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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024466 ID=TCONS_00024466|Name=TCONS_00024466|organism=Clytia hemisphaerica|type=transcript|length=4947bpRun BLAST on NCBI protein sequence of TCONS_00024466-protein >TCONS_00024466-protein ID=TCONS_00024466-protein|Name=TCONS_00024466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1122bp MGFRLFLVNLLFAMAIHETEGTVTSTLEDQVTDMSKALNDFVNTNLGVDQRun BLAST on NCBI transcript from alignment at sc0000499:132267..157627- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024466 ID=TCONS_00024466|Name=TCONS_00024466|organism=Clytia hemisphaerica|type=transcript|length=25361bp|location=Sequence derived from alignment at sc0000499:132267..157627- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000499:132267..157627- >TCONS_00024466 ID=TCONS_00024466|Name=TCONS_00024466|organism=Clytia hemisphaerica|type=CDS|length=80856bp|location=Sequence derived from alignment at sc0000499:132267..157627- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024466 vs. Swiss-Prot (Human)
Match: CAHD1 (VWFA and cache domain-containing protein 1 OS=Homo sapiens GN=CACHD1 PE=2 SV=2) HSP 1 Score: 144.436 bits (363), Expect = 1.794e-34 Identity = 195/786 (24.81%), Postives = 327/786 (41.60%), Query Frame = 2
Query: 1199 PWYPNLVNTKEGKEFVIVLDYSSKMKGDLLKQAKKVVHNLLRIIDGKDKIVLRIISGGNSIAPSEFD-CLK-FLTEAHPSVIKVLKDFVDRTGQT-GLLEYAKVFRDSFRLFGSSNKKKLF-------IL-----ITSGEHDESYSQVKEYYKNGYKKACQASVVIFLVQGSSTPLITRQEHEGLKQEGCDACNDQNCDSF---NKFQLVDIYPRY----NEADIRQQVAKIYKAFQNELGPPQLQFSMPYEDFYGLGTMIDACTRVVSDDNKLLGVLCLSFLSNELFGVTAEVANTKDAYPFLIDKSGTTYIHPYYINPELHASGS-RIDITNFETSIQFQNQVYNSMK-SGGEDEKSFKVESSVP-----LGTLGAKFESKNFTYIWRXXXXXXXXXXXXXXXXYKDDLQLQSSTTQGNE--LYHRLSLQDGIQDELCSHYGYIAIKDQPVVSIAPDSFEQPSVYYEKESKETVKTLQNYFNETYVENPTAFKSNTIRNEIRQAVMATNLMNKIWTG--DESNQRLIIKWRYIGMENGVFRIFPGIEIPE-FDPRQQQWYHLAETFPGKLVFTTPYKDSNDPSQASILSLSKQITEELSGVKQGS--GVIGMDFEFRYFQFLIERDLTLC---AGKVIRGTCSIINTDGFLLYHNGTDGDLYKHI-----HLVEKEPNVARKLL-QSGIMKKTSCIEYNDRLPRTIWFYSLD---DVT--VSQSDNGTFWLVPIKGTNLLLLFTKHSNVEKEQEKCECSKPSLKGEVLGKCREGVDEASCDCPC 3406
P Y + V + K V++LD+ + + L+ AK +L ID DKI +++ +++ D C K FL+ A + + FV + ++A F+ +F+L S+N F I+ ITS + E + N SV+I + + +E L+ +QN + ++ L I +++ V + Y N + + FS+P+ D G G +I ++ N LLG++ + + ++ +Y FLID G T +HP P L + DI ++E +F+ N + G + V SS+ L G E+ N +Y W+ V+ +SF + + V QL++ T + LYHRL L Q C H+ +A + P + ++ SF P YE S+ K + ++ +N + ++ +R VMAT+ + W + S+ I RYI NGV RI+PG + + FDP ++QWY A PG + T PY D ++++S I + + G V+G+DF RYF ++ L +C G IR C I+ G+L+ H T D H H+ KEP VA +L +KK C ++DR + + ++ D+T V S + L I GTN + + C C S+ + C +++ C+CPC
Sbjct: 216 PIYVSTVR-PQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKI--SVLTVADTVRTCSLDQCYKTFLSPATSETKRKMSTFVSSVKSSDSPTQHAVGFQKAFQLIRSTNNNTKFQANTDMVIIYLSAGITSKDSSEEDKKATLQVINEENSFLNNSVMILTYALMNDGVTGLKELAFLRDLA-----EQNSGKYGVPDRMALPVIKGSMMVLNQLSNLETTVGRFYTNLPNRMIDEAV-FSLPFSDEMGDG-LIMTVSKPCYFGNLLLGIVGVDVNLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQNILSLPLGSQIIAVPVNSSLSWHINKLRETGK--EAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYHRLDLLG--QPSACLHFKQLATLESPTIMLSAGSFSSP---YEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLISLTGPYLDVG--GAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIR--CFIMEDRGYLVAH-PTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQRFYKFNTSLAGDLTNLVHGSHCSKYRLARIPGTNAFVGIVNETC--DSLAFCAC---SMVDRLCLNCHR-MEQNECECPC 973 The following BLAST results are available for this feature:
BLAST of TCONS_00024466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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