TCONS_00024501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024501
Unique NameTCONS_00024501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length986

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024501 ID=TCONS_00024501|Name=TCONS_00024501|organism=Clytia hemisphaerica|type=transcript|length=986bp
GTAAGaggtttatttaatttttaccactttcacaaaaattcaaaaaatta
caaagaaaaaaattacagaaattacttATTGACACTAGTATCGTGATCCA
AAAAtccgaaaatctaacaaaaattacaaaaattacacACGACAATAATC
AAACTTTACAATCTTTTAGTTATGTTtctttgaaagtttcaaaaggTTCA
AATGTTTCTCAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTA
ACATCTCCGAAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGG
CTCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGG
ATTCCCTTCACGGCAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTC
CCAGTGGAATACAGCTTCCTCTTCTTGTAAATTGACCACGGTAGTAATCA
CTTAAGGGATCTCTTTTTGCTTCACGACAAACATATTTTGGGTTCGAGAA
ACTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTT
CACGGCAACATCTCCCATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGA
ATACAGCTTCGTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGG
ATCTCTTTTTGCTTCACGACAAACATATTTCGGGTTCGAGAAACTTCCTT
CGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTCACGGCAA
CATCTCCCATTGTTTCCCTCACAGCCAGCGTTACCCAGTGGAACACAGCT
TCCTTGTACTTTTTCAAAAGCCAAAAGTGCGAAAAGTATCGTCAGTAACA
TTGTCTTCATCTTCATATAATTTAAAACCTATAAAGaataattgacattt
ttcataaTAATCCTTAAACTGTGTTACAAACAGTACATTTGATTAAACAA
CGGTGATATATTGCTATAACAAGAAGGTGAGAGACT
Run BLAST on NCBI

transcript from alignment at sc0000501:71024..72585+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024501 ID=TCONS_00024501|Name=TCONS_00024501|organism=Clytia hemisphaerica|type=transcript|length=1562bp|location=Sequence derived from alignment at sc0000501:71024..72585+ (Clytia hemisphaerica)
GTAAGaggtttatttaatttttaccactttcacaaaaattcaaaaaatta
caaagaaaaaaattacagaaattacttATTGACACTAGTATCGTGATCCA
AAAAtccgaaaatctaacaaaaattacaaaaattacacACGACAATAATC
AAACTTTACAATCTTTTAGTTATGTTtctttgaaagtttcaaaaggTTCA
AATGTTTCTCAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTA
ACATCTCCGAAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGG
CTCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGG
ATTCCCTTCACGGCAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTC
CCAGTGGAATACAGCTTCCTCTTCTTGTAAATTGACCACGGTAGTAATCA
CTTAAGGGATCTCTTTTTGCTTCACGACAAACATATTTTGGGTTCGAGAA
ACTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTT
CACGGCAACATCTCCCATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGA
ATACAGCTTCGTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGG
ATCTCTTTTTGCTTCACGACAAACATATTTCGGGTTCGAGAAACTTCCTT
CGTTGACACATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAA
CATCTCCCGTTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCT
TCCTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTT
TTGCTTCACGACACACATATTTTGGGCTCGAGAAACTTCCTTCGTTGACA
CATCTTCTCATTGAGCCGGTATAGGGATTCCCTTCACGGCAACATCTTCC
ATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTCCTCTTC
TTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCA
CGACACACATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCT
CATTGAGCCAGTATAGGGATTCCCTTCACGACAACATTTCCCATTGTTTC
CCTCACAGCCAGCGTTTCCCAGTGGAATACAGCTCCCTCTTCTTGCAGAT
TGGCCAAGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACAC
ATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATTTTCTCATTGAGC
CAGTATATGGATTTCCTTCACGACAACATCTCCCATTGTTTCCCTCACAG
CCAGCGTTACCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCCAA
AAGTGCGAAAAGTATCGTCAGTAACATTGTCTTCATCTTCATATAATTTA
AAACCTATAAAGaataattgacatttttcataaTAATCCTTAAACTGTGT
TACAAACAGTACATTTGATTAAACAACGGTGATATATTGCTATAACAAGA
AGGTGAGAGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013763XLOC_013763Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024501-exon-sc0000501-1491911889:71024..71732TCONS_00024501-exon-sc0000501-1491911889:71024..71732Clytia hemisphaericaexon
TCONS_00024501-exon-sc0000501-1510915933:71024..71732TCONS_00024501-exon-sc0000501-1510915933:71024..71732Clytia hemisphaericaexon
TCONS_00024501-exon-sc0000501-1575043694:71024..71732TCONS_00024501-exon-sc0000501-1575043694:71024..71732Clytia hemisphaericaexon
TCONS_00024501-exon-sc0000501-1491911889:71925..71966TCONS_00024501-exon-sc0000501-1491911889:71925..71966Clytia hemisphaericaexon
TCONS_00024501-exon-sc0000501-1510915933:71925..71966TCONS_00024501-exon-sc0000501-1510915933:71925..71966Clytia hemisphaericaexon
TCONS_00024501-exon-sc0000501-1575043694:71925..71966TCONS_00024501-exon-sc0000501-1575043694:71925..71966Clytia hemisphaericaexon
TCONS_00024501-exon-sc0000501-1491911889:72351..72585TCONS_00024501-exon-sc0000501-1491911889:72351..72585Clytia hemisphaericaexon
TCONS_00024501-exon-sc0000501-1510915933:72351..72585TCONS_00024501-exon-sc0000501-1510915933:72351..72585Clytia hemisphaericaexon
TCONS_00024501-exon-sc0000501-1575043694:72351..72585TCONS_00024501-exon-sc0000501-1575043694:72351..72585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000501supercontigsc0000501:71024..72585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.12853e-07	6.28075e-07	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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