens GN=TRAK1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.136e-42
Identity = 122/341 (35.78%), Postives = 194/341 (56.89%), Query Frame = 1 
Query:  133 SDRTTIMTKTHGADLDIISQLLLEKEKDLDMAAKIGQSLLQRNKSLLVKIEHMEDYLVKSKDNEMQLEHDLRNKNEFARMYFEDDQQS-----------YNSSSSKDCDDEEIRSLTNRCRALEKENQNLFTEALNIREYTDEFEEKEEGLVLDCIEQLSSAKSQITQLTDEIAQKFEDNVQQQEEITQLINMVVELQKKQKQLCVDNDDLQGQLIEAENDKDSLKQQLAIMRSKFEETYEMLQENQQEIKTLKSRFDMTTSSNPSDWLNDSGNSLALQDSLANEIEESVRRDLIYTQDRRK---QNKKVLENVRYLNVRGAPSSISTSGRTSPVSNWSLA 1113
            ++R   MTKT+  D+D +++LL EKE+DL++AA+IGQSLL++NK+L  + E +E+ +   ++   QL H+L  K+E  + Y    ++S            N SSS   +   + SL  + + LE+EN  L +EA  ++  T  +EEKE+ LV DC+++L  A  QI  +++E+A+K ED  +QQEEIT L++ +V+LQKK K   V+N++L   L  A++ +  L  +L  +  K+ E  EML E Q+E+K L+++    T+S     L      L   DSLA EIE ++R++L   +         K+V E VR +N      S++ S    P SN S A
Sbjct:   99 AERVGQMTKTYN-DIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEASQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLG-----LFPMDSLAAEIEGTMRKELQLEEAESPDITHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSA 433
The following BLAST results are available for this feature:
BLAST of TCONS_00024460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAK12.136e-4235.78Trafficking kinesin-binding protein 1 OS=Homo sapi... [more]
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