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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024512 ID=TCONS_00024512|Name=TCONS_00024512|organism=Clytia hemisphaerica|type=transcript|length=998bpRun BLAST on NCBI protein sequence of TCONS_00024512-protein >TCONS_00024512-protein ID=TCONS_00024512-protein|Name=TCONS_00024512-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp MAVNLEEYFRTTFEDKLLVNMPEREDDHLTPATRLLEKRREMAEVEQALTRun BLAST on NCBI transcript from alignment at sc0000501:13212..38220- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024512 ID=TCONS_00024512|Name=TCONS_00024512|organism=Clytia hemisphaerica|type=transcript|length=25009bp|location=Sequence derived from alignment at sc0000501:13212..38220- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000501:13212..38220- >TCONS_00024512 ID=TCONS_00024512|Name=TCONS_00024512|organism=Clytia hemisphaerica|type=CDS|length=11895bp|location=Sequence derived from alignment at sc0000501:13212..38220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024512 vs. Swiss-Prot (Human)
Match: CCD42 (Coiled-coil domain-containing protein 42 OS=Homo sapiens GN=CCDC42 PE=1 SV=2) HSP 1 Score: 205.297 bits (521), Expect = 1.015e-62 Identity = 132/302 (43.71%), Postives = 195/302 (64.57%), Query Frame = 3
Query: 72 NLEEYFRTTFEDKLLV---NMPEREDDHLTPATRLLEKRREMAEVEQALTAQKEEFQMKMXXXXXXXXXXXXXXXXXXXSLLRFDKFLKENDSKRARALKKAADERDASSFKDKEIEKLIEETDILVQKKNKMQKKLERYSKFQKYLDKVLEVAEEFHEIREITARYDTLIATHNDLLGNENRNQDAIEQEKARLNRFIEDKNNEVLNYNNQLAQLQTELEKTQSKAVKWESTWTHIQNTAAKKTLLLGRIKMATHNLFMLVNKHTRQTQPI--ESTTEQLNKIQTFIQDLTQITNEIKRSE 962
+L EYFR + ++LL +P E +P+ LLEK++E + Q + +K+ FQ +ME+L R EEL KE QLK + + ++F++END KR RA+KKA ER+ +E+ K +E L + ++ KL+ Y F KYL+KV+E +E F EI E+ ARY TL++ +DL+ + Q+ IE+ KARL R++E+K++E+L NN+LA+LQ ++ +S + WES W HIQNTAAKKTLLLG IKMAT NLF +V+KH ++ + E T +QL+ IQ FIQD + I E+K+ E
Sbjct: 10 DLAEYFRLQYGERLLQMLQKLPNVEGASESPSIWLLEKKKETEIMHQTMVQKKKMFQRRMETLNLRWEELGVKEAQLKAHIQKSEQFIQENDQKRIRAMKKANKERELKCQHMQELTKRKQEMVALRLEHQRLSAKLKDYYIFNKYLEKVVENSE-FEEIHEVIARYKTLVSMRHDLMQSAQEGQEKIERAKARLARYMEEKDDEILQQNNELARLQMRFDRARSNVIFWESRWAHIQNTAAKKTLLLGTIKMATLNLFQIVSKHLKEVTEVALEDTHKQLDMIQQFIQDRSDIWAEVKKKE 310 The following BLAST results are available for this feature:
BLAST of TCONS_00024512 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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