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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024487 ID=TCONS_00024487|Name=TCONS_00024487|organism=Clytia hemisphaerica|type=transcript|length=3110bp
AGTGGAGTAttgtcaagcaaaaaaaattgaaaaagaaagaaattgaagat
gaaaaatgaagaagaaaaaaatcgatacttcttgtagaaatgtggtataa
ttaccattttcactgGAGTGATTCTTTAATCTTAGATGATCATcactctg
aaaaaacttttcaaaaatatccattctataaaaatatatcaaacaaagtt
tgttattggttgatcgacaaaaggctgtttttgtcgttttttactacttt
atagagtcaaccagcaataaactttgtttgatatcttttgattgaatgaa
tattttgatgatctaagattgaagaatcactcatgtgaaaatggtaatta
taccacatttctacaagaagtatcgattttcttcttcttcatttttcttt
tattttccagatattttacttgataatattccactcacaaatatcttttc
aacgagcacaaaatcgcaacttgattcgaattctatcaaaagttacagcc
atttttgtctcagatgcaaattattttgagatggatagaatttttatgaa
tttttacaaCTGACCACGCTAACACGTGATAACAATGTCAAGTTTTACCT
TAGGTTGATTAGATTTGCGAATTGTGGCCCTTTTCACGAAATTTACCCct
tgtgaaaaaattaaaatccgcAATTCGGTCAAATCACCTAGGAGAACGAA
AGAATTTAggtgaaaaagaggctgattGGCAAATTTTAATCCACTCGAAA
GTTTTAGATTCTCAATTGCCGAAAAAAGttcacgcgaaaattaatctaCC
TAAGGTAATAGCGACTGTATATACTACATGTTTCTTGATAAGGACCACTT
TGGTTTGAATAACATCAAAATCTTCCGATATGTTATGTGGGATTATCGCA
GCAAAAACAATCGTCTCATTGGATTAAAGCTTAAAAAGCAATGGGGTTGG
AATACCACCAGAGATTTTTATCCGAGAGAGGAgttaaattctattgttta
cagTTCAAAAGTCTAAATCATAGCTCCTTGTCGAGTAGGAATTAGAGTTC
AGTTTTATTTTCCGATAGAAAGACGGCTTTTGCATGTCTGTGACAATGTT
TAATTATCTCTCTGTGTGTTAAATGAAGAGTCCTAGATACAAGTCCTAAA
TAGAGCTTTCAGAAATTAGTTTGAATGCAACGACTACCTCgctttgaaac
cattaccaaggtgattaaatctCTTGAGTCTTCAAGTGTTACTTTTGTAA
ATAGAGAAAACGTCTTACGAACTTCTTTGGGATATCAATTatcatagcaa
tattttgaaaacgaggtaagccttgctcatgacgtaatttatgaaaaggt
ataTACCTGGTTCCTACATATTCAACTATAATTAGCCTAAAGAttaagat
aaataaataaaaaaattgaaacaatacaTAATATATCTGTTGATATGCAT
AACTGCTTAAGCCATTTGTCCAGTTTAATGTTTACAGTCACTAACGGTTG
GCATGTAATGTGAATTGTTTGCAAGATAATCTTCATTCATTCACCTATTC
ATATTCTTAATATAATCCATTCATTCGCCTATTCATTTACTCGTCCTGTC
TACTCTTTGTTGATTTCACTGATCTCCTCATAAACAGGATCATTATTGGA
ACTTTTCTCCACTGTTTGAATCTCACCATTCGCCTGGTCGTTTCGAATGT
TGTAAAAAAGTTCTTTATCTCTGATCCAACTATAGGCGTTGTTGAAGACG
AACACATAAACGCCCTCTTGAGCACCCTCTATGACGCCCTCCTCCATTAA
AATATGCGACTGTTTCCGCGATTTTTCGATCACTTCTATGACGTCACCAG
AGTCTTTTGGTTTTAGGGAAACTGAAAACTCGATATCGAAATCAGAGGTG
ACAAACTGGTAGTTAAGTTTGCTACCAGGTTGAGAGACTTCCACCTCTAT
CTCTATTTTGTTTCCCGCCTTGATAACAGTAGATTTGAATTCCGCTTGTT
TCACCTTCTCCGATGTGTAAAAAGACGTCGGAACCTCCCCACCGTATCCG
ATGTGTTGCTCACATTTCTCGCTTCCACTTTCGTCGACAGCAGTACCACC
ATAATACACCGGTATTTGATCGGGTTCGATATGCTTTTGTAAATACTCTT
TCCAGTTACTCCCAACCACTTTGATTTTCTGCTTCGTTTCTTCTTTCAAA
AACGGTTTCAGTAGCGAAAACAAGACCGGGAAAATACCGGGTGTCCGGAT
TACAACAATACGTTTCCGTAATGCGGGATAATCCTGGTCATACATTTGAA
CGGTTGCCTTAAACAAATCGAGTCCTGGTTTCCATAAATGTTTACGACCC
CCTCCATGAGCATCTAACACTAAAGTAGAATATTGTTCTATGGTTTTGTT
CAACTTTTTCTCTTGCTCAGCGCAAACAGATTTTGCATCTTCGCAATGTC
CTCGTTTATATTTCATCACTTCATCAGCTTTCACGCTGTGTAAAACGCCC
CAAAAATCCACTTGGCCGAGCGGCTCCCAAAACACCGGTCGTCCATCACG
ATCAAAACCGTAAAAACCACCAGGGTAGTATTTCTTAAGGAATGCTTGAG
GTTCCATCGCTCTCTCTTCGCTACTGTTCGTCGAATCAGTCATcccaaaa
aatacaaaaaatagtTATGTAATATGATGCAGCACACCACTGATAATAcg
attttgttgttttgattttgatttaatGATAGGAATAACAGAGTTTCTAG
AGTGAGCTATAACGACCTGTTATTATTATACTAAATTAAAATTCAGCATC
TCTCGAACTCTCTTCAAAGCTTTGACAGTCAGCAAGAAATTCTCCGTTCA
GTCAGTTCTCAATTTTCTTGCATCGCCCCATTACCAATTATTCAAAGAAT
GTCTCAAGAATAATAAGATGGAGGAGTTattaaaaaattatattgttcgt
GTCGTTATCTGTAATAACTGCcaatcttttgtttttatttcaaacaatAA
ATCAATTAATTAATACCGTATACCGGTCGGTATCTCAACTCGTCCGGTAA
TGCcgaaacttgaaaaaaaaacaacgagtGAATTTTCGGTTTACTTGAAG
TTCTCCAGAA Run BLAST on NCBI protein sequence of TCONS_00024487-protein >TCONS_00024487-protein ID=TCONS_00024487-protein|Name=TCONS_00024487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MTDSTNSSEERAMEPQAFLKKYYPGGFYGFDRDGRPVFWEPLGQVDFWGV
LHSVKADEVMKYKRGHCEDAKSVCAEQEKKLNKTIEQYSTLVLDAHGGGR
KHLWKPGLDLFKATVQMYDQDYPALRKRIVVIRTPGIFPVLFSLLKPFLK
EETKQKIKVVGSNWKEYLQKHIEPDQIPVYYGGTAVDESGSEKCEQHIGY
GGEVPTSFYTSEKVKQAEFKSTVIKAGNKIEIEVEVSQPGSKLNYQFVTS
DFDIEFSVSLKPKDSGDVIEVIEKSRKQSHILMEEGVIEGAQEGVYVFVF
NNAYSWIRDKELFYNIRNDQANGEIQTVEKSSNNDPVYEEISEINKE Run BLAST on NCBI transcript from alignment at sc0000499:128209..131318 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024487 ID=TCONS_00024487|Name=TCONS_00024487|organism=Clytia hemisphaerica|type=transcript|length=3110bp|location=Sequence derived from alignment at sc0000499:128209..131318 (Clytia hemisphaerica)
TTCTGGAGAACTTCAAGTAAACCGAAAATTCactcgttgtttttttttca
agtttcgGCATTACCGGACGAGTTGAGATACCGACCGGTATACGGTATTA
ATTAATTGATTTattgtttgaaataaaaacaaaagattgGCAGTTATTAC
AGATAACGACacgaacaatataattttttaatAACTCCTCCATCTTATTA
TTCTTGAGACATTCTTTGAATAATTGGTAATGGGGCGATGCAAGAAAATT
GAGAACTGACTGAACGGAGAATTTCTTGCTGACTGTCAAAGCTTTGAAGA
GAGTTCGAGAGATGCTGAATTTTAATTTAGTATAATAATAACAGGTCGTT
ATAGCTCACTCTAGAAACTCTGTTATTCCTATCattaaatcaaaatcaaa
acaacaaaatcgTATTATCAGTGGTGTGCTGCATCATATTACATAactat
tttttgtattttttgggATGACTGATTCGACGAACAGTAGCGAAGAGAGA
GCGATGGAACCTCAAGCATTCCTTAAGAAATACTACCCTGGTGGTTTTTA
CGGTTTTGATCGTGATGGACGACCGGTGTTTTGGGAGCCGCTCGGCCAAG
TGGATTTTTGGGGCGTTTTACACAGCGTGAAAGCTGATGAAGTGATGAAA
TATAAACGAGGACATTGCGAAGATGCAAAATCTGTTTGCGCTGAGCAAGA
GAAAAAGTTGAACAAAACCATAGAACAATATTCTACTTTAGTGTTAGATG
CTCATGGAGGGGGTCGTAAACATTTATGGAAACCAGGACTCGATTTGTTT
AAGGCAACCGTTCAAATGTATGACCAGGATTATCCCGCATTACGGAAACG
TATTGTTGTAATCCGGACACCCGGTATTTTCCCGGTCTTGTTTTCGCTAC
TGAAACCGTTTTTGAAAGAAGAAACGAAGCAGAAAATCAAAGTGGTTGGG
AGTAACTGGAAAGAGTATTTACAAAAGCATATCGAACCCGATCAAATACC
GGTGTATTATGGTGGTACTGCTGTCGACGAAAGTGGAAGCGAGAAATGTG
AGCAACACATCGGATACGGTGGGGAGGTTCCGACGTCTTTTTACACATCG
GAGAAGGTGAAACAAGCGGAATTCAAATCTACTGTTATCAAGGCGGGAAA
CAAAATAGAGATAGAGGTGGAAGTCTCTCAACCTGGTAGCAAACTTAACT
ACCAGTTTGTCACCTCTGATTTCGATATCGAGTTTTCAGTTTCCCTAAAA
CCAAAAGACTCTGGTGACGTCATAGAAGTGATCGAAAAATCGCGGAAACA
GTCGCATATTTTAATGGAGGAGGGCGTCATAGAGGGTGCTCAAGAGGGCG
TTTATGTGTTCGTCTTCAACAACGCCTATAGTTGGATCAGAGATAAAGAA
CTTTTTTACAACATTCGAAACGACCAGGCGAATGGTGAGATTCAAACAGT
GGAGAAAAGTTCCAATAATGATCCTGTTTATGAGGAGATCAGTGAAATCA
ACAAAGAGTAGACAGGACGAGTAAATGAATAGGCGAATGAATGGATTATA
TTAAGAATATGAATAGGTGAATGAATGAAGATTATCTTGCAAACAATTCA
CATTACATGCCAACCGTTAGTGACTGTAAACATTAAACTGGACAAATGGC
TTAAGCAGTTATGCATATCAACAGATATATTAtgtattgtttcaattttt
ttatttatttatcttaaTCTTTAGGCTAATTATAGTTGAATATGTAGGAA
CCAGGTAtataccttttcataaattacgtcatgagcaaggcttacctcgt
tttcaaaatattgctatgatAATTGATATCCCAAAGAAGTTCGTAAGACG
TTTTCTCTATTTACAAAAGTAACACTTGAAGACTCAAGagatttaatcac
cttggtaatggtttcaaagcGAGGTAGTCGTTGCATTCAAACTAATTTCT
GAAAGCTCTATTTAGGACTTGTATCTAGGACTCTTCATTTAACACACAGA
GAGATAATTAAACATTGTCACAGACATGCAAAAGCCGTCTTTCTATCGGA
AAATAAAACTGAACTCTAATTCCTACTCGACAAGGAGCTATGATTTAGAC
TTTTGAActgtaaacaatagaatttaacTCCTCTCTCGGATAAAAATCTC
TGGTGGTATTCCAACCCCATTGCTTTTTAAGCTTTAATCCAATGAGACGA
TTGTTTTTGCTGCGATAATCCCACATAACATATCGGAAGATTTTGATGTT
ATTCAAACCAAAGTGGTCCTTATCAAGAAACATGTAGTATATACAGTCGC
TATTACCTTAGGtagattaattttcgcgtgaaCTTTTTTCGGCAATTGAG
AATCTAAAACTTTCGAGTGGATTAAAATTTGCCaatcagcctctttttca
ccTAAATTCTTTCGTTCTCCTAGGTGATTTGACCGAATTgcggattttaa
ttttttcacaagGGGTAAATTTCGTGAAAAGGGCCACAATTCGCAAATCT
AATCAACCTAAGGTAAAACTTGACATTGTTATCACGTGTTAGCGTGGTCA
Gttgtaaaaattcataaaaattctatccatctcaaaataatttgcatctg
agacaaaaatggctgtaacttttgatagaattcgaatcaagttgcgattt
tgtgctcgttgaaaagatatttgtgagtggaatattatcaagtaaaatat
ctggaaaataaaagaaaaatgaagaagaagaaaatcgatacttcttgtag
aaatgtggtataattaccattttcacatgagtgattcttcaatcttagat
catcaaaatattcattcaatcaaaagatatcaaacaaagtttattgctgg
ttgactctataaagtagtaaaaaacgacaaaaacagccttttgtcgatca
accaataacaaactttgtttgatatatttttatagaatggatatttttga
aaagttttttcagagtgATGATCATCTAAGATTAAAGAATCACTCcagtg
aaaatggtaattataccacatttctacaagaagtatcgatttttttcttc
ttcatttttcatcttcaatttctttctttttcaattttttttgcttgaca
aTACTCCACT Coding sequence (CDS) from alignment at sc0000499:128209..131318 >TCONS_00024487 ID=TCONS_00024487|Name=TCONS_00024487|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000499:128209..131318 (Clytia hemisphaerica)
ATGACTGATTCGACGAACAGTAGCGAAGAGAGAGCGATGGAACCTCAAGC
ATTCCTTAAGAAATACTACCCTGGTGGTTTTTACGGTTTTGATCGTGATG
GACGACCGGTGTTTTGGGAGCCGCTCGGCCAAGTGGATTTTTGGGGCGTT
TTACACAGCGTGAAAGCTGATGAAGTGATGAAATATAAACGAGGACATTG
CGAAGATGCAAAATCTGTTTGCGCTGAGCAAGAGAAAAAGTTGAACAAAA
CCATAGAACAATATTCTACTTTAGTGTTAGATGCTCATGGAGGGGGTCGT
AAACATTTATGGAAACCAGGACTCGATTTGTTTAAGGCAACCGTTCAAAT
GTATGACCAGGATTATCCCGCATTACGGAAACGTATTGTTGTAATCCGGA
CACCCGGTATTTTCCCGGTCTTGTTTTCGCTACTGAAACCGTTTTTGAAA
GAAGAAACGAAGCAGAAAATCAAAGTGGTTGGGAGTAACTGGAAAGAGTA
TTTACAAAAGCATATCGAACCCGATCAAATACCGGTGTATTATGGTGGTA
CTGCTGTCGACGAAAGTGGAAGCGAGAAATGTGAGCAACACATCGGATAC
GGTGGGGAGGTTCCGACGTCTTTTTACACATCGGAGAAGGTGAAACAAGC
GGAATTCAAATCTACTGTTATCAAGGCGGGAAACAAAATAGAGATAGAGG
TGGAAGTCTCTCAACCTGGTAGCAAACTTAACTACCAGTTTGTCACCTCT
GATTTCGATATCGAGTTTTCAGTTTCCCTAAAACCAAAAGACTCTGGTGA
CGTCATAGAAGTGATCGAAAAATCGCGGAAACAGTCGCATATTTTAATGG
AGGAGGGCGTCATAGAGGGTGCTCAAGAGGGCGTTTATGTGTTCGTCTTC
AACAACGCCTATAGTTGGATCAGAGATAAAGAACTTTTTTACAACATTCG
AAACGACCAGGCGAATGGTGAGATTCAAACAGTGGAGAAAAGTTCCAATA
ATGATCCTGTTTATGAGGAGATCAGTGAAATCAACAAAGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024487-exon-sc0000499-1491911889:128209..131318 | TCONS_00024487-exon-sc0000499-1491911889:128209..131318 | Clytia hemisphaerica | exon |
| TCONS_00024487-exon-sc0000499-1510915933:128209..131318 | TCONS_00024487-exon-sc0000499-1510915933:128209..131318 | Clytia hemisphaerica | exon |
| TCONS_00024487-exon-sc0000499-1575043694:128209..131318 | TCONS_00024487-exon-sc0000499-1575043694:128209..131318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000499 | supercontig | sc0000499:128209..131318 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006810 | transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00024487 vs. Swiss-Prot (Human)
Match: S14L2 (SEC14-like protein 2 OS=Homo sapiens GN=SEC14L2 PE=1 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 3.888e-72 Identity = 117/308 (37.99%), Postives = 189/308 (61.36%), Query Frame = -3
Query: 1696 EPQAFLKKYYPGGFYGFDRDGRPVFWEPLGQVDFWGVLHSVKADEVMKYKRGHCEDAKSVCAEQEKKLNKTIEQYSTLVLDAHGGGRKHLWKPGLDLFKATVQMYDQDYPALRKRIVVIRTPGIFPVLFSLLKPFLKEETKQKIKVVGSNWKEYLQKHIEPDQIPVYYGGTAVDESGSEKCEQHIGYGGEVPTSFYTSEKVKQAEFKSTVIKAGNKIEIEVEVSQPGSKLNYQFVTSDFDIEFSVSLKPK-----DSGDVIEVIEKSRKQSHILMEEGVIEGAQEGVYVFVFNNAYSWIRDKELFYNI 2604
+P +++Y GG G+D DG PV+++ +G +D G+L S ++++ K CE CA Q KL + +E T++ D G G KHLWKP ++ + + M++++YP KR+ V++ P +FPV ++L+KPFL E+T++KI V+G+NWKE L KHI PDQ+PV YGGT D G+ KC+ I YGG++P +Y ++VKQ S I G+ ++E E+ PG L +QF++ D+ F + LK K +G++ EV+ R SH++ E+G + + G+YV F+N YS+I K++ + +
Sbjct: 75 QPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETI-TIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTV 381
The following BLAST results are available for this feature:
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